Rmu_sc0005399.1_g000009

MULE transposase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005399.1
OG0000607
Physical Location & Seq
Forward (+)
50646 .. 55505
4860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005399.1_g000009.1.cds

Sequence Viewer

Length: 1245 bp
atgacgtttaagacagtagaggaggcggagaggttctattctacatattccttggcacttggctttggatttaggaaggataccaaaagagaggctgaaggtatgatccggaggagacaatggctttgcaacaagcaagggactcgagctaaaaagtggaaggagatcaggaaggagaaccaagccacactacgacagggaccagagtactttgaagatgggcaccgtgtttacacaatgtcagcttacaagcggcctgattttgagcacaaggtagtttactaccatgggaaaaacactgaaagtgcaacagacctgatcatggtatattcttgtaacatgtttcagtataggggagtcccatgtcgtcacatgttcacagtgatgaaacacgaacacatcaatgagattccaaagtcactgattgtgaagagatggtcgaagtctgctagagatgtgtgttcaatcaaatatccggaacaagatatttccaaagaagccctggaagttagtaggtatggtgctatgagtgttgattgcaaccgaatgtgtttttatgcttccaagtcggaagcagggtacaacatgttgaagagagagataaatagactgacaacaataatggaagggttgttgagaggctgtgaacaggttcaaagtatagctacaccgaagagtaaaggttgtgttttaagagatcctatcaccgctaagaccaaaggcagagaagccaaaagcgacaaaaagaaggagaaagaagctgagaagagaggcggcaaagaagatgaaaagacaggcggcgaaggaagcaacactccttggaatgcaacacctgcgaaaagatccattcattgtagtagatgcaaaggtattattggtcctttcactgtggtgtgcaagatgtcttcattggaagaaacaacccccattgtgaactgggatcagaagaagcctagtctcgatatagcaggtagccttatggtccctgcattggatgaaaagcataagcatatctatgatgaatatgagaaggaagacgactcaaagccaatacatgcgcacacatgttctgctgttgaagaaggattttgcatccatatcaccgatgtcactaaaagaccatacgacacatgtgcacacctgtacaacgtcagtccagacaacaaaaagagatgcagttgtatcttatgccactgggaagaggaacaagaagagaatgccaattcacctccctcgggttattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

414

Amino Acids

47.61

Weight (kDa)

8.79

Isoelectric Point (pI)

53.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 841
Acc16I TGCGCA 1 cut(s) 1059
Acc36I ACCTGC 2 cut(s) 841, 959
AccB1I GGYRCC 1 cut(s) 222
AccIII TCCGGA 2 cut(s) 108, 475
AciI CCGC 5 cut(s) 26, 253, 708, 774, 798
AclWI GGATC 4 cut(s) 100, 692, 837, 948
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 3 cut(s) 209, 581, 1145
AfiI CCNNNNNNNGG 3 cut(s) 322, 991, 1235
AflIII ACRYGT 5 cut(s) 339, 372, 585, 1064, 1130
AgsI TTSAA 5 cut(s) 215, 465, 592, 656, 1079
AjnI CCWGG 1 cut(s) 501
AleI CACNNNNGTG 1 cut(s) 890
AluBI AGCT 4 cut(s) 149, 245, 665, 761
AluI AGCT 4 cut(s) 149, 245, 665, 761
Alw21I GWGCWC 2 cut(s) 270, 1138
Alw26I GTCTC 2 cut(s) 109, 962
Alw44I GTGCAC 1 cut(s) 1134
AlwI GGATC 4 cut(s) 100, 692, 837, 948
Ama87I CYCGRG 2 cut(s) 144, 1234
Aor13HI TCCGGA 2 cut(s) 108, 475
AoxI GGCC 1 cut(s) 254
ApaLI GTGCAC 1 cut(s) 1134
ArsI GACNNNNNNTTYG 2 cut(s) 108, 140
Asp700I GAANNNNTTC 1 cut(s) 651
AspLEI GCGC 1 cut(s) 1060
AspS9I GGNCC 3 cut(s) 200, 878, 982
AsuHPI GGTGA 3 cut(s) 697, 1093, 1218
AvaI CYCGRG 2 cut(s) 144, 1234
AvaII GGWCC 3 cut(s) 200, 878, 982
BaeGI GKGCMC 2 cut(s) 225, 1138
BanI GGYRCC 1 cut(s) 222
BbsI GAAGAC 2 cut(s) 897, 1041
Bbv12I GWGCWC 2 cut(s) 270, 1138
BccI CCATC 2 cut(s) 212, 429
BcgI CGANNNNNNTGC 4 cut(s) 125, 159, 1115, 1149
BciT130I CCWGG 1 cut(s) 503
BciVI GTATCC 1 cut(s) 73
BclI TGATCA 1 cut(s) 318
BcoDI GTCTC 2 cut(s) 109, 962
BfaI CTAG 2 cut(s) 450, 954
BfuAI ACCTGC 2 cut(s) 841, 959
BfuI GTATCC 1 cut(s) 73
BisI GCNGC 3 cut(s) 254, 775, 799
BlsI GCNGC 3 cut(s) 255, 776, 800
BmcAI AGTACT 1 cut(s) 209
Bme1390I CCNGG 1 cut(s) 503
Bme18I GGWCC 3 cut(s) 200, 878, 982
BmeT110I CYCGRG 2 cut(s) 144, 1234
BmgT120I GGNCC 3 cut(s) 200, 878, 982
BmiI GGNNCC 3 cut(s) 201, 224, 984
BmrFI CCNGG 1 cut(s) 503
BmrI ACTGGG 2 cut(s) 946, 1204
BmsI GCATC 3 cut(s) 851, 1101, 1163
BmuI ACTGGG 2 cut(s) 946, 1204
BpiI GAAGAC 2 cut(s) 897, 1041
BsaJI CCNNGG 5 cut(s) 51, 286, 501, 818, 1233
BsaWI WCCGGW 2 cut(s) 108, 475
Bsc4I CCNNNNNNNGG 3 cut(s) 322, 991, 1235
Bse1I ACTGG 2 cut(s) 941, 1199
BseAI TCCGGA 2 cut(s) 108, 475
BseBI CCWGG 1 cut(s) 503
BseDI CCNNGG 5 cut(s) 51, 286, 501, 818, 1233
BseGI GGATG 2 cut(s) 1000, 1092
BseLI CCNNNNNNNGG 3 cut(s) 322, 991, 1235
BseMII CTCAG 1 cut(s) 753
BseNI ACTGG 2 cut(s) 941, 1199
BseRI GAGGAG 2 cut(s) 35, 127
BseSI GKGCMC 2 cut(s) 225, 1138
