Rw6G012040

translation initiation factor activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000607
Physical Location & Seq
Forward (+)
21787135 .. 21788435
1301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G012040.1

Sequence Viewer

Length: 828 bp
ATGGTTGGCATGAGAAGCACGCAGAGGTGTGAGGGCATGAATAGGTTCATCAAAGACTCTATTGGGAGCGGCATGAAACTAGTCGAAGTAATGAGAAACAATCAAGTAAGGGATGACTTTAACACTATGAACTCAACCCCTGTTCTCGAAACTCACCTAAAAGACTTGAGAATCATGCAGCTTCTATATACACATACGATGTGTTTAAAGTACTTTGAAGATGGGCACCTTGTTTACACAATGTCAGCTTACAAGCGGCCTAATTTTGAGCACAAGGTAGTTTACTACCATGGGAAAAACACTGAAAGTGCAACAGACCCGATCATGGTATGTTCTTGTAACATGTTTCAGTATAGGGGAGTCCTATGTCGTCACATGTTCACAGTGATGAAACACGAACACATCAATGAGATTCCAAAGTCACTGATTGTGAAGAGATGGTCGAAGTCTGCTAGAGATGTTAGGTATAGTGCTATGAATGTTGATTGCAACCGAATGTGTTTTTATGCTTCCAAGTCGGAAGCAGGGTACAACATGTTGAAGAGAGAGATAAATAGATTGACAACAATAATGGAAGGGTTGTTGAGAGACTTTGAACAGGTTCAAAGTATAGCTACACCGAAGAGTAAAGGTTGTGTTTTAAGAGATCCTATCACCGCTAAGACCAAAGGCAGAGAAGTCAAAAGTGACAAAAAGTATGAGCCATCCAAACGACCGATTACTTGTAGTTATTGCAAAGGTCCTGGCCACAATACTCAGGCATGTGAAGATAGGAAGTTTTTTTTTTGCTCTTGTGCAATAGCATTTCAAACAATGGTTGATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05160 map03013 map05160
Pfam Domains
Protein Families
PCI

Protein Analysis

275

Amino Acids

31.96

Weight (kDa)

9.27

Isoelectric Point (pI)

