Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Reverse (-)

19833402 .. 19835552

Gene Structure 2151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28641.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGACACCGATTGGACCAGGTGAGGACTGGAAAACGTGGCCGCCAAAGGCTTGCAGGTGGTGGCCGCCAAGAGCATCGTTGTTTGCTTGGAAGAGAGAAGGGTTTGGGGTTGGTAAGGTTTGGGCTTATGGGCCTGGGTTTGGGCTCATTTCTTTACGCAAGCATTTTGGTGGACTTAAGCCAAAGTTTGCCCAGAAATTATCTACTTCGTCTCACATGACATCCTCGAGGTCTGATCGAGGAGAGGCTAGCCCTACTAATAAGGGTAAGGAGGTATGCTCCTCCTCTCGTCAACCGCCGTCATCAGCATTGACGACGCCCATGATTGTTCAGCCGCTAGCATCCATGGCCCCGCCGGCGTCTTTATCAGTTCATCCGGCGGCTGCCAGACTTCATCAGTTCGTCCGTCGGCCGGCCAGATCCAGTCAGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.71

Weight (kDa)

11.24

Isoelectric Point (pI)

53.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	45
AbsI	CCTCGAGG	1 cut(s)	226
Acc36I	ACCTGC	1 cut(s)	45
AciI	CCGC	6 cut(s)	41, 65, 296, 335, 353, 380
AclWI	GGATC	1 cut(s)	414
AcoI	YGGCCR	4 cut(s)	38, 62, 410, 414
AcyI	GRCGYC	2 cut(s)	317, 359
AfiI	CCNNNNNNNGG	2 cut(s)	140, 412
AflII	CTTAAG	1 cut(s)	176
AjnI	CCWGG	2 cut(s)	16, 133
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	414
Ama87I	CYCGRG	1 cut(s)	226
AoxI	GGCC	6 cut(s)	38, 62, 131, 348, 410, 414
ApeKI	GCWGC	1 cut(s)	383
AspS9I	GGNCC	3 cut(s)	14, 131, 349
AsuHPI	GGTGA	1 cut(s)	32
AsuNHI	GCTAGC	2 cut(s)	248, 337
AvaI	CYCGRG	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	370
BceAI	ACGGC	1 cut(s)	283
BciT130I	CCWGG	2 cut(s)	18, 135
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	2 cut(s)	249, 338
BfrI	CTTAAG	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	45
BglI	GCCNNNNNGGC	1 cut(s)	356
BisI	GCNGC	5 cut(s)	41, 65, 335, 381, 384
BlsI	GCNGC	5 cut(s)	42, 66, 336, 382, 385
Bme1390I	CCNGG	2 cut(s)	18, 135
Bme18I	GGWCC	1 cut(s)	14
BmeT110I	CYCGRG	1 cut(s)	226
BmgT120I	GGNCC	3 cut(s)	14, 131, 349
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	2 cut(s)	18, 135
BmsI	GCATC	2 cut(s)	83, 350
BmtI	GCTAGC	2 cut(s)	252, 341
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
BsaHI	GRCGYC	2 cut(s)	317, 359
BsaJI	CCNNGG	2 cut(s)	134, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 412
Bse118I	RCCGGY	2 cut(s)	355, 412
Bse1I	ACTGG	2 cut(s)	32, 423
BseBI	CCWGG	2 cut(s)	18, 135
BseDI	CCNNGG	2 cut(s)	134, 345
BseGI	GGATG	3 cut(s)	221, 341, 373
BseLI	CCNNNNNNNGG	2 cut(s)	140, 412
BseNI	ACTGG	2 cut(s)	32, 423
BseRI	GAGGAG	3 cut(s)	255, 271, 274
BseX3I	CGGCCG	1 cut(s)	410
BseXI	GCAGC	1 cut(s)	370
Bsh1285I	CGRYCG	1 cut(s)	413
BshFI	GGCC	6 cut(s)	40, 64, 133, 350, 412, 416
BsiEI	CGRYCG	1 cut(s)	413
BsiHKCI	CYCGRG	1 cut(s)	226
BsiSI	CCGG	3 cut(s)	356, 377, 413
BslI	CCNNNNNNNGG	2 cut(s)	140, 412
BsmAI	GTCTC	1 cut(s)	216
BsmBI	CGTCTC	1 cut(s)	216
BsnI	GGCC	6 cut(s)	40, 64, 133, 350, 412, 416
BsoBI	CYCGRG	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	235, 419
Bsp19I	CCATGG	1 cut(s)	345
BspACI	CCGC	6 cut(s)	41, 65, 296, 335, 353, 380
BspANI	GGCC	6 cut(s)	40, 64, 133, 350, 412, 416
BspLI	GGNNCC	1 cut(s)	351
BspMI	ACCTGC	1 cut(s)	45
BspOI	GCTAGC	2 cut(s)	252, 341
BspPI	GGATC	1 cut(s)	414
BspTI	CTTAAG	1 cut(s)	176
BsrFI	RCCGGY	2 cut(s)	355, 412
BsrI	ACTGG	2 cut(s)	32, 423
BssAI	RCCGGY	2 cut(s)	355, 412
BssECI	CCNNGG	2 cut(s)	134, 345
BssMI	GATC	2 cut(s)	235, 419
BssNI	GRCGYC	2 cut(s)	317, 359
BssT1I	CCWWGG	1 cut(s)	345
Bst2UI	CCWGG	2 cut(s)	18, