Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Reverse (-)

14482738 .. 14485427

Gene Structure 2690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g16601.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGTGAATAGGGATGGCAATAATCCCCAGCGGGTAGGCGGCTTCGGAGGGGATGGGTACTTCGAGGTTAAGCATGTTGATGCTAGAGCATTCCCAGGATGGGTGACCTACTGGGAAGCTGCTCTTGAGCTGCCGGAAACAAAACCGGGTGGAGTGTCGGAGTGTCTGACACGCCCGACACGGCAACACGCGCCCAACACGTGTCTGACACGCCAAGTGGCATCAGAAACTGTTGACATTTCCGACACGGCCCGACACGTTGACCGACACGCCAGAAGAACAAAAGAGGATCCTCGCATCAAGATCCTCTTCTCAGCCTCTAAGAACGACAAGCCTCTTCCTCGTGTGTGTCGCGCGTCAAGGTCCTCTTTGTCGACGACCTCTCCGCCGATAGCCGCAACAGTTATCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.12

Weight (kDa)

9.6

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	374
AccII	CGCG	3 cut(s)	191, 354, 356
AciI	CCGC	4 cut(s)	31, 39, 386, 396
AclWI	GGATC	3 cut(s)	284, 297, 298
AcvI	CACGTG	1 cut(s)	201
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	100
AflIII	ACRYGT	3 cut(s)	198, 200, 256
AjnI	CCWGG	1 cut(s)	94
AluBI	AGCT	2 cut(s)	119, 130
AluI	AGCT	2 cut(s)	119, 130
AlwI	GGATC	3 cut(s)	284, 297, 298
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	249
ApeKI	GCWGC	2 cut(s)	119, 130
AspLEI	GCGC	2 cut(s)	193, 356
AspS9I	GGNCC	2 cut(s)	250, 363
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	2 cut(s)	16, 115
AvaII	GGWCC	1 cut(s)	363
BamHI	GGATCC	1 cut(s)	289
BauI	CACGAG	1 cut(s)	342
BbrPI	CACGTG	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	106, 117
BccI	CCATC	3 cut(s)	8, 47, 93
BceAI	ACGGC	2 cut(s)	197, 264
BciT130I	CCWGG	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	147
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	4 cut(s)	40, 120, 131, 396
BlsI	GCNGC	4 cut(s)	41, 121, 132, 397
Bme1390I	CCNGG	2 cut(s)	96, 147
Bme18I	GGWCC	1 cut(s)	363
BmgT120I	GGNCC	2 cut(s)	250, 363
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	2 cut(s)	96, 147
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	3 cut(s)	70, 230, 306
BmuI	ACTGGG	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	147
BsaAI	YACGTR	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	116
BseBI	CCWGG	1 cut(s)	96
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	3 cut(s)	19, 58, 104
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	1 cut(s)	116
BseXI	GCAGC	2 cut(s)	106, 117
BseYI	CCCAGC	1 cut(s)	27
Bsh1236I	CGCG	3 cut(s)	191, 354, 356
BshFI	GGCC	1 cut(s)	251
BsiSI	CCGG	2 cut(s)	134, 146
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	251
Bsp143I	GATC	2 cut(s)	289, 303
BspACI	CCGC	4 cut(s)	31, 39, 386, 396
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	1 cut(s)	326
BspFNI	CGCG	3 cut(s)	191, 354, 356
BspLI	GGNNCC	1 cut(s)	291
BspPI	GGATC	3 cut(s)	284, 297, 298
BsrI	ACTGG	1 cut(s)	116
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	2 cut(s)	289, 303
BssSI	CACGAG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	96
Bst4CI	ACNGT	2 cut(s)	232, 403
Bst6I	CTCTTC	2 cut(s)	314, 342
BstBAI	YACGTR	1 cut(s)	201
BstDEI	CTNAG	2 cut(s)	313, 321
BstEII	GGTNACC	1 cut(s)	103
BstF5I	GGATG	3 cut(s)	19, 58, 104
BstFNI	CGCG	3 cut(s)	191, 354, 356
BstHHI	GCGC	2 cut(s)	193, 356
BstKTI	GATC	2 cut(s)	292, 306
BstMBI	GATC	2 cut(s)	289, 303
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNI	CCWGG	1 cut(s)	96
BstNSI	RCATGY	1 cut(s)	77
BstPI	GGTNACC	1 cut(s)	103
BstSCI	CCNGG	2 cut(s)	94, 145
BstUI	CGCG	3 cut(s)	191, 354, 356
BstV1I	GCAGC	2 cut(s)	106, 117
BstX2I	RGATCY	2 cut(s)	289, 303
BstYI	RGATCY	2 cut(s)	289, 303
BsuRI	GGCC	1 cut(s)	251
BtsCI	GGATG	3 cut(s)	19, 58, 104
CaiI	CAGNNNCTG	1 cut(s)	230
CfoI	GCGC	2 cut(s)	193, 356
Cfr13I	GGNCC	2 cut(s)	250, 363
CseI	GACGC	1 cut(s)	345
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	7 cut(s)	42, 119, 130, 251, 317, 334, 395
CviKI_1	RGCY	7 cut(s)	42, 119, 130, 251, 317, 334, 395