BshFI GGCC 1 cut(s) 256
BshNI GGYRCC 1 cut(s) 222
BsiHKAI GWGCWC 2 cut(s) 270, 1138
BsiHKCI CYCGRG 2 cut(s) 144, 1234
BsiSI CCGG 2 cut(s) 109, 476
BslFI GGGAC 4 cut(s) 154, 213, 344, 968
BslI CCNNNNNNNGG 3 cut(s) 322, 991, 1235
BsmAI GTCTC 2 cut(s) 109, 962
BsmFI GGGAC 4 cut(s) 154, 213, 344, 968
BsmI GAATGC 2 cut(s) 829, 1222
BsnI GGCC 1 cut(s) 256
BsoBI CYCGRG 2 cut(s) 144, 1234
Bsp1286I GDGCHC 3 cut(s) 225, 270, 1138
Bsp13I TCCGGA 2 cut(s) 108, 475
Bsp1407I TGTACA 1 cut(s) 1143
Bsp143I GATC 6 cut(s) 105, 165, 318, 697, 842, 940
Bsp19I CCATGG 1 cut(s) 286
BspACI CCGC 5 cut(s) 26, 253, 708, 774, 798
BspANI GGCC 1 cut(s) 256
BspCNI CTCAG 1 cut(s) 754
BspEI TCCGGA 2 cut(s) 108, 475
BspLI GGNNCC 3 cut(s) 201, 224, 984
BspMI ACCTGC 2 cut(s) 841, 959
BspPI GGATC 4 cut(s) 100, 692, 837, 948
BspT107I GGYRCC 1 cut(s) 222
BsrGI TGTACA 1 cut(s) 1143
BsrI ACTGG 2 cut(s) 941, 1199
BssECI CCNNGG 5 cut(s) 51, 286, 501, 818, 1233
BssMI GATC 6 cut(s) 105, 165, 318, 697, 842, 940
BssT1I CCWWGG 3 cut(s) 51, 286, 818
Bst2UI CCWGG 1 cut(s) 503
Bst4CI ACNGT 4 cut(s) 16, 227, 382, 889
Bst6I CTCTTC 6 cut(s) 425, 587, 668, 761, 1194, 1206
BstAPI GCANNNNNTGC 1 cut(s) 833
BstAUI TGTACA 1 cut(s) 1143
BstDEI CTNAG 2 cut(s) 711, 762
BstDSI CCRYGG 1 cut(s) 286
BstF5I GGATG 2 cut(s) 1000, 1092
BstHHI GCGC 1 cut(s) 1060
BstKTI GATC 6 cut(s) 108, 168, 321, 700, 845, 943
BstMAI GTCTC 2 cut(s) 109, 962
BstMBI GATC 6 cut(s) 105, 165, 318, 697, 842, 940
BstMWI GCNNNNNNNGC 2 cut(s) 807, 833
BstNI CCWGG 1 cut(s) 503
BstNSI RCATGY 6 cut(s) 343, 376, 589, 1058, 1068, 1134
BstSCI CCNGG 1 cut(s) 501
BstSLI GKGCMC 2 cut(s) 225, 1138
BstV2I GAAGAC 2 cut(s) 897, 1041
BstX2I RGATCY 2 cut(s) 697, 842
BstYI RGATCY 2 cut(s) 697, 842
BsuI GTATCC 1 cut(s) 73
BsuRI GGCC 1 cut(s) 256
BtgI CCRYGG 1 cut(s) 286
BtsCI GGATG 2 cut(s) 1000, 1092
BtsIMutI CAGTG 5 cut(s) 297, 387, 419, 885, 1192
BveI ACCTGC 2 cut(s) 841, 959
CfoI GCGC 1 cut(s) 1060
Cfr13I GGNCC 3 cut(s) 200, 878, 982
Csp6I GTAC 3 cut(s) 208, 580, 1144
CviAII CATG 9 cut(s) 287, 322, 340, 363, 373, 586, 1055, 1065, 1131
CviQI GTAC 3 cut(s) 208, 580, 1144
DdeI CTNAG 2 cut(s) 711, 762
DpnI GATC 6 cut(s) 107, 167, 320, 699, 844, 942
DpnII GATC 6 cut(s) 105, 165, 318, 697, 842, 940
Eam1104I CTCTTC 6 cut(s) 425, 587, 668, 761, 1194, 1206
EarI CTCTTC 6 cut(s) 425, 587, 668, 761, 1194, 1206
EciI GGCGGA 1 cut(s) 41
