Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

20581369 .. 20582775

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g16722.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGACAAAGGTTTCAATCAGACCATGTCACACCTATGAGTATATGGTGGAGCAAGCTGGGGGATTCACCACGAAGGACCTCTACAACAAGCTTGACCAACAACGACAAACCTCCCCATTTGAGAGTGATTCCAAAAGAACATTTTCCTACATGAGAACACTAGCAGCAAAAGACCCACACTTCATATGTAGATTCACTACAGATTTGGAAGACAGGTTAGTGGACATGTTTTGGCGAGATGGGCATTCATTTGTTGATTATCAATGTTATGGGGATGTGCTGATATTCGATAGCACATACAAAACCAATGTTTACAACAGGCCATTGGTTTTGTTTGTTGGGACGAACAACTATCGAGACATTGATGAGGCCATGCGTAAGGCAATTGAAACAGTGATGTTGGAAGCAAAGCACTGTCTCTGTATTTGGCACATAGGTAAAAATGCCTTAACACACTTAAAGACTGAGGAAAAGTTGAAGGCTTTTAATAGATGCATGAGGAAGTATCAAACAGTTGAGCAATTTGAAAGGTTCTGGCAGGAAATGCTTGAAGAATTTGATCTCCATGACAATTTTTGGGTCAAGAATATGTATGAAAAGAGAGACAAGTTTTGTCCAGCATTTTTCGGTGACATGTTTATGGCCGGAATGAGAAGCACACAAAGGTGTGAGGGCATGAATAAAGAATTCAAGAGGGTTCTTGGTATAGGCAAATCCCTTATGGAGCTTGTTGCGTTGATTTTAAGAGAGATCAAGAAAGAGAGCTTTATTACAATAAAGCAACGAGCAGAATGTCATGAAGATGGTAGTCATGTTTACAAGGTATCAGTTTACAAGCGGCCTGAATTTGACCACACTGTTGTTTACCACCCTGAAAAAGAGACTGACAGTGTAGAAGACCCGATTATGGTGTGTTCTTGCAAAATGTTTCAGTATAGGGGAGTGCTATGTCGTCACATGTTCACGGTGATGAAAAACGAACACATTTTTGAGCTTCACAAGTCACTGATGGTCAAGAGATGTTCAAAGGACACAAAAATTGTGTGTCAAATCCCTTATTCGCATCAATCTATGCCCAGAGAAGCATTGGAAGTGAGCATGTATGATGCTCTAACTGCCGAATGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

377

Amino Acids

44.71

Weight (kDa)