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	2 cut(s)	313, 321
DpnI	GATC	2 cut(s)	291, 305
DpnII	GATC	2 cut(s)	289, 303
Eam1104I	CTCTTC	2 cut(s)	314, 342
EarI	CTCTTC	2 cut(s)	314, 342
EciI	GGCGGA	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	363
Eco72I	CACGTG	1 cut(s)	201
Eco91I	GGTNACC	1 cut(s)	103
EcoO109I	RGGNCCY	1 cut(s)	363
EcoO65I	GGTNACC	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	94
FaeI	CATG	1 cut(s)	77
FaiI	YATR	1 cut(s)	75
FalI	AAGNNNNNCTT	6 cut(s)	108, 140, 293, 325, 352, 384
FatI	CATG	1 cut(s)	73
FauI	CCCGC	1 cut(s)	24
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	4 cut(s)	40, 120, 131, 396
FokI	GGATG	3 cut(s)	26, 65, 111
Fsp4HI	GCNGC	4 cut(s)	40, 120, 131, 396
FspBI	CTAG	1 cut(s)	84
GlaI	GCGC	2 cut(s)	192, 355
GluI	GCNGC	4 cut(s)	40, 120, 131, 396
GsaI	CCCAGC	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	2 cut(s)	134, 146
HgaI	GACGC	1 cut(s)	345
HhaI	GCGC	2 cut(s)	193, 356
Hin1II	CATG	1 cut(s)	77
Hin6I	GCGC	2 cut(s)	191, 354
HinP1I	GCGC	2 cut(s)	191, 354
HincII	GTYRAC	3 cut(s)	235, 262, 375
HindII	GTYRAC	3 cut(s)	235, 262, 375
HpaII	CCGG	2 cut(s)	134, 146
HphI	GGTGA	2 cut(s)	16, 115
Hpy166II	GTNNAC	3 cut(s)	235, 262, 375
Hpy188I	TCNGA	6 cut(s)	47, 160, 168, 207, 226, 244
Hpy188III	TCNNGA	2 cut(s)	125, 301
Hpy8I	GTNNAC	3 cut(s)	235, 262, 375
Hpy99I	CGWCG	1 cut(s)	379
HpyCH4III	ACNGT	2 cut(s)	232, 403
HpyCH4IV	ACGT	2 cut(s)	200, 258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	2 cut(s)	313, 321
HpySE526I	ACGT	2 cut(s)	200, 258
Hsp92II	CATG	1 cut(s)	77
HspAI	GCGC	2 cut(s)	191, 354
Kzo9I	GATC	2 cut(s)	289, 303
LpnPI	CCDG	7 cut(s)	41, 81, 97, 108, 147, 159, 286
Lsp1109I	GCAGC	2 cut(s)	106, 117
LweI	GCATC	3 cut(s)	70, 230, 306
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	2 cut(s)	200, 258
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	2 cut(s)	291, 305
MboI	GATC	2 cut(s)	289, 303
MboII	GAAGA	3 cut(s)	288, 301, 329
MflI	RGATCY	2 cut(s)	289, 303
MmeI	TCCRAC	2 cut(s)	138, 267
MseI	TTAA	1 cut(s)	69
MslI	CAYNNNNRTG	1 cut(s)	78
MspA1I	CMGCKG	1 cut(s)	31
MspI	CCGG	2 cut(s)	134, 146
MspR9I	CCNGG	2 cut(s)	96, 147
Mva1269I	GAATGC	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	96
MvnI	CGCG	3 cut(s)	191, 354, 356
MwoI	GCNNNNNNNGC	1 cut(s)	190
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	2 cut(s)	289, 303
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	1 cut(s)	291
NmuCI	GTSAC	1 cut(s)	103
NspI	RCATGY	1 cut(s)	77
PctI	GAATGC	1 cut(s)	89
PkrI	GCNGC	4 cut(s)	41, 121, 132, 397
PmaCI	CACGTG	1 cut(s)	201
PmlI	CACGTG	1 cut(s)	201
Ppu21I	YACGTR	1 cut(s)	201
PpuMI	RGGWCCY	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	94
PspCI	CACGTG	1 cut(s)	201
PspEI	GGTNACC	1 cut(s)	103
PspFI	CCCAGC	1 cut(s)	27
PspGI	CCWGG	1 cut(s)	94
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	2 cut(s)	250, 363
PspPPI	RGGWCCY	1 cut(s)	363
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	2 cut(s)	289, 303
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	78
SalI	GTCGAC	1 cut(s)	373
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	4 cut(s)	40, 120, 131, 396
Sau3AI	GATC	2 cut(s)	289, 303
Sau96I	GGNCC	2 cut(s)	250, 363
ScrFI	CCNGG	2 cut(s)	96, 147
SetI	ASST	8 cut(s)	69, 110, 121, 132, 203, 261, 365, 383
SfaNI	GCATC	3 cut(s)	70, 230, 306
SinI	GGWCC	1 cut(s)	363
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SsiI	CCGC	4 cut(s)	31, 39, 386, 396
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	94, 145
TaaI	ACNGT	2 cut(s)	232, 403
TaiI	ACGT	2 cut(s)	203, 261
TaqI	TCGA	2 cut(s)	63, 374
TaqII	GACCGA	1 cut(s)	279
TauI	GCSGC	2 cut(s)	42, 398
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	2 cut(s)	119, 130
Tsp45I	GTSAC	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	363
XceI	RCATGY	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	374
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.