30.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 225
AccBSI CCGCTC 1 cut(s) 69
AciI CCGC 3 cut(s) 69, 256, 657
AclWI GGATC 1 cut(s) 641
AcoI YGGCCR 1 cut(s) 745
AfaI GTAC 2 cut(s) 212, 530
AfiI CCNNNNNNNGG 1 cut(s) 325
AflIII ACRYGT 3 cut(s) 342, 375, 534
AgsI TTSAA 5 cut(s) 218, 541, 596, 605, 809
AhlI ACTAGT 1 cut(s) 79
AjnI CCWGG 1 cut(s) 742
AluBI AGCT 3 cut(s) 181, 248, 614
AluI AGCT 3 cut(s) 181, 248, 614
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 582
AlwI GGATC 1 cut(s) 641
AoxI GGCC 2 cut(s) 257, 745
ApeKI GCWGC 1 cut(s) 178
Asp700I GAANNNNTTC 2 cut(s) 44, 600
AspS9I GGNCC 1 cut(s) 740
AsuHPI GGTGA 2 cut(s) 146, 646
AvaII GGWCC 1 cut(s) 740
BaeGI GKGCMC 1 cut(s) 228
BalI TGGCCA 1 cut(s) 747
BanI GGYRCC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 190
BccI CCATC 3 cut(s) 215, 432, 712
BciT130I CCWGG 1 cut(s) 744
BcoDI GTCTC 1 cut(s) 582
BcuI ACTAGT 1 cut(s) 79
BfaI CTAG 2 cut(s) 80, 453
BisI GCNGC 3 cut(s) 70, 179, 257
BlsI GCNGC 3 cut(s) 71, 180, 258
BmcAI AGTACT 1 cut(s) 212
Bme1390I CCNGG 1 cut(s) 744
Bme18I GGWCC 1 cut(s) 740
BmgT120I GGNCC 1 cut(s) 740
BmiI GGNNCC 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 744
BpuEI CTTGAG 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 1 cut(s) 325
BseBI CCWGG 1 cut(s) 744
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 2 cut(s) 118, 704
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMII CTCAG 1 cut(s) 770
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 1 cut(s) 190
Bsh1285I CGRYCG 1 cut(s) 716
BshFI GGCC 2 cut(s) 259, 747
BshNI GGYRCC 1 cut(s) 225
BsiEI CGRYCG 1 cut(s) 716
BsiHKAI GWGCWC 1 cut(s) 273
BslI CCNNNNNNNGG 1 cut(s) 325
BsmAI GTCTC 1 cut(s) 582
BsnI GGCC 2 cut(s) 259, 747
Bsp1286I GDGCHC 2 cut(s) 228, 273
Bsp143I GATC 2 cut(s) 321, 646
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 3 cut(s) 69, 256, 657
BspANI GGCC 2 cut(s) 259, 747
BspCNI CTCAG 1 cut(s) 769
BspLI GGNNCC 1 cut(s) 227
BspPI GGATC 1 cut(s) 641
BspT107I GGYRCC 1 cut(s) 225
BsrBI CCGCTC 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 2 cut(s) 321, 646
BssT1I CCWWGG 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 744
Bst4CI ACNGT 1 cut(s) 385
Bst6I CTCTTC 3 cut(s) 428, 536, 617
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 2 cut(s) 660, 756
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 2 cut(s) 118, 704
BstKTI GATC 2 cut(s) 324, 649
BstMAI GTCTC 1 cut(s) 582
BstMBI GATC 2 cut(s) 321, 646
BstMCI CGRYCG 1 cut(s) 716
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstNI CCWGG 1 cut(s) 744
BstNSI RCATGY 4 cut(s) 346, 379, 538, 765
BstSCI CCNGG 1 cut(s) 742
BstSLI GKGCMC 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 646
BstYI RGATCY 1 cut(s) 646
BsuRI GGCC 2 cut(s) 259, 747
BtgI CCRYGG 1 cut(s) 289
BtsCI GGATG 2 cut(s) 118, 704
BtsIMutI CAGTG 3 cut(s) 300, 390, 422
Cac8I GCNNGC 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 740
Csp6I GTAC 2 cut(s) 211, 529
CviJI RGCY 6 cut(s) 181, 248, 259, 614, 703, 747
CviKI_1 RGCY 6 cut(s) 181, 248, 259, 614, 703, 747
CviQI GTAC 2 cut(s) 211, 529
DdeI CTNAG 2 cut(s) 660, 756
DpnI GATC 2 cut(s) 323, 648
DpnII GATC 2 cut(s) 321, 646
DraI TTTAAA 1 cut(s) 207
EaeI YGGCCR 1 cut(s) 745
Eam1104I CTCTTC 3 cut(s) 428, 536, 617
EarI CTCTTC 3 cut(s) 428, 536, 617
Eco130I CCWWGG 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 740
EcoO109I RGGNCCY 1 cut(s) 740
