Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

26836698 .. 26842554

Gene Structure 5857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g31881.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAGAGCTCTGCTAGGGTATTTCCTTGGTGGCGCCCTCGTGATTTTGGTCGGAGATTTTGGGTCTTCGAATGTTTCCGGCCATTCTGTTGAGATCGGTGGCGGTGGAGAGATCTCATGGCTCGAAATCATACAATCGGAGTCCGATCTCCGTTTTCAGGTTTGTGTCGTCGTCTCTCTGACGATGAAAGCCTGTTTGGTCTTTGGGCGGAGCGTTAGAGCTCCGGCTTGCAACGGACGGCGATGTCGATCGCTGGTTCGCGGCACAAATCCAATCGATGCAGAGGTGGCTCTCTTCCCGATCGGTGCTCTTGCGATAGAGGCCTTCAAACGTTCATTGTGGGTCGACAACATCAACGGGAAACACCACACCAGATCCGGCAGCACCACACCAGATCCGGCAACACCACACCAAATTTGGCAACACCGATTCTCTTTAGATCCCAAAGCCACCAGCAGCGAACCCGACTCTACCCCGATCTGGCTGTGCTCAGGCTACCTACACAGCCCTTCTCTGAGTTCTCTCCGTGATCTGGCGCGTCTCCACCTTCGTCCACCTTCGATCCAGCAGTGGCGCTCCAACTCTGCGCCTCTGATCCAGCATCGTCGACCCCCTGCTAACCCTCCACCGGCTACAGCCTTAATTCCGATCCACTTTGATCTGCTCCTATTCGGCCCAATCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

24.88

Weight (kDa)

9.44

Isoelectric Point (pI)

