Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

63024878 .. 63028871

Gene Structure 3994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G040490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2256 bp

ATGGACAACACAACAAAGGATTGCAACAAGGAAGGGACTCGAGCTGATGAAACACGAACTGATGATGAAGTGTTCAACGATGTCCCAGACTACAGAAGATTGAAAGTTGAAGACGTGAAGGCTGTGACGTTTAAGACAGTAGAGGACGCGGAGAGGTTCTATTCTGCATATTCCTTGGCACTTGGCTTTGGATTTAGGAAGGATACCAAAGGAGAGGCTGAAGGTACGATCCGGAGGAGACAATGGCTTTGCAACAAGCAAGGGACTCGAGCTAAAAACTGGGTCGTACTGGACGGAAGGGGTCGTACTCCTCGGAAAATTACAAGGGTAAATTGCAAGGCTAAGTTCAGGGTTAATTACAACGAGCTTGTAGGAGCTTATGTGGTGAAAGCCTTTGTTCCAGAGCATTCTCACGACTTAGCAACAGGAAACCAGACTGCCTTCATTCGTTCGCATCGAAATGTCGGCAAATCAGACTTGGCCCGTGCAAATACAATGTCTAAAGTGTCAATCAGACCTTGCCATGCGTATGAGTACATGACAATGGGATTTACTGAGAAGGACCTATACAACAAGCTTGACCAACAACGGCGCACCACTTCCTTTGAGAGTGACTCCGAAGGCGCACTTGCCTACATGAACGCTTTGGCAGCACAAGACCCATACTTCTACTGCAGGTTCAATGTAGATATAGAAGACAGGTTAGCAAACATGTTTTGGCGAGATGGGCATGCATTTGTTGATTTTATGTGTTACGGGGATGTGCTGATCTTTGATAGCACATACAAAACCAATGTTTACAAAAAGCCATTGGTTTTGTTTATTGGGTCAAACAATCATCGGGGAAGTATTTTGTTTGGTGCTGCTCTTCTTGTCGATGAAACGGTGGAGACATACACTTGGCTGTTGCGTTCGTTTTTGGATGCAATGAATGGGAAGATGCCAATAGCTGTACTCACAGATGGAGATGAGGCCATGCGTAGTGCAATTGAAGACGTGATGCCACAAGCAAAGCATCGTCTTTGTGCTTGGCACCTTTCCAGAAATGCCAACACTAATTTGAAGTGCGACGAAAAGTTGAAAGCTTTTAATAGGTGCATGAGAAAATTCCAAACTGTGGAGCAGTTTGAAGTAATGTGGCACGACATGGTGGAGAAATTCGATCTCCACAACAGTTTCTGGATCAACATGATGTATGAGAAACGAGACAAGTGGGCTCAAGCATTTTTCAGGAACCATTTTATGGCTGGCATGAGAAGCACGCAGAGGTGTGAGGGTATGAATAGTCGTTCCGAGGATGGACGAGCACTCATGAGATTGAGAAACAATCAAGTAAGGGATGACTTTAACACTATGAACTCAACCCCTGTTCTCGAAACTCACCTAAAAGACTTGGAGAATCATGCAGCTTCTATATACACATACGATGTGTTTAAGTGGGTTAGGAAGGAGATCAGGAAGGAGAGCCAAGCCACACTACTACAGGGACCAGAGTACTTTGAAGATGGGCACCGTGTTTACACAATGTCAGCTTACAAGCGGCCTGATTTTGAGCACAAGGTAGTTTACTACCATGGGAAAAACACTGAAAGTGCAACAGACCCGATCATGGTATGTTCTTGTAACATGTTTCAGTATAAGGGAGTCTCATGTCGTCACATGTTCACAGTGATAAAACACAAATACATCAATGAGATTCCAAAGTCACTGATTGTGAAGAGATGGTCGAAGTCTGCTAGAGATGTGTGTTCAATCAAATATCCGAAACAAGATATTTCCAAAGAAGCCCTGGAAGTTAGTAGGTATGGTGCTATGAGTGTTGATTGCAACCAAATGTGTTTTTATGCTTCTAAGTCGGAAGCAGGGTACAACATGCTGAAGAGAGAGATAAATAGACTGACAACAATAATGAAAGGGTTGTTGAGAGGCTGTGAACAGGTTCAAAGTATAGCTACACCGAAGAGTAAAGGTTGCAGAGAAGCCAAAAGCGAAAAAAAGTATGAGCCATCCAAACGACCGATTACTTGTAGTTATTGCAAAGGTCCTGGCCACAATACTCAGACATGTGAAGATAGGAAGGAGAAAGAAGCTGATAAGAGAGGCGGCAAAGAAGGTGAAAAGACAGGCAGCGAAGGAAGCAACACTCCTTGGAATGCAACACCTGCGAAAAGATCCATTCATTGTAGTAGATGCAAAGGTGCTGGGCACACATATCGTACATGTAAAAAGGTAACCTCATTTTGTAGTAGTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

751

Amino Acids

86.78

Weight (kDa)

9.13

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAR1	PF03101	52 - 141	1.5e-16	FAR1 DNA-binding domain
MULE	PF10551	255 - 349	7.9e-26	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2170
Acc36I	ACCTGC	2 cut(s)	666, 2170
AccB1I	GGYRCC	2 cut(s)	1032, 1509
AccB7I	CCANNNNNTGG	2 cut(s)	1117, 1243
AccII	CGCG	1 cut(s)	149
AccIII	TCCGGA	1 cut(s)	231
AciI	CCGC	3 cut(s)	149, 1540, 2103
AclWI	GGATC	3 cut(s)	223, 1190, 2166
AcoI	YGGCCR	1 cut(s)	2047
AcsI	RAATTY	2 cut(s)	1106, 1157
AcuI	CTGAAG	2 cut(s)	240, 1898
AfaI	GTAC	8 cut(s)	226, 288, 307, 536, 954, 1496, 1868, 2218
AfiI	CCNNNNNNNGG	3 cut(s)	1117, 1243, 1609
AflIII	ACRYGT	5 cut(s)	711, 1626, 1659, 2063, 2219
AjiI	CACGTC	2 cut(s)	115, 997
AjnI	CCWGG	2 cut(s)	1788, 2044
Alw21I	GWGCWC	2 cut(s)	1309, 1557
Alw26I	GTCTC	4 cut(s)	232, 884, 1200, 1651
AlwI	GGATC	3 cut(s)	223, 1190, 2166
AlwNI	CAGNNNCTG	1 cut(s)	1179
Ama87I	CYCGRG	2 cut(s)	39, 267
Aor13HI	TCCGGA	1 cut(s)	231
AoxI	GGCC	4 cut(s)	480, 972, 1541, 2047
ApeKI	GCWGC	4 cut(s)	650, 863, 1406, 2127
ApoI	RAATTY	2 cut(s)	1106, 1157
ArsI	GACNNNNNNTTYG	4 cut(s)	231, 263, 482, 514
Asp700I	GAANNNNTTC	1 cut(s)	1938
AspLEI	GCGC	2 cut(s)	594, 626
AspS9I	GGNCC	4 cut(s)	481, 562, 1487, 2042
AsuHPI	GGTGA	3 cut(s)	397, 1373, 2126
AvaI	CYCGRG	2 cut(s)	39, 267
AvaII	GGWCC	3 cut(s)	562, 1487, 2042
BaeGI	GKGCMC	2 cut(s)	1512, 2208
BalI	TGGCCA	1 cut(s)	2049
BanI	GGYRCC	2 cut(s)	1032, 1509
BanII	GRGCYC	1 cut(s)	1219
BarI	GAAGNNNNNNTAC	4 cut(s)	289, 321, 551, 583
BbsI	GAAGAC	3 cut(s)	117, 702, 999
Bbv12I	GWGCWC	2 cut(s)	1309, 1557
BbvI	GCAGC	4 cut(s)	662, 850, 1418, 2139
BccI	CCATC	6 cut(s)	719, 956, 1292, 1499, 1716, 2014
BceAI	ACGGC	1 cut(s)	605
BcgI	CGANNNNNNTGC	4 cut(s)	248, 282, 2195, 2229
BciT130I	CCWGG	2 cut(s)	1790, 2046
BciVI	GTATCC	1 cut(s)	196