EcoRII CCWGG 1 cut(s) 742
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
Fnu4HI GCNGC 3 cut(s) 70, 179, 257
FokI GGATG 2 cut(s) 125, 691
Fsp4HI GCNGC 3 cut(s) 70, 179, 257
FspBI CTAG 2 cut(s) 80, 453
GluI GCNGC 3 cut(s) 70, 179, 257
HaeIII GGCC 2 cut(s) 259, 747
HinfI GANTC 4 cut(s) 56, 171, 360, 412
HphI GGTGA 2 cut(s) 146, 646
Hpy166II GTNNAC 3 cut(s) 235, 283, 381
Hpy188I TCNGA 1 cut(s) 520
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 3 cut(s) 235, 283, 381
HpyAV CCTTC 1 cut(s) 569
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4V TGCA 5 cut(s) 178, 311, 489, 735, 797
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 2 cut(s) 660, 756
Kzo9I GATC 2 cut(s) 321, 646
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 6 cut(s) 153, 510, 584, 729, 743, 756
Lsp1109I GCAGC 1 cut(s) 190
MaeI CTAG 2 cut(s) 80, 453
MaeIII GTNAC 4 cut(s) 338, 371, 420, 686
MalI GATC 2 cut(s) 323, 648
MbiI CCGCTC 1 cut(s) 69
MboI GATC 2 cut(s) 321, 646
MboII GAAGA 5 cut(s) 230, 445, 553, 634, 779
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 2 cut(s) 228, 273
MlsI TGGCCA 1 cut(s) 747
MluCI AATT 1 cut(s) 262
MluNI TGGCCA 1 cut(s) 747
MlyI GAGTC 2 cut(s) 50, 369
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 2 cut(s) 18, 25
Mox20I TGGCCA 1 cut(s) 747
MroXI GAANNNNTTC 2 cut(s) 44, 600
MscI TGGCCA 1 cut(s) 747
MseI TTAA 3 cut(s) 120, 206, 641
MslI CAYNNNNRTG 2 cut(s) 386, 405
Msp20I TGGCCA 1 cut(s) 747
MspR9I CCNGG 1 cut(s) 744
MvaI CCWGG 1 cut(s) 744
MwoI GCNNNNNNNGC 1 cut(s) 15
NcoI CCATGG 1 cut(s) 289
NdeII GATC 2 cut(s) 321, 646
NlaIV GGNNCC 1 cut(s) 227
NmuCI GTSAC 3 cut(s) 371, 420, 686
NspI RCATGY 4 cut(s) 346, 379, 538, 765
PciI ACATGT 3 cut(s) 342, 375, 534
PdmI GAANNNNTTC 2 cut(s) 44, 600
PfeI GAWTC 2 cut(s) 171, 412
PkrI GCNGC 3 cut(s) 71, 180, 258
PleI GAGTC 2 cut(s) 50, 368
PpsI GAGTC 2 cut(s) 50, 368
PpuMI RGGWCCY 1 cut(s) 740
PscI ACATGT 3 cut(s) 342, 375, 534
Psp5II RGGWCCY 1 cut(s) 740
Psp6I CCWGG 1 cut(s) 742
PspGI CCWGG 1 cut(s) 742
PspN4I GGNNCC 1 cut(s) 227
PspPI GGNCC 1 cut(s) 740
PspPPI RGGWCCY 1 cut(s) 740
PsuI RGATCY 1 cut(s) 646
RsaI GTAC 2 cut(s) 212, 530
RsaNI GTAC 2 cut(s) 211, 529
RseI CAYNNNNRTG 2 cut(s) 386, 405
SaqAI TTAA 3 cut(s) 120, 206, 641
SatI GCNGC 3 cut(s) 70, 179, 257
Sau3AI GATC 2 cut(s) 321, 646
Sau96I GGNCC 1 cut(s) 740
ScaI AGTACT 1 cut(s) 212
SchI GAGTC 2 cut(s) 50, 369
ScrFI CCNGG 1 cut(s) 744
SduI GDGCHC 2 cut(s) 228, 273
SinI GGWCC 1 cut(s) 740
SmiMI CAYNNNNRTG 2 cut(s) 386, 405
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
SpeI ACTAGT 1 cut(s) 79
Sse9I AATT 1 cut(s) 262
SsiI CCGC 3 cut(s) 69, 256, 657
SspMI CTAG 2 cut(s) 80, 453
StyD4I CCNGG 1 cut(s) 742
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 385
TaqI TCGA 3 cut(s) 84, 147, 443
TaqII GACCGA 1 cut(s) 730
TasI AATT 1 cut(s) 262
TatI WGTACW 1 cut(s) 210
TauI GCSGC 2 cut(s) 72, 259
TfiI GAWTC 2 cut(s) 171, 412
Tru1I TTAA 3 cut(s) 120, 206, 641
Tru9I TTAA 3 cut(s) 120, 206, 641
TscAI CASTG 3 cut(s) 307, 390, 429
TseFI GTSAC 3 cut(s) 371, 420, 686
TseI GCWGC 1 cut(s) 178
Tsp45I GTSAC 3 cut(s) 371, 420, 686
TspDTI ATGAA 6 cut(s) 37, 53, 89, 143, 404, 491
TspRI CASTG 3 cut(s) 307, 390, 429
VpaK11BI GGWCC 1 cut(s) 740
XceI RCATGY 4 cut(s) 346, 379, 538, 765
XmnI GAANNNNTTC 2 cut(s) 44, 600
XspI CTAG 2 cut(s) 80, 453
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.