59.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	243
AccB1I	GGYRCC	1 cut(s)	32
AccI	GTMKAC	2 cut(s)	345, 607
AccII	CGCG	2 cut(s)	261, 538
AciI	CCGC	3 cut(s)	102, 208, 261
AclI	AACGTT	1 cut(s)	331
AclWI	GGATC	6 cut(s)	369, 389, 434, 556, 589, 643
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	414
AcyI	GRCGYC	1 cut(s)	33
AfiI	CCNNNNNNNGG	4 cut(s)	157, 480, 532, 628
AgsI	TTSAA	1 cut(s)	328
AjuI	GAANNNNNNNTTGG	2 cut(s)	179, 211
AluBI	AGCT	2 cut(s)	8, 221
AluI	AGCT	2 cut(s)	8, 221
Alw21I	GWGCWC	4 cut(s)	10, 223, 310, 491
Alw26I	GTCTC	2 cut(s)	178, 545
AlwI	GGATC	6 cut(s)	369, 389, 434, 556, 589, 643
AoxI	GGCC	3 cut(s)	79, 321, 673
ApeKI	GCWGC	2 cut(s)	381, 456
ApoI	RAATTY	1 cut(s)	414
AspLEI	GCGC	4 cut(s)	35, 538, 576, 589
AspS9I	GGNCC	1 cut(s)	674
AsuII	TTCGAA	1 cut(s)	68
BanI	GGYRCC	1 cut(s)	32
BanII	GRGCYC	2 cut(s)	10, 223
BauI	CACGAG	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	4 cut(s)	10, 223, 310, 491
BbvI	GCAGC	2 cut(s)	393, 468
BceAI	ACGGC	1 cut(s)	254
BcoDI	GTCTC	2 cut(s)	178, 545
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	633
BfoI	RGCGCY	2 cut(s)	36, 577
BglII	AGATCT	1 cut(s)	111
BisI	GCNGC	3 cut(s)	262, 382, 457
BlsI	GCNGC	3 cut(s)	263, 383, 458
BmgT120I	GGNCC	1 cut(s)	674
BmiI	GGNNCC	1 cut(s)	34
BmsI	GCATC	2 cut(s)	268, 610
BpiI	GAAGAC	1 cut(s)	57
Bpu10I	CCTNAGC	1 cut(s)	490
Bpu14I	TTCGAA	1 cut(s)	68
Bsa29I	ATCGAT	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	247
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	25
BsaWI	WCCGGW	1 cut(s)	681
Bsc4I	CCNNNNNNNGG	4 cut(s)	157, 480, 532, 628
Bse118I	RCCGGY	1 cut(s)	628
Bse8I	GATNNNNATC	1 cut(s)	247
BseCI	ATCGAT	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	25
BseJI	GATNNNNATC	1 cut(s)	247
BseLI	CCNNNNNNNGG	4 cut(s)	157, 480, 532, 628
BseMII	CTCAG	2 cut(s)	504, 506
BseXI	GCAGC	2 cut(s)	393, 468
Bsh1236I	CGCG	2 cut(s)	261, 538
Bsh1285I	CGRYCG	2 cut(s)	251, 303
BshFI	GGCC	3 cut(s)	81, 323, 675
BshNI	GGYRCC	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	276
BsiEI	CGRYCG	2 cut(s)	251, 303
BsiHKAI	GWGCWC	4 cut(s)	10, 223, 310, 491
BsiSI	CCGG	6 cut(s)	78, 224, 378, 398, 629, 682
BslI	CCNNNNNNNGG	4 cut(s)	157, 480, 532, 628
BsmAI	GTCTC	2 cut(s)	178, 545
BsmBI	CGTCTC	2 cut(s)	178, 545
BsnI	GGCC	3 cut(s)	81, 323, 675
Bsp119I	TTCGAA	1 cut(s)	68
Bsp1286I	GDGCHC	4 cut(s)	10, 223, 310, 491
BspACI	CCGC	3 cut(s)	102, 208, 261
BspANI	GGCC	3 cut(s)	81, 323, 675
BspCNI	CTCAG	2 cut(s)	503, 507
BspDI	ATCGAT	1 cut(s)	276
BspFNI	CGCG	2 cut(s)	261, 538
BspLI	GGNNCC	1 cut(s)	34
BspPI	GGATC	6 cut(s)	369, 389, 434, 556, 589, 643
BspT104I	TTCGAA	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	628
BssAI	RCCGGY	1 cut(s)	628
BssECI	CCNNGG	1 cut(s)	25
BssNI	GRCGYC	1 cut(s)	33
BssSI	CACGAG	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	25
Bst2BI	CACGAG	1 cut(s)	38
Bst6I	CTCTTC	1 cut(s)	299
BstACI	GRCGYC	1 cut(s)	33
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	490, 515
BstFNI	CGCG	2 cut(s)	261, 538
BstH2I	RGCGCY	2 cut(s)	36, 577
BstHHI	GCGC	4 cut(s)	35, 538, 576, 589
BstMAI	GTCTC	2 cut(s)	178, 545
BstMCI	CGRYCG	2 cut(s)	251, 303
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 320
BstSFI	CTRYAG	1 cut(s)	633
BstUI	CGCG	2 cut(s)	261, 538
BstV1I	GCAGC	2 cut(s)	393, 468
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	4 cut(s)	111, 374, 394, 439
BstYI	RGATCY	4 cut(s)	111, 374, 394, 439
Bsu15I	ATCGAT	1 cut(s)	276
BsuRI	GGCC	3 cut(s)	81, 323, 675
BsuTUI	ATCGAT	1 cut(s)	276
BtgZI	GCGATG	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	575
BtsIMutI	CAGTG	1 cut(s)	575
Cac8I	GCNNGC	1 cut(s)	229
CfoI	GCGC	4 cut(s)	35, 538, 576, 589
Cfr10I	RCCGGY	1 cut(s)	628
Cfr13I	GGNCC	1 cut(s)	674
ClaI	ATCGAT	1 cut(s)	276
CseI	GACGC	1 cut(s)	527
CviAII	CATG	1 cut(s)	117
DdeI	CTNAG	2 cut(s)	490, 515
DinI	GGCGCC	1 cut(s)	34
DrdI	GACNNNNNNGTC	1 cut(s)	243
DseDI	GACNNNNNNGTC	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	299
EarI	CTCTTC	1 cut(s)	299