BcoDI	GTCTC	4 cut(s)	232, 884, 1200, 1651
BfaI	CTAG	1 cut(s)	1737
BfmI	CTRYAG	3 cut(s)	91, 673, 1481
BfuAI	ACCTGC	2 cut(s)	666, 2170
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	6 cut(s)	651, 864, 1407, 1541, 2104, 2128
BlsI	GCNGC	6 cut(s)	652, 865, 1408, 1542, 2105, 2129
BmcAI	AGTACT	1 cut(s)	1496
Bme1390I	CCNGG	2 cut(s)	1790, 2046
Bme18I	GGWCC	3 cut(s)	562, 1487, 2042
BmeT110I	CYCGRG	2 cut(s)	39, 267
BmgBI	CACGTC	2 cut(s)	115, 997
BmgT120I	GGNCC	4 cut(s)	481, 562, 1487, 2042
BmiI	GGNNCC	4 cut(s)	1034, 1235, 1488, 1511
BmrFI	CCNGG	2 cut(s)	1790, 2046
BmrI	ACTGGG	1 cut(s)	289
BmsI	GCATC	6 cut(s)	463, 913, 930, 990, 1024, 2180
BmuI	ACTGGG	1 cut(s)	289
BpiI	GAAGAC	3 cut(s)	117, 702, 999
BplI	GAGNNNNNCTC	2 cut(s)	599, 631
BpuEI	CTTGAG	1 cut(s)	1203
BsaJI	CCNNGG	6 cut(s)	174, 311, 1293, 1573, 1788, 2147
BsaWI	WCCGGW	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	3 cut(s)	1117, 1243, 1609
Bse1I	ACTGG	2 cut(s)	284, 294
Bse3DI	GCAATG	1 cut(s)	933
BseAI	TCCGGA	1 cut(s)	231
BseBI	CCWGG	2 cut(s)	1790, 2046
BseDI	CCNNGG	6 cut(s)	174, 311, 1293, 1573, 1788, 2147
BseGI	GGATG	5 cut(s)	766, 928, 1303, 1345, 2006
BseLI	CCNNNNNNNGG	3 cut(s)	1117, 1243, 1609
BseMI	GCAATG	1 cut(s)	933
BseMII	CTCAG	2 cut(s)	546, 2072
BseNI	ACTGG	2 cut(s)	284, 294
BseRI	GAGGAG	2 cut(s)	250, 300
BseSI	GKGCMC	2 cut(s)	1512, 2208
BseXI	GCAGC	4 cut(s)	662, 850, 1418, 2139
BseYI	CCCAGC	1 cut(s)	2201
Bsh1236I	CGCG	1 cut(s)	149
Bsh1285I	CGRYCG	1 cut(s)	2018
BshFI	GGCC	4 cut(s)	482, 974, 1543, 2049
BshNI	GGYRCC	2 cut(s)	1032, 1509
BsiEI	CGRYCG	1 cut(s)	2018
BsiHKAI	GWGCWC	2 cut(s)	1309, 1557
BsiHKCI	CYCGRG	2 cut(s)	39, 267
BsiSI	CCGG	1 cut(s)	232
BslFI	GGGAC	4 cut(s)	49, 68, 277, 1500
BslI	CCNNNNNNNGG	3 cut(s)	1117, 1243, 1609
BsmAI	GTCTC	4 cut(s)	232, 884, 1200, 1651
BsmFI	GGGAC	4 cut(s)	49, 68, 277, 1500
BsmI	GAATGC	2 cut(s)	406, 2158
BsnI	GGCC	4 cut(s)	482, 974, 1543, 2049
BsoBI	CYCGRG	2 cut(s)	39, 267
Bsp1286I	GDGCHC	5 cut(s)	1219, 1309, 1512, 1557, 2208
Bsp13I	TCCGGA	1 cut(s)	231
Bsp143I	GATC	7 cut(s)	228, 768, 1162, 1182, 1452, 1605, 2171
Bsp19I	CCATGG	1 cut(s)	1573
BspACI	CCGC	3 cut(s)	149, 1540, 2103
BspANI	GGCC	4 cut(s)	482, 974, 1543, 2049
BspCNI	CTCAG	2 cut(s)	547, 2071