7.54

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	838
AcoI	YGGCCR	1 cut(s)	642
AcsI	RAATTY	3 cut(s)	554, 686, 845
AfiI	CCNNNNNNNGG	1 cut(s)	907
AflIII	ACRYGT	3 cut(s)	225, 633, 957
AgsI	TTSAA	7 cut(s)	15, 389, 478, 527, 551, 691, 1026
AleI	CACNNNNGTG	1 cut(s)	664
AluBI	AGCT	5 cut(s)	56, 91, 727, 765, 994
AluI	AGCT	5 cut(s)	56, 91, 727, 765, 994
Alw26I	GTCTC	4 cut(s)	351, 422, 597, 875
AoxI	GGCC	4 cut(s)	320, 369, 642, 839
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	3 cut(s)	554, 686, 845
Asp700I	GAANNNNTTC	1 cut(s)	142
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	3 cut(s)	58, 641, 979
AvaII	GGWCC	1 cut(s)	76
BarI	GAAGNNNNNNTAC	2 cut(s)	65, 97
BbsI	GAAGAC	2 cut(s)	216, 903
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	3 cut(s)	233, 797, 1003
BcoDI	GTCTC	4 cut(s)	351, 422, 597, 875
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	198
BisI	GCNGC	2 cut(s)	165, 839
BlsI	GCNGC	2 cut(s)	166, 840
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	76
BmsI	GCATC	3 cut(s)	482, 1072, 1096
BpiI	GAAGAC	2 cut(s)	216, 903
Bsc4I	CCNNNNNNNGG	1 cut(s)	907
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	907
BseMII	CTCAG	1 cut(s)	456
BseXI	GCAGC	1 cut(s)	176
BseYI	CCCAGC	1 cut(s)	56
BshFI	GGCC	4 cut(s)	322, 371, 644, 841
BsiSI	CCGG	1 cut(s)	645
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	1 cut(s)	907
BsmAI	GTCTC	4 cut(s)	351, 422, 597, 875
BsmFI	GGGAC	1 cut(s)	355
BsmI	GAATGC	2 cut(s)	244, 1127
BsnI	GGCC	4 cut(s)	322, 371, 644, 841
Bsp143I	GATC	2 cut(s)	559, 750
BspACI	CCGC	1 cut(s)	838
BspANI	GGCC	4 cut(s)	322, 371, 644, 841
BspCNI	CTCAG	1 cut(s)	457
BspHI	TCATGA	1 cut(s)	796
BssMI	GATC	2 cut(s)	559, 750
Bst4CI	ACNGT	6 cut(s)	394, 416, 514, 859, 890, 967
BstAPI	GCANNNNNTGC	1 cut(s)	544
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	1 cut(s)	465
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	2 cut(s)	562, 753
BstMAI	GTCTC	4 cut(s)	351, 422, 597, 875
BstMBI	GATC	2 cut(s)	559, 750
BstMWI	GCNNNNNNNGC	3 cut(s)	241, 544, 1115
BstNSI	RCATGY	4 cut(s)	229, 637, 961, 1102
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	1 cut(s)	176
BstV2I	GAAGAC	2 cut(s)	216, 903
BsuRI	GGCC	4 cut(s)	322, 371, 644, 841
BtsCI	GGATG	1 cut(s)	280
BtsIMutI	CAGTG	5 cut(s)	399, 412, 855, 895, 1004
Cac8I	GCNNGC	1 cut(s)	54
CciI	TCATGA	1 cut(s)	796
Cfr13I	GGNCC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	2 cut(s)	561, 752
DpnII	GATC	2 cut(s)	559, 750
EaeI	YGGCCR	1 cut(s)	642
Eco47I	GGWCC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	686
EcoT22I	ATGCAT	1 cut(s)	497
FaqI	GGGAC	1 cut(s)	355
FauNDI	CATATG	1 cut(s)	185
Fnu4HI	GCNGC	2 cut(s)	165, 839
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	2 cut(s)	165, 839
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	2 cut(s)	165, 839
GsaI	CCCAGC	1 cut(s)	60
HaeIII	GGCC	4 cut(s)	322, 371, 644, 841
HapII	CCGG	1 cut(s)	645
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	3 cut(s)	63, 128, 192
HpaII	CCGG	1 cut(s)	645
HphI	GGTGA	3 cut(s)	58, 641, 979
Hpy166II	GTNNAC	6 cut(s)	223, 313, 817, 832, 865, 963
