Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Reverse (-)

43428113 .. 43431227

Gene Structure 3115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00317870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAACTCGGGATCGAAGAAGCCTAGTCTCGATATTTCGGGTAGCCTTATGGTCTCCGCATTGGATGAAAAGCATAAGCATATCTCTGATGAATATGAGAAGGAAGACGACTCAAAGCCAATACATGCGCACACATGTTCTGCTGTTGAAGAAGGATTTTGCATCCATATCACCGATGTCACTAAAAGACCATGCGGCACATGCGCACACCTGTACAACGTCGGTCCAGACAACAAAAAGAGATGCAGTTGTATCTTATGCCACCGGGAAGAGGAACAAGATGGGAATGCCAATTCACCTCCCTCAAGTTATTGGTGGTGGCCTAGTGACTCTGAATTCTCTCGGATATTGATGATTTTCACCAAGCAAGTGTTCGTGGATGTGACCGTAGTCTCCTTAGATTCTTGCCGCCCCTACGGCCGCGCCGCAAGTGCAAGGGTCGCCACGGACAGTGCGCAAGGACCATACGAAGCTAATGGAAGAAGTTTGGTGAAGATTGATGGCCGGAGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

19.05

Weight (kDa)

6.37

Isoelectric Point (pI)

57.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	3 cut(s)	129, 205, 456
AccII	CGCG	1 cut(s)	423
AciI	CCGC	5 cut(s)	57, 195, 409, 421, 426
AclWI	GGATC	1 cut(s)	19
AcoI	YGGCCR	2 cut(s)	418, 502
AcsI	RAATTY	1 cut(s)	335
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflIII	ACRYGT	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	149
AjuI	GAANNNNNNNTTGG	2 cut(s)	356, 388
AluBI	AGCT	1 cut(s)	473
AluI	AGCT	1 cut(s)	473
Alw26I	GTCTC	3 cut(s)	32, 58, 397
AlwI	GGATC	1 cut(s)	19
Ama87I	CYCGRG	1 cut(s)	7
AoxI	GGCC	3 cut(s)	320, 418, 502
ApoI	RAATTY	1 cut(s)	335
AspLEI	GCGC	4 cut(s)	130, 206, 425, 457
AspS9I	GGNCC	2 cut(s)	224, 461
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	4 cut(s)	163, 288, 352, 502
AvaI	CYCGRG	1 cut(s)	7
AvaII	GGWCC	2 cut(s)	224, 461
BbsI	GAAGAC	1 cut(s)	111
BccI	CCATC	2 cut(s)	275, 494
BceAI	ACGGC	1 cut(s)	433
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	3 cut(s)	32, 58, 397
BfaI	CTAG	2 cut(s)	24, 324
BglI	GCCNNNNNGGC	1 cut(s)	417
BisI	GCNGC	4 cut(s)	196, 409, 421, 426
BlsI	GCNGC	4 cut(s)	197, 410, 422, 427
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	2 cut(s)	224, 461
BmeT110I	CYCGRG	1 cut(s)	7
BmgT120I	GGNCC	2 cut(s)	224, 461
BmrFI	CCNGG	1 cut(s)	266
BmsI	GCATC	2 cut(s)	171, 233
BoxI	GACNNNNGTC	1 cut(s)	389
BpiI	GAAGAC	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	289
BpuMI	CCSGG	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
BseDI	CCNNGG	1 cut(s)	444
BseGI	GGATG	3 cut(s)	70, 162, 385
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseX3I	CGGCCG	1 cut(s)	418
Bsh1236I	CGCG	1 cut(s)	423
Bsh1285I	CGRYCG	1 cut(s)	421
BshFI	GGCC	3 cut(s)	322, 420, 504
BsiEI	CGRYCG	1 cut(s)	421
BsiHKCI	CYCGRG	1 cut(s)	7
BsiSI	CCGG	2 cut(s)	265, 505