BspEI	TCCGGA	1 cut(s)	231
BspFNI	CGCG	1 cut(s)	149
BspHI	TCATGA	1 cut(s)	1311
BspLI	GGNNCC	4 cut(s)	1034, 1235, 1488, 1511
BspMAI	CTGCAG	1 cut(s)	677
BspMI	ACCTGC	2 cut(s)	666, 2170
BspPI	GGATC	3 cut(s)	223, 1190, 2166
BspQI	GCTCTTC	1 cut(s)	873
BspT107I	GGYRCC	2 cut(s)	1032, 1509
BsrDI	GCAATG	1 cut(s)	933
BsrI	ACTGG	2 cut(s)	284, 294
BssECI	CCNNGG	6 cut(s)	174, 311, 1293, 1573, 1788, 2147
BssMI	GATC	7 cut(s)	228, 768, 1162, 1182, 1452, 1605, 2171
BssT1I	CCWWGG	3 cut(s)	174, 1573, 2147
Bst2UI	CCWGG	2 cut(s)	1790, 2046
Bst4CI	ACNGT	6 cut(s)	139, 886, 1117, 1175, 1514, 1669
Bst6I	CTCTTC	4 cut(s)	873, 1712, 1874, 1955
BstAPI	GCANNNNNTGC	1 cut(s)	2162
BstC8I	GCNNGC	3 cut(s)	732, 1249, 1262
BstDEI	CTNAG	5 cut(s)	342, 418, 555, 1851, 2058
BstDSI	CCRYGG	1 cut(s)	1573
BstEII	GGTNACC	1 cut(s)	2230
BstF5I	GGATG	5 cut(s)	766, 928, 1303, 1345, 2006
BstFNI	CGCG	1 cut(s)	149
BstHHI	GCGC	2 cut(s)	594, 626
BstKTI	GATC	7 cut(s)	231, 771, 1165, 1185, 1455, 1608, 2174
BstMAI	GTCTC	4 cut(s)	232, 884, 1200, 1651
BstMBI	GATC	7 cut(s)	228, 768, 1162, 1182, 1452, 1605, 2171
BstMCI	CGRYCG	1 cut(s)	2018
BstMWI	GCNNNNNNNGC	5 cut(s)	650, 727, 1257, 2136, 2162
BstNI	CCWGG	2 cut(s)	1790, 2046
BstNSI	RCATGY	7 cut(s)	715, 734, 1630, 1663, 1876, 2067, 2223
BstPI	GGTNACC	1 cut(s)	2230
BstSCI	CCNGG	2 cut(s)	1788, 2044
BstSFI	CTRYAG	3 cut(s)	91, 673, 1481
BstSLI	GKGCMC	2 cut(s)	1512, 2208
BstUI	CGCG	1 cut(s)	149
BstV1I	GCAGC	4 cut(s)	662, 850, 1418, 2139
BstV2I	GAAGAC	3 cut(s)	117, 702, 999
BstX2I	RGATCY	1 cut(s)	2171
BstYI	RGATCY	1 cut(s)	2171
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	4 cut(s)	482, 974, 1543, 2049
BtgI	CCRYGG	1 cut(s)	1573
BtrI	CACGTC	2 cut(s)	115, 997
BtsCI	GGATG	5 cut(s)	766, 928, 1303, 1345, 2006
BtsIMutI	CAGTG	3 cut(s)	1584, 1674, 1706
BveI	ACCTGC	2 cut(s)	666, 2170
Cac8I	GCNNGC	3 cut(s)	732, 1249, 1262
CaiI	CAGNNNCTG	1 cut(s)	1179
CciI	TCATGA	1 cut(s)	1311
CfoI	GCGC	2 cut(s)	594, 626
Cfr13I	GGNCC	4 cut(s)	481, 562, 1487, 2042
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	8 cut(s)	225, 287, 306, 535, 953, 1495, 1867, 2217
CspCI	CAANNNNNGTGG	2 cut(s)	586, 621
CviQI	GTAC	8 cut(s)	225, 287, 306, 535, 953, 1495, 1867, 2217