Eco130I CCWWGG 3 cut(s) 51, 286, 818
Eco47I GGWCC 3 cut(s) 200, 878, 982
Eco57I CTGAAG 1 cut(s) 117
Eco88I CYCGRG 2 cut(s) 144, 1234
EcoRII CCWGG 1 cut(s) 501
EcoT14I CCWWGG 3 cut(s) 51, 286, 818
ErhI CCWWGG 3 cut(s) 51, 286, 818
FaeI CATG 9 cut(s) 290, 325, 343, 366, 376, 589, 1058, 1068, 1134
FaqI GGGAC 4 cut(s) 154, 213, 344, 968
FatI CATG 9 cut(s) 286, 321, 339, 362, 372, 585, 1054, 1064, 1130
FbaI TGATCA 1 cut(s) 318
Fnu4HI GCNGC 3 cut(s) 254, 775, 799
FokI GGATG 2 cut(s) 1007, 1079
Fsp4HI GCNGC 3 cut(s) 254, 775, 799
FspAI RTGCGCAY 1 cut(s) 1059
FspBI CTAG 2 cut(s) 450, 954
FspI TGCGCA 1 cut(s) 1059
GlaI GCGC 1 cut(s) 1059
GluI GCNGC 3 cut(s) 254, 775, 799
HaeIII GGCC 1 cut(s) 256
HapII CCGG 2 cut(s) 109, 476
HhaI GCGC 1 cut(s) 1060
Hin1II CATG 9 cut(s) 290, 325, 343, 366, 376, 589, 1058, 1068, 1134
Hin6I GCGC 1 cut(s) 1058
HinP1I GCGC 1 cut(s) 1058
HinfI GANTC 4 cut(s) 142, 357, 409, 1040
HpaII CCGG 2 cut(s) 109, 476
HphI GGTGA 3 cut(s) 697, 1093, 1218
Hpy166II GTNNAC 6 cut(s) 232, 280, 378, 647, 934, 1136
Hpy188I TCNGA 2 cut(s) 571, 945
Hpy188III TCNNGA 5 cut(s) 109, 169, 476, 959, 1157
Hpy8I GTNNAC 6 cut(s) 232, 280, 378, 647, 934, 1136
HpyAV CCTTC 9 cut(s) 70, 92, 154, 166, 620, 742, 797, 1024, 1076
HpyCH4III ACNGT 4 cut(s) 16, 227, 382, 889
HpyCH4IV ACGT 2 cut(s) 5, 1149
HpyF10VI GCNNNNNNNGC 2 cut(s) 807, 833
HpyF3I CTNAG 2 cut(s) 711, 762
HpySE526I ACGT 2 cut(s) 5, 1149
Hsp92II CATG 9 cut(s) 290, 325, 343, 366, 376, 589, 1058, 1068, 1134
HspAI GCGC 1 cut(s) 1058
Kpn2I TCCGGA 2 cut(s) 108, 475
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 6 cut(s) 105, 165, 318, 697, 842, 940
LweI GCATC 3 cut(s) 851, 1101, 1163
MaeI CTAG 2 cut(s) 450, 954
MaeII ACGT 2 cut(s) 5, 1149
MaeIII GTNAC 4 cut(s) 335, 368, 417, 1108
MalI GATC 6 cut(s) 107, 167, 320, 699, 844, 942
MboI GATC 6 cut(s) 105, 165, 318, 697, 842, 940
MflI RGATCY 2 cut(s) 697, 842
MhlI GDGCHC 3 cut(s) 225, 270, 1138
MluCI AATT 1 cut(s) 1222
MlyI GAGTC 3 cut(s) 136, 366, 1034
MmeI TCCRAC 1 cut(s) 549
MroI TCCGGA 2 cut(s) 108, 475
MroXI GAANNNNTTC 1 cut(s) 651
MseI TTAA 2 cut(s) 9, 692
MslI CAYNNNNRTG 4 cut(s) 383, 402, 890, 1014
MspI CCGG 2 cut(s) 109, 476
MspR9I CCNGG 1 cut(s) 503
Mva1269I GAATGC 2 cut(s) 829, 1222
MvaI CCWGG 1 cut(s) 503
MwoI GCNNNNNNNGC 2 cut(s) 807, 833
NcoI CCATGG 1 cut(s) 286
NdeII GATC 6 cut(s) 105, 165, 318, 697, 842, 940
