Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

24988854 .. 24990118

Gene Structure 1265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22041.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCGCTCAATCTTTCCAGACATGGATCGCCTCGTCCTAAGGTATACTCTGCAGTCCTCCGTCTGTACACGCATTTCTTCTTGAGTGCCCCGTTAGCGTCTGATAACTCCACCAGATCGCAAGTCTGGCTTTCATGCAAGGATTATCTTTCATCTTGCATGGCTCCCGACCACTACTCCCCCGTGGTCTCACTGGCGGATGTATATAGAGACCAAGAGATGAGTAAACAGTCTACAATTGATGGATTTTTCAAAAGGAAAAGAATTGAATCTGAAGCTGGTACACCAGTACCTTTTCAATTGCCTACCACTGATACAGAAGCAGCGGACGTCGACAACAAATATGGGAGGTATCCGGTTAATAAGCAAGACGAGGTTCTTCGATTATACATCAAACTTGGTCCAAATCAGCCTCAACTTAATAAGTATCCTCGATCAGGACCAGAAAATCATCTTCGAAGCTTTCAACCTACATGCGGCTTCGGAGGGGATGGGTACTCCGAGGTTAAGCATGTCGATGCGAGAGCAATCCCAGGATGGGTGACCTACCGGGAAGTTGCTCCTGAGCTGCCGGAAACAAAACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4371 Dimer_Tnp_hAT

Protein Analysis

196

Amino Acids

22.0

Weight (kDa)

8.36

Isoelectric Point (pI)

63.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	333
AccI	GTMKAC	3 cut(s)	45, 233, 333
AciI	CCGC	3 cut(s)	197, 326, 477
AclWI	GGATC	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	294
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	4 cut(s)	68, 283, 291, 497
AfiI	CCNNNNNNNGG	3 cut(s)	437, 476, 538
AgsI	TTSAA	4 cut(s)	253, 269, 299, 467
AjnI	CCWGG	1 cut(s)	532
AluBI	AGCT	3 cut(s)	278, 462, 568
AluI	AGCT	3 cut(s)	278, 462, 568
Alw26I	GTCTC	2 cut(s)	193, 204
AlwI	GGATC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	323, 568
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	401, 440
AsuC2I	CCSGG	1 cut(s)	551
AsuHPI	GGTGA	1 cut(s)	553
AsuII	TTCGAA	1 cut(s)	457
AvaII	GGWCC	2 cut(s)	401, 440
AxyI	CCTNAGG	1 cut(s)	39
BaeGI	GKGCMC	1 cut(s)	91
BaeI	ACNNNNGTAYC	4 cut(s)	273, 273, 306, 306
BbvI	GCAGC	2 cut(s)	335, 555
BccI	CCATC	3 cut(s)	236, 485, 531
BciT130I	CCWGG	1 cut(s)	534
BciVI	GTATCC	2 cut(s)	363, 438
BcnI	CCSGG	1 cut(s)	551
BcoDI	GTCTC	2 cut(s)	193, 204
BfmI	CTRYAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	2 cut(s)	363, 438
BisI	GCNGC	3 cut(s)	324, 478, 569
BlsI	GCNGC	3 cut(s)	325, 479, 570
Bme1390I	CCNGG	2 cut(s)	534, 551
Bme18I	GGWCC	2 cut(s)	401, 440
BmgT120I	GGNCC	2 cut(s)	401, 440
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	2 cut(s)	534, 551
BmsI	GCATC	1 cut(s)	508
Bpu10I	CCTNAGC	1 cut(s)	564
Bpu14I	TTCGAA	1 cut(s)	457
BpuEI	CTTGAG	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	551
BsaHI	GRCGYC	1 cut(s)	330
BsaI	GGTCTC	2 cut(s)	193, 204
BsaJI	CCNNGG	3 cut(s)	183, 501, 532
BsaWI	WCCGGW	1 cut(s)	355
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	3 cut(s)	437, 476, 538
Bse1I	ACTGG	2 cut(s)	198, 287
Bse21I	CCTNAGG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	534
BseDI	CCNNGG	3 cut(s)	183, 501, 532
BseGI	GGATG	3 cut(s)	205, 496, 542
BseLI	CCNNNNNNNGG	3 cut(s)	437, 476, 538
BseMII	CTCAG	1 cut(s)	555
BseNI	ACTGG	2 cut(s)	198, 287
BseSI	GKGCMC	1 cut(s)	91
BseXI	GCAGC	2 cut(s)	335, 555
BsiSI	CCGG	3 cut(s)	356, 550, 572
BslI	CCNNNNNNNGG	3 cut(s)	437, 476, 538
BsmAI	GTCTC	2 cut(s)	193, 204
Bso31I	GGTCTC	2 cut(s)	193, 204
Bsp119I	TTCGAA	1 cut(s)	457
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp1407I	TGTACA	1 cut(s)	66
Bsp143I	GATC	3 cut(s)	26, 116, 434
BspACI	CCGC	3 cut(s)	197, 326, 477
BspCNI	CTCAG	1 cut(s)	556
BspLI	GGNNCC	1 cut(s)	165
BspMAI	CTGCAG	1 cut(s)	55
BspPI	GGATC	1 cut(s)	34
BspT104I	TTCGAA	1 cut(s)	457
BspTNI	GGTCTC	2 cut(s)	193, 204
BsrGI	TGTACA	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	198, 287
BssECI	CCNNGG	3 cut(s)	183, 501, 532
BssMI	GATC	3 cut(s)	26, 116, 434
BssNAI	GTATAC	1 cut(s)	46
BssNI	GRCGYC	1 cut(s)	330
Bst1107I	GTATAC	1 cut(s)	46
Bst2UI	CCWGG	1 cut(s)	534
Bst4CI	ACNGT	2 cut(s)	231, 585
BstACI	GRCGYC	1 cut(s)	330
BstAUI	TGTACA	1 cut(s)	66
BstBI	TTCGAA	1 cut(s)	457
BstDEI	CTNAG	2 cut(s)	39, 564
BstDSI	CCRYGG	1 cut(s)	183
BstEII	GGTNACC	1 cut(s)	541
BstENI	CCTNNNNNAGG	1 cut(s)	435
BstF5I	GGATG	3 cut(s)	205, 496, 542
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	29, 119, 437
BstMAI	GTCTC	2 cut(s)	193, 204
BstMBI	GATC	3 cut(s)	26, 116, 434
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 127
BstNI	CCWGG	1 cut(s)	534
BstNSI	RCATGY	2 cut(s)	477, 515
BstPI	GGTNACC	1 cut(s)	541
BstSCI	CCNGG	2 cut(s)	532, 549
BstSFI	CTRYAG	1 cut(s)	51
BstSLI	GKGCMC	1 cut(s)	91
BstV1I	GCAGC	2 cut(s)	335, 555
BstZ17I	GTATAC	1 cut(s)	46
Bsu36I	CCTNAGG	1 cut(s)	39
BsuI	GTATCC	2 cut(s)	363, 438
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	3 cut(s)	205, 496, 542
BtsIMutI	CAGTG	2 cut(s)	191, 309
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	2 cut(s)	401, 440
CseI	GACGC	1 cut(s)	87
Csp6I	GTAC	4 cut(s)	67, 282, 290, 496
CviAII	CATG	5 cut(s)	23, 135, 160, 474, 512
CviJI	RGCY	7 cut(s)	130, 164, 278, 412, 462, 480, 568
CviKI_1	RGCY	7 cut(s)	130, 164, 278, 412, 462, 480, 568
CviQI	GTAC	4 cut(s)	67, 282, 290, 496
DdeI	CTNAG	2 cut(s)	39, 564
DpnI	GATC	3 cut(s)	28, 118, 436
DpnII	GATC	3 cut(s)	26, 116, 434
EciI	GGCGGA	1 cut(s)	212
Eco31I	GGTCTC	2 cut(s)	193, 204
Eco47I	GGWCC	2 cut(s)	401, 440
Eco57I	CTGAAG	1 cut(s)	294
Eco81I	CCTNAGG	1 cut(s)	39
Eco91I	GGTNACC	1 cut(s)	541
EcoNI	CCTNNNNNAGG	1 cut(s)	435
EcoO65I	GGTNACC	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	532
FaeI	CATG	5 cut(s)	26, 138, 163, 477, 515
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FatI	CATG	5 cut(s)	22, 134, 159, 473, 511
FblI	GTMKAC	3 cut(s)	45, 233, 333
Fnu4HI	GCNGC	3 cut(s)	324, 478, 569
FokI	GGATG	3 cut(s)	212, 503, 549
Fsp4HI	GCNGC	3 cut(s)	324, 478, 569
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	324, 478, 569
HaeII	RGCGCY	1 cut(s)	8
HapII	CCGG	3 cut(s)	356, 550, 572
HgaI	GACGC	1 cut(s)	87
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	5 cut(s)	26, 138, 163, 477, 515
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	460
HinfI	GANTC	1 cut(s)	269
HpaII	CCGG	3 cut(s)	356, 550, 572
HphI	GGTGA	1 cut(s)	553
Hpy166II	GTNNAC	6 cut(s)	46, 69, 227, 234, 284, 334
Hpy188I	TCNGA	4 cut(s)	103, 274, 485, 502
Hpy188III	TCNNGA	5 cut(s)	18, 82, 167, 438, 563
Hpy8I	GTNNAC	6 cut(s)	46, 69, 227, 234, 284, 334
Hpy99I	CGWCG	1 cut(s)	335
HpyCH4III	ACNGT	2 cut(s)	231, 585
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	3 cut(s)	53, 138, 159
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 127
HpyF3I	CTNAG	2 cut(s)	39, 564
HpySE526I	ACGT	1 cut(s)	330
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	5 cut(s)	26, 138, 163, 477, 515
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	3 cut(s)	26, 116, 434
LmnI	GCTCC	2 cut(s)	169, 565
Lsp1109I	GCAGC	2 cut(s)	335, 555
LweI	GCATC	1 cut(s)	508
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	3 cut(s)	28, 118, 436
MboI	GATC	3 cut(s)	26, 116, 434
MboII	GAAGA	3 cut(s)	70, 371, 446
MfeI	CAATTG	2 cut(s)	237, 299
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	3 cut(s)	237, 264, 299
MnlI	CCTC	8 cut(s)	42, 68, 342, 367, 423, 441, 479, 496
MseI	TTAA	3 cut(s)	360, 420, 507
MslI	CAYNNNNRTG	1 cut(s)	516
MspA1I	CMGCKG	1 cut(s)	326
MspI	CCGG	3 cut(s)	356, 550, 572
MspR9I	CCNGG	2 cut(s)	534, 551
MunI	CAATTG	2 cut(s)	237, 299
MvaI	CCWGG	1 cut(s)	534
MwoI	GCNNNNNNNGC	2 cut(s)	95, 127
NciI	CCSGG	1 cut(s)	551
NdeII	GATC	3 cut(s)	26, 116, 434
NlaIII	CATG	5 cut(s)	26, 138, 163, 477, 515
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	541
NspI	RCATGY	2 cut(s)	477, 515
NspV	TTCGAA	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	3 cut(s)	325, 479, 570
Psp6I	CCWGG	1 cut(s)	532
PspEI	GGTNACC	1 cut(s)	541
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	2 cut(s)	401, 440
PstI	CTGCAG	1 cut(s)	55
RsaI	GTAC	4 cut(s)	68, 283, 291, 497
RsaNI	GTAC	4 cut(s)	67, 282, 290, 496
RseI	CAYNNNNRTG	1 cut(s)	516
SalI	GTCGAC	1 cut(s)	332
SaqAI	TTAA	3 cut(s)	360, 420, 507
SatI	GCNGC	3 cut(s)	324, 478, 569
Sau3AI	GATC	3 cut(s)	26, 116, 434
Sau96I	GGNCC	2 cut(s)	401, 440
ScrFI	CCNGG	2 cut(s)	534, 551
SduI	GDGCHC	1 cut(s)	91
SfaNI	GCATC	1 cut(s)	508
SfcI	CTRYAG	1 cut(s)	51
SfuI	TTCGAA	1 cut(s)	457
SinI	GGWCC	2 cut(s)	401, 440
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	3 cut(s)	237, 264, 299
SsiI	CCGC	3 cut(s)	197, 326, 477
StyD4I	CCNGG	2 cut(s)	532, 549
TaaI	ACNGT	2 cut(s)	231, 585
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	5 cut(s)	333, 382, 433, 457, 516
TasI	AATT	3 cut(s)	237, 264, 299
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	1 cut(s)	480
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	3 cut(s)	360, 420, 507
Tru9I	TTAA	3 cut(s)	360, 420, 507
TscAI	CASTG	2 cut(s)	198, 316
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	2 cut(s)	323, 568
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	2 cut(s)	123, 141
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	2 cut(s)	198, 316
VpaK11BI	GGWCC	2 cut(s)	401, 440
XagI	CCTNNNNNAGG	1 cut(s)	435
XceI	RCATGY	2 cut(s)	477, 515
XmiI	GTMKAC	3 cut(s)	45, 233, 333
ZraI	GACGTC	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.