DdeI	CTNAG	5 cut(s)	342, 418, 555, 1851, 2058
DpnI	GATC	7 cut(s)	230, 770, 1164, 1184, 1454, 1607, 2173
DpnII	GATC	7 cut(s)	228, 768, 1162, 1182, 1452, 1605, 2171
EaeI	YGGCCR	1 cut(s)	2047
Eam1104I	CTCTTC	4 cut(s)	873, 1712, 1874, 1955
EarI	CTCTTC	4 cut(s)	873, 1712, 1874, 1955
Eco130I	CCWWGG	3 cut(s)	174, 1573, 2147
Eco24I	GRGCYC	1 cut(s)	1219
Eco47I	GGWCC	3 cut(s)	562, 1487, 2042
Eco57I	CTGAAG	2 cut(s)	240, 1898
Eco88I	CYCGRG	2 cut(s)	39, 267
Eco91I	GGTNACC	1 cut(s)	2230
EcoO109I	RGGNCCY	2 cut(s)	562, 2042
EcoO65I	GGTNACC	1 cut(s)	2230
EcoRII	CCWGG	2 cut(s)	1788, 2044
EcoT14I	CCWWGG	3 cut(s)	174, 1573, 2147
EcoT22I	ATGCAT	1 cut(s)	736
EcoT38I	GRGCYC	1 cut(s)	1219
ErhI	CCWWGG	3 cut(s)	174, 1573, 2147
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FaqI	GGGAC	4 cut(s)	49, 68, 277, 1500
Fnu4HI	GCNGC	6 cut(s)	651, 864, 1407, 1541, 2104, 2128
FokI	GGATG	5 cut(s)	773, 935, 1310, 1352, 1993
FriOI	GRGCYC	1 cut(s)	1219
Fsp4HI	GCNGC	6 cut(s)	651, 864, 1407, 1541, 2104, 2128
FspBI	CTAG	1 cut(s)	1737
GlaI	GCGC	2 cut(s)	593, 625
GluI	GCNGC	6 cut(s)	651, 864, 1407, 1541, 2104, 2128
GsaI	CCCAGC	1 cut(s)	2205
HaeIII	GGCC	4 cut(s)	482, 974, 1543, 2049
HapII	CCGG	1 cut(s)	232
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	2 cut(s)	594, 626
Hin6I	GCGC	2 cut(s)	592, 624
HinP1I	GCGC	2 cut(s)	592, 624
HindIII	AAGCTT	2 cut(s)	575, 1083
HinfI	GANTC	6 cut(s)	37, 265, 614, 1399, 1644, 1696
HpaII	CCGG	1 cut(s)	232
HphI	GGTGA	3 cut(s)	397, 1373, 2126
Hpy166II	GTNNAC	5 cut(s)	799, 1519, 1567, 1665, 1934
Hpy188I	TCNGA	8 cut(s)	315, 475, 515, 619, 1294, 1764, 1858, 2061
Hpy188III	TCNNGA	9 cut(s)	232, 401, 413, 1041, 1180, 1231, 1312, 1373, 1456
Hpy8I	GTNNAC	5 cut(s)	799, 1519, 1567, 1665, 1934
Hpy99I	CGWCG	1 cut(s)	1073
HpyCH4III	ACNGT	6 cut(s)	139, 886, 1117, 1175, 1514, 1669
HpyCH4IV	ACGT	3 cut(s)	114, 128, 996
HpyF10VI	GCNNNNNNNGC	5 cut(s)	650, 727, 1257, 2136, 2162
HpyF3I	CTNAG	5 cut(s)	342, 418, 555, 1851, 2058
HpySE526I	ACGT	3 cut(s)	114, 128, 996
HspAI	GCGC	2 cut(s)	592, 624
Kpn2I	TCCGGA	1 cut(s)	231
Kzo9I	GATC	7 cut(s)	228, 768, 1162, 1182, 1452, 1605, 2171
LguI	GCTCTTC	1 cut(s)	873
LmnI	GCTCC	2 cut(s)	374, 1120
Lsp1109I	GCAGC	4 cut(s)	662, 850, 1418, 2139