NlaIII CATG 9 cut(s) 290, 325, 343, 366, 376, 589, 1058, 1068, 1134
NlaIV GGNNCC 3 cut(s) 201, 224, 984
NmuCI GTSAC 3 cut(s) 368, 417, 1108
NsbI TGCGCA 1 cut(s) 1059
NspI RCATGY 6 cut(s) 343, 376, 589, 1058, 1068, 1134
OliI CACNNNNGTG 1 cut(s) 890
PaeR7I CTCGAG 1 cut(s) 144
PaqCI CACCTGC 1 cut(s) 841
PciI ACATGT 5 cut(s) 339, 372, 585, 1064, 1130
PctI GAATGC 2 cut(s) 829, 1222
PdmI GAANNNNTTC 1 cut(s) 651
PfeI GAWTC 1 cut(s) 409
PkrI GCNGC 3 cut(s) 255, 776, 800
PleI GAGTC 3 cut(s) 136, 365, 1034
PpsI GAGTC 3 cut(s) 136, 365, 1034
PscI ACATGT 5 cut(s) 339, 372, 585, 1064, 1130
Psp6I CCWGG 1 cut(s) 501
PspGI CCWGG 1 cut(s) 501
PspN4I GGNNCC 3 cut(s) 201, 224, 984
PspPI GGNCC 3 cut(s) 200, 878, 982
PspXI VCTCGAGB 1 cut(s) 144
PsuI RGATCY 2 cut(s) 697, 842
RsaI GTAC 3 cut(s) 209, 581, 1145
RsaNI GTAC 3 cut(s) 208, 580, 1144
RseI CAYNNNNRTG 4 cut(s) 383, 402, 890, 1014
SaqAI TTAA 2 cut(s) 9, 692
SatI GCNGC 3 cut(s) 254, 775, 799
Sau3AI GATC 6 cut(s) 105, 165, 318, 697, 842, 940
Sau96I GGNCC 3 cut(s) 200, 878, 982
ScaI AGTACT 1 cut(s) 209
SchI GAGTC 3 cut(s) 136, 366, 1034
ScrFI CCNGG 1 cut(s) 503
SduI GDGCHC 3 cut(s) 225, 270, 1138
SfaNI GCATC 3 cut(s) 851, 1101, 1163
Sfr274I CTCGAG 1 cut(s) 144
SinI GGWCC 3 cut(s) 200, 878, 982
SlaI CTCGAG 1 cut(s) 144
SmiMI CAYNNNNRTG 4 cut(s) 383, 402, 890, 1014
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
Sse9I AATT 1 cut(s) 1222
SsiI CCGC 5 cut(s) 26, 253, 708, 774, 798
SspMI CTAG 2 cut(s) 450, 954
StyD4I CCNGG 1 cut(s) 501
StyI CCWWGG 3 cut(s) 51, 286, 818
TaaI ACNGT 4 cut(s) 16, 227, 382, 889
TaiI ACGT 2 cut(s) 8, 1152
TaqI TCGA 3 cut(s) 145, 440, 960
TasI AATT 1 cut(s) 1222
TatI WGTACW 2 cut(s) 207, 1143
TauI GCSGC 3 cut(s) 256, 777, 801
TfiI GAWTC 1 cut(s) 409
Tru1I TTAA 2 cut(s) 9, 692
Tru9I TTAA 2 cut(s) 9, 692
TscAI CASTG 5 cut(s) 304, 387, 426, 892, 1199
TseFI GTSAC 3 cut(s) 368, 417, 1108
Tsp45I GTSAC 3 cut(s) 368, 417, 1108
TspDTI ATGAA 6 cut(s) 401, 801, 839, 897, 1011, 1035
TspRI CASTG 5 cut(s) 304, 387, 426, 892, 1199
VneI GTGCAC 1 cut(s) 1134
VpaK11BI GGWCC 3 cut(s) 200, 878, 982
XceI RCATGY 6 cut(s) 343, 376, 589, 1058, 1068, 1134
XcmI CCANNNNNNNNNTGG 1 cut(s) 499
XhoI CTCGAG 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 651
XspI CTAG 2 cut(s) 450, 954
ZrmI AGTACT 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.