EciI	GGCGGA	1 cut(s)	223
Ecl136II	GAGCTC	2 cut(s)	8, 221
Eco130I	CCWWGG	1 cut(s)	25
Eco147I	AGGCCT	1 cut(s)	323
Eco24I	GRGCYC	2 cut(s)	10, 223
Eco53kI	GAGCTC	2 cut(s)	8, 221
EcoICRI	GAGCTC	2 cut(s)	8, 221
EcoT14I	CCWWGG	1 cut(s)	25
EcoT38I	GRGCYC	2 cut(s)	10, 223
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	25
Esp3I	CGTCTC	2 cut(s)	178, 545
FaeI	CATG	1 cut(s)	120
FaiI	YATR	2 cut(s)	118, 131
FatI	CATG	1 cut(s)	116
FblI	GTMKAC	2 cut(s)	345, 607
Fnu4HI	GCNGC	3 cut(s)	262, 382, 457
FriOI	GRGCYC	2 cut(s)	10, 223
Fsp4HI	GCNGC	3 cut(s)	262, 382, 457
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	4 cut(s)	34, 537, 575, 588
GluI	GCNGC	3 cut(s)	262, 382, 457
HaeII	RGCGCY	2 cut(s)	36, 577
HaeIII	GGCC	3 cut(s)	81, 323, 675
HapII	CCGG	6 cut(s)	78, 224, 378, 398, 629, 682
HgaI	GACGC	1 cut(s)	527
HhaI	GCGC	4 cut(s)	35, 538, 576, 589
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	120
Hin6I	GCGC	4 cut(s)	33, 536, 574, 587
HinP1I	GCGC	4 cut(s)	33, 536, 574, 587
HincII	GTYRAC	2 cut(s)	346, 608
HindII	GTYRAC	2 cut(s)	346, 608
HinfI	GANTC	3 cut(s)	140, 429, 467
HpaII	CCGG	6 cut(s)	78, 224, 378, 398, 629, 682
Hpy166II	GTNNAC	3 cut(s)	346, 554, 608
Hpy188I	TCNGA	7 cut(s)	53, 139, 145, 180, 516, 594, 648
Hpy188III	TCNNGA	2 cut(s)	40, 298
Hpy8I	GTNNAC	3 cut(s)	346, 554, 608
Hpy99I	CGWCG	2 cut(s)	173, 609
HpyAV	CCTTC	4 cut(s)	334, 519, 557, 567
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	2 cut(s)	231, 281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 320
HpyF3I	CTNAG	2 cut(s)	490, 515
HpySE526I	ACGT	1 cut(s)	331
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	120
HspAI	GCGC	4 cut(s)	33, 536, 574, 587
KasI	GGCGCC	1 cut(s)	32
LmnI	GCTCC	4 cut(s)	210, 226, 581, 669
Lsp1109I	GCAGC	2 cut(s)	393, 468
LweI	GCATC	2 cut(s)	268, 610
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	1 cut(s)	331
MboII	GAAGA	2 cut(s)	57, 286
MflI	RGATCY	4 cut(s)	111, 374, 394, 439
MhlI	GDGCHC	4 cut(s)	10, 223, 310, 491
MluCI	AATT	2 cut(s)	414, 642
Mly113I	GGCGCC	1 cut(s)	33
MlyI	GAGTC	2 cut(s)	149, 461
MmeI	TCCRAC	2 cut(s)	31, 603
MnlI	CCTC	5 cut(s)	47, 277, 313, 600, 633
MseI	TTAA	1 cut(s)	641
MspI	CCGG	6 cut(s)	78, 224, 378, 398, 629, 682
MvnI	CGCG	2 cut(s)	261, 538
MwoI	GCNNNNNNNGC	2 cut(s)	287, 320
NarI	GGCGCC	1 cut(s)	33
NlaIII	CATG	1 cut(s)	120
NlaIV	GGNNCC	1 cut(s)	34
NspV	TTCGAA	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	323
PcsI	WCGNNNNNNNCGW	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	429
PkrI	GCNGC	3 cut(s)	263, 383, 458
Ple19I	CGATCG	2 cut(s)	251, 303
PleI	GAGTC	2 cut(s)	148, 461
PluTI	GGCGCC	1 cut(s)	36
PpsI	GAGTC	2 cut(s)	148, 461
Psp124BI	GAGCTC	2 cut(s)	10, 223
Psp1406I	AACGTT	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	674
PsuI	RGATCY	4 cut(s)	111, 374, 394, 439
PvuI	CGATCG	2 cut(s)	251, 303
SacI	GAGCTC	2 cut(s)	10, 223
SalI	GTCGAC	2 cut(s)	344, 606
SaqAI	TTAA	1 cut(s)	641
SatI	GCNGC	3 cut(s)	262, 382, 457
Sau96I	GGNCC	1 cut(s)	674
SchI	GAGTC	2 cut(s)	149, 461
SduI	GDGCHC	4 cut(s)	10, 223, 310, 491
SetI	ASST	8 cut(s)	10, 162, 223, 288, 334, 501, 549, 559
SfaNI	GCATC	2 cut(s)	268, 610
SfcI	CTRYAG	1 cut(s)	633
SfoI	GGCGCC	1 cut(s)	34
SfuI	TTCGAA	1 cut(s)	68
Sse9I	AATT	2 cut(s)	414, 642
SseBI	AGGCCT	1 cut(s)	323
SsiI	CCGC	3 cut(s)	102, 208, 261
SspDI	GGCGCC	1 cut(s)	32
SspMI	CTAG	1 cut(s)	14
SstI	GAGCTC	2 cut(s)	10, 223
StuI	AGGCCT	1 cut(s)	323
StyI	CCWWGG	1 cut(s)	25
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	7 cut(s)	68, 123, 247, 276, 345, 560, 607
TasI	AATT	2 cut(s)	414, 642
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	1 cut(s)	429
Tru1I	TTAA	1 cut(s)	641
Tru9I	TTAA	1 cut(s)	641
TscAI	CASTG	1 cut(s)	575
TseI	GCWGC	2 cut(s)	381, 456
TspDTI	ATGAA	2 cut(s)	200, 324
TspGWI	ACGGA	3 cut(s)	140, 249, 515
TspRI	CASTG	1 cut(s)	575
XapI	RAATTY	1 cut(s)	414
XcmI	CCANNNNNNNNNTGG	1 cut(s)	414
XmiI	GTMKAC	2 cut(s)	345, 607
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.