LweI	GCATC	6 cut(s)	463, 913, 930, 990, 1024, 2180
MaeI	CTAG	1 cut(s)	1737
MaeII	ACGT	3 cut(s)	114, 128, 996
MaeIII	GTNAC	7 cut(s)	124, 611, 752, 1622, 1655, 1704, 2230
MalI	GATC	7 cut(s)	230, 770, 1164, 1184, 1454, 1607, 2173
MboI	GATC	7 cut(s)	228, 768, 1162, 1182, 1452, 1605, 2171
MfeI	CAATTG	1 cut(s)	987
MflI	RGATCY	1 cut(s)	2171
MhlI	GDGCHC	5 cut(s)	1219, 1309, 1512, 1557, 2208
MlsI	TGGCCA	1 cut(s)	2049
MluCI	AATT	7 cut(s)	318, 331, 355, 987, 1057, 1106, 1157
MluNI	TGGCCA	1 cut(s)	2049
MlyI	GAGTC	4 cut(s)	31, 259, 608, 1653
MmeI	TCCRAC	1 cut(s)	1836
Mox20I	TGGCCA	1 cut(s)	2049
Mph1103I	ATGCAT	1 cut(s)	736
MroI	TCCGGA	1 cut(s)	231
MroXI	GAANNNNTTC	1 cut(s)	1938
MscI	TGGCCA	1 cut(s)	2049
MseI	TTAA	5 cut(s)	132, 354, 1089, 1347, 1434
MslI	CAYNNNNRTG	3 cut(s)	459, 528, 542
Msp20I	TGGCCA	1 cut(s)	2049
MspI	CCGG	1 cut(s)	232
MspR9I	CCNGG	2 cut(s)	1790, 2046
MunI	CAATTG	1 cut(s)	987
Mva1269I	GAATGC	2 cut(s)	406, 2158
MvaI	CCWGG	2 cut(s)	1790, 2046
MvnI	CGCG	1 cut(s)	149
MwoI	GCNNNNNNNGC	5 cut(s)	650, 727, 1257, 2136, 2162
NcoI	CCATGG	1 cut(s)	1573
NdeII	GATC	7 cut(s)	228, 768, 1162, 1182, 1452, 1605, 2171
NlaIV	GGNNCC	4 cut(s)	1034, 1235, 1488, 1511
NmuCI	GTSAC	4 cut(s)	124, 611, 1655, 1704
NsiI	ATGCAT	1 cut(s)	736
NspI	RCATGY	7 cut(s)	715, 734, 1630, 1663, 1876, 2067, 2223
PaeI	GCATGC	1 cut(s)	734
PaeR7I	CTCGAG	2 cut(s)	39, 267
PagI	TCATGA	1 cut(s)	1311
PaqCI	CACCTGC	1 cut(s)	2170
PciI	ACATGT	5 cut(s)	711, 1626, 1659, 2063, 2219
PciSI	GCTCTTC	1 cut(s)	873
PcsI	WCGNNNNNNNCGW	1 cut(s)	454
PctI	GAATGC	2 cut(s)	406, 2158
PdmI	GAANNNNTTC	1 cut(s)	1938
PfeI	GAWTC	2 cut(s)	1399, 1696
PflMI	CCANNNNNTGG	2 cut(s)	1117, 1243
PkrI	GCNGC	6 cut(s)	652, 865, 1408, 1542, 2105, 2129
PleI	GAGTC	4 cut(s)	31, 259, 608, 1652
PpsI	GAGTC	4 cut(s)	31, 259, 608, 1652
PpuMI	RGGWCCY	2 cut(s)	562, 2042
PscI	ACATGT	5 cut(s)	711, 1626, 1659, 2063, 2219
Psp5II	RGGWCCY	2 cut(s)	562, 2042
Psp6I	CCWGG	2 cut(s)	1788, 2044
PspEI	GGTNACC	1 cut(s)	2230
PspFI	CCCAGC	1 cut(s)	2201
PspGI	CCWGG	2 cut(s)	1788, 2044
PspN4I	GGNNCC	4 cut(s)	1034, 1235, 1488, 1511
PspPI	GGNCC	4 cut(s)	481, 562, 1487, 2042
PspPPI	RGGWCCY	2 cut(s)	562, 2042
PspXI	VCTCGAGB	2 cut(s)	39, 267
PstI	CTGCAG	1 cut(s)	677