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	3 cut(s)	32, 58, 397
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	3 cut(s)	322, 420, 504
Bso31I	GGTCTC	1 cut(s)	58
BsoBI	CYCGRG	1 cut(s)	7
Bsp1407I	TGTACA	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	11
BspACI	CCGC	5 cut(s)	57, 195, 409, 421, 426
BspANI	GGCC	3 cut(s)	322, 420, 504
BspFNI	CGCG	1 cut(s)	423
BspPI	GGATC	1 cut(s)	19
BspTNI	GGTCTC	1 cut(s)	58
BsrGI	TGTACA	1 cut(s)	213
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	1 cut(s)	11
Bst4CI	ACNGT	2 cut(s)	388, 452
Bst6I	CTCTTC	1 cut(s)	264
BstAUI	TGTACA	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	397
BstDSI	CCRYGG	1 cut(s)	444
BstF5I	GGATG	3 cut(s)	70, 162, 385
BstFNI	CGCG	1 cut(s)	423
BstHHI	GCGC	4 cut(s)	130, 206, 425, 457
BstKTI	GATC	1 cut(s)	14
BstMAI	GTCTC	3 cut(s)	32, 58, 397
BstMBI	GATC	1 cut(s)	11
BstMCI	CGRYCG	1 cut(s)	421
BstMWI	GCNNNNNNNGC	4 cut(s)	201, 417, 431, 440
BstNSI	RCATGY	3 cut(s)	128, 138, 204
BstPAI	GACNNNNGTC	1 cut(s)	389
BstSCI	CCNGG	1 cut(s)	264
BstUI	CGCG	1 cut(s)	423
BstV2I	GAAGAC	1 cut(s)	111
BstZI	CGGCCG	1 cut(s)	418
BsuRI	GGCC	3 cut(s)	322, 420, 504
BtgI	CCRYGG	1 cut(s)	444
BtsCI	GGATG	3 cut(s)	70, 162, 385
BtsIMutI	CAGTG	1 cut(s)	457
CfoI	GCGC	4 cut(s)	130, 206, 425, 457
Cfr13I	GGNCC	2 cut(s)	224, 461
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	4 cut(s)	125, 135, 192, 201
CviJI	RGCY	7 cut(s)	22, 45, 118, 322, 420, 473, 504
CviKI_1	RGCY	7 cut(s)	22, 45, 118, 322, 420, 473, 504
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	397
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
EaeI	YGGCCR	2 cut(s)	418, 502
EagI	CGGCCG	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
EclXI	CGGCCG	1 cut(s)	418
Eco31I	GGTCTC	1 cut(s)	58
Eco47I	GGWCC	2 cut(s)	224, 461
Eco52I	CGGCCG	1 cut(s)	418
Eco88I	CYCGRG	1 cut(s)	7
EcoRI	GAATTC	1 cut(s)	335
FaeI	CATG	4 cut(s)	128, 138, 195, 204
FatI	CATG	4 cut(s)	124, 134, 191, 200
Fnu4HI	GCNGC	4 cut(s)	196, 409, 421, 426
FokI	GGATG	3 cut(s)	77, 149, 392
Fsp4HI	GCNGC	4 cut(s)	196, 409, 421, 426
FspAI	RTGCGCAY	2 cut(s)	129, 205
FspBI	CTAG	2 cut(s)	24, 324
FspI	TGCGCA	3 cut(s)	129, 205, 456
GlaI	GCGC	4 cut(s)	129, 205, 424, 456
GluI	GCNGC	4 cut(s)	196, 409, 421, 426
HaeIII	GGCC	3 cut(s)	322, 420, 504
HapII	CCGG	2 cut(s)	265, 505
HhaI	GCGC	4 cut(s)	130, 206, 425, 457
Hin1II	CATG	4 cut(s)	128, 138, 195, 204
Hin6I	GCGC	4 cut(s)	128, 204, 423, 455
HinP1I	GCGC	4 cut(s)	128, 204, 423, 455
HinfI	GANTC	3 cut(s)	110, 329, 401
HpaII	CCGG	2 cut(s)	265, 505
HphI	GGTGA	4 cut(s)	163, 288, 352, 502
Hpy188I	TCNGA	3 cut(s)	88, 334, 345