Hpy188I	TCNGA	1 cut(s)	20
Hpy188III	TCNNGA	6 cut(s)	356, 583, 691, 754, 797, 1015
Hpy8I	GTNNAC	6 cut(s)	223, 313, 817, 832, 865, 963
HpyAV	CCTTC	2 cut(s)	67, 472
HpyCH4III	ACNGT	6 cut(s)	394, 416, 514, 859, 890, 967
HpyCH4V	TGCA	3 cut(s)	495, 921, 1125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	241, 544, 1115
HpyF3I	CTNAG	1 cut(s)	465
Kzo9I	GATC	2 cut(s)	559, 750
LmnI	GCTCC	2 cut(s)	49, 724
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	3 cut(s)	482, 1072, 1096
MaeI	CTAG	1 cut(s)	161
MaeIII	GTNAC	4 cut(s)	26, 629, 953, 1002
MalI	GATC	2 cut(s)	561, 752
MboI	GATC	2 cut(s)	559, 750
MboII	GAAGA	4 cut(s)	221, 563, 812, 908
MfeI	CAATTG	2 cut(s)	384, 1126
MluCI	AATT	8 cut(s)	384, 521, 554, 571, 686, 845, 1038, 1126
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	7 cut(s)	89, 121, 361, 460, 492, 664, 687
Mph1103I	ATGCAT	1 cut(s)	497
MroXI	GAANNNNTTC	1 cut(s)	142
MseI	TTAA	4 cut(s)	449, 458, 486, 743
MslI	CAYNNNNRTG	5 cut(s)	33, 638, 664, 801, 968
MspI	CCGG	1 cut(s)	645
MunI	CAATTG	2 cut(s)	384, 1126
Mva1269I	GAATGC	2 cut(s)	244, 1127
MwoI	GCNNNNNNNGC	3 cut(s)	241, 544, 1115
NdeI	CATATG	1 cut(s)	185
NdeII	GATC	2 cut(s)	559, 750
NmuCI	GTSAC	4 cut(s)	26, 629, 953, 1002
NsiI	ATGCAT	1 cut(s)	497
NspI	RCATGY	4 cut(s)	229, 637, 961, 1102
OliI	CACNNNNGTG	1 cut(s)	664
PagI	TCATGA	1 cut(s)	796
PciI	ACATGT	3 cut(s)	225, 633, 957
PctI	GAATGC	2 cut(s)	244, 1127
PdmI	GAANNNNTTC	1 cut(s)	142
PfeI	GAWTC	3 cut(s)	63, 128, 192
PflFI	GACNNNGTC	1 cut(s)	24
PkrI	GCNGC	2 cut(s)	166, 840
PpuMI	RGGWCCY	1 cut(s)	76
PscI	ACATGT	3 cut(s)	225, 633, 957
Psp5II	RGGWCCY	1 cut(s)	76
PspFI	CCCAGC	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	76
PspPPI	RGGWCCY	1 cut(s)	76
PsyI	GACNNNGTC	1 cut(s)	24
RseI	CAYNNNNRTG	5 cut(s)	33, 638, 664, 801, 968
SaqAI	TTAA	4 cut(s)	449, 458, 486, 743
SatI	GCNGC	2 cut(s)	165, 839
Sau3AI	GATC	2 cut(s)	559, 750
Sau96I	GGNCC	1 cut(s)	76
SfaNI	GCATC	3 cut(s)	482, 1072, 1096
SfcI	CTRYAG	1 cut(s)	198
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	5 cut(s)	33, 638, 664, 801, 968
Sse9I	AATT	8 cut(s)	384, 521, 554, 571, 686, 845, 1038, 1126
SsiI	CCGC	1 cut(s)	838
SspMI	CTAG	1 cut(s)	161
TaaI	ACNGT	6 cut(s)	394, 416, 514, 859, 890, 967
TaqI	TCGA	2 cut(s)	288, 355
TasI	AATT	8 cut(s)	384, 521, 554, 571, 686, 845, 1038, 1126
TauI	GCSGC	1 cut(s)	841
TfiI	GAWTC	3 cut(s)	63, 128, 192
Tru1I	TTAA	4 cut(s)	449, 458, 486, 743
Tru9I	TTAA	4 cut(s)	449, 458, 486, 743
TscAI	CASTG	5 cut(s)	399, 419, 862, 895, 1011
TseFI	GTSAC	4 cut(s)	26, 629, 953, 1002
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	4 cut(s)	26, 629, 953, 1002
TspDTI	ATGAA	6 cut(s)	172, 237, 609, 692, 813, 986
TspRI	CASTG	5 cut(s)	399, 419, 862, 895, 1011
Tth111I	GACNNNGTC	1 cut(s)	24
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	3 cut(s)	554, 686, 845
XceI	RCATGY	4 cut(s)	229, 637, 961, 1102
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1084
XmnI	GAANNNNTTC	1 cut(s)	142
XspI	CTAG	1 cut(s)	161
Zsp2I	ATGCAT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.