PstNI	CAGNNNCTG	1 cut(s)	1179
PsuI	RGATCY	1 cut(s)	2171
RsaI	GTAC	8 cut(s)	226, 288, 307, 536, 954, 1496, 1868, 2218
RsaNI	GTAC	8 cut(s)	225, 287, 306, 535, 953, 1495, 1867, 2217
RseI	CAYNNNNRTG	3 cut(s)	459, 528, 542
SapI	GCTCTTC	1 cut(s)	873
SaqAI	TTAA	5 cut(s)	132, 354, 1089, 1347, 1434
SatI	GCNGC	6 cut(s)	651, 864, 1407, 1541, 2104, 2128
Sau3AI	GATC	7 cut(s)	228, 768, 1162, 1182, 1452, 1605, 2171
Sau96I	GGNCC	4 cut(s)	481, 562, 1487, 2042
ScaI	AGTACT	1 cut(s)	1496
SchI	GAGTC	4 cut(s)	31, 259, 608, 1653
ScrFI	CCNGG	2 cut(s)	1790, 2046
SduI	GDGCHC	5 cut(s)	1219, 1309, 1512, 1557, 2208
SfaNI	GCATC	6 cut(s)	463, 913, 930, 990, 1024, 2180
SfcI	CTRYAG	3 cut(s)	91, 673, 1481
Sfr274I	CTCGAG	2 cut(s)	39, 267
SinI	GGWCC	3 cut(s)	562, 1487, 2042
SlaI	CTCGAG	2 cut(s)	39, 267
SmiMI	CAYNNNNRTG	3 cut(s)	459, 528, 542
SmlI	CTYRAG	3 cut(s)	39, 267, 1218
SmoI	CTYRAG	3 cut(s)	39, 267, 1218
SphI	GCATGC	1 cut(s)	734
Sse9I	AATT	7 cut(s)	318, 331, 355, 987, 1057, 1106, 1157
SsiI	CCGC	3 cut(s)	149, 1540, 2103
SspMI	CTAG	1 cut(s)	1737
StyD4I	CCNGG	2 cut(s)	1788, 2044
StyI	CCWWGG	3 cut(s)	174, 1573, 2147
TaaI	ACNGT	6 cut(s)	139, 886, 1117, 1175, 1514, 1669
TaiI	ACGT	3 cut(s)	117, 131, 999
TaqI	TCGA	7 cut(s)	40, 268, 457, 876, 1161, 1374, 1727
TaqII	GACCGA	1 cut(s)	2032
TasI	AATT	7 cut(s)	318, 331, 355, 987, 1057, 1106, 1157
TatI	WGTACW	3 cut(s)	534, 952, 1494
TauI	GCSGC	2 cut(s)	1543, 2106
TfiI	GAWTC	2 cut(s)	1399, 1696
Tru1I	TTAA	5 cut(s)	132, 354, 1089, 1347, 1434
Tru9I	TTAA	5 cut(s)	132, 354, 1089, 1347, 1434
TscAI	CASTG	3 cut(s)	1591, 1674, 1713
TseFI	GTSAC	4 cut(s)	124, 611, 1655, 1704
TseI	GCWGC	4 cut(s)	650, 863, 1406, 2127
Tsp45I	GTSAC	4 cut(s)	124, 611, 1655, 1704
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	3 cut(s)	1591, 1674, 1713
Van91I	CCANNNNNTGG	2 cut(s)	1117, 1243
VpaK11BI	GGWCC	3 cut(s)	562, 1487, 2042
XapI	RAATTY	2 cut(s)	1106, 1157
XceI	RCATGY	7 cut(s)	715, 734, 1630, 1663, 1876, 2067, 2223
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1244, 1786
XhoI	CTCGAG	2 cut(s)	39, 267
XmnI	GAANNNNTTC	1 cut(s)	1938
XspI	CTAG	1 cut(s)	1737
ZrmI	AGTACT	1 cut(s)	1496
Zsp2I	ATGCAT	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.