Hpy188III	TCNNGA	3 cut(s)	9, 29, 227
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	2 cut(s)	94, 146
HpyCH4III	ACNGT	2 cut(s)	388, 452
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	3 cut(s)	162, 246, 434
HpyF10VI	GCNNNNNNNGC	4 cut(s)	201, 417, 431, 440
HpyF3I	CTNAG	1 cut(s)	397
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	4 cut(s)	128, 138, 195, 204
HspAI	GCGC	4 cut(s)	128, 204, 423, 455
Kzo9I	GATC	1 cut(s)	11
LpnPI	CCDG	3 cut(s)	224, 240, 278
LweI	GCATC	2 cut(s)	171, 233
MaeI	CTAG	2 cut(s)	24, 324
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	3 cut(s)	178, 326, 382
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MboII	GAAGA	6 cut(s)	28, 116, 161, 281, 492, 505
MluCI	AATT	2 cut(s)	292, 335
MlyI	GAGTC	2 cut(s)	104, 323
MnlI	CCTC	5 cut(s)	265, 309, 313, 501, 504
MspI	CCGG	2 cut(s)	265, 505
MspR9I	CCNGG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	292
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	4 cut(s)	201, 417, 431, 440
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	1 cut(s)	11
NlaIII	CATG	4 cut(s)	128, 138, 195, 204
NmuCI	GTSAC	3 cut(s)	178, 326, 382
NsbI	TGCGCA	3 cut(s)	129, 205, 456
NspI	RCATGY	3 cut(s)	128, 138, 204
PciI	ACATGT	1 cut(s)	134
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	401
PkrI	GCNGC	4 cut(s)	197, 410, 422, 427
PleI	GAGTC	2 cut(s)	104, 323
PpsI	GAGTC	2 cut(s)	104, 323
PscI	ACATGT	1 cut(s)	134
PshAI	GACNNNNGTC	1 cut(s)	389
PspPI	GGNCC	2 cut(s)	224, 461
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SatI	GCNGC	4 cut(s)	196, 409, 421, 426
Sau3AI	GATC	1 cut(s)	11
Sau96I	GGNCC	2 cut(s)	224, 461
SchI	GAGTC	2 cut(s)	104, 323
ScrFI	CCNGG	1 cut(s)	266
SetI	ASST	5 cut(s)	213, 222, 301, 475, 515
SfaNI	GCATC	2 cut(s)	171, 233
SinI	GGWCC	2 cut(s)	224, 461
SmlI	CTYRAG	1 cut(s)	304
SmoI	CTYRAG	1 cut(s)	304
Sse9I	AATT	2 cut(s)	292, 335
SsiI	CCGC	5 cut(s)	57, 195, 409, 421, 426
SspMI	CTAG	2 cut(s)	24, 324
StyD4I	CCNGG	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	388, 452
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	14, 30
TaqII	GACCGA	1 cut(s)	212
TasI	AATT	2 cut(s)	292, 335
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	4 cut(s)	198, 411, 423, 428
TfiI	GAWTC	1 cut(s)	401
TscAI	CASTG	1 cut(s)	457
TseFI	GTSAC	3 cut(s)	178, 326, 382
Tsp45I	GTSAC	3 cut(s)	178, 326, 382
TspDTI	ATGAA	3 cut(s)	17, 81, 105
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	1 cut(s)	457
VpaK11BI	GGWCC	2 cut(s)	224, 461
XapI	RAATTY	1 cut(s)	335
XceI	RCATGY	3 cut(s)	128, 138, 204
XspI	CTAG	2 cut(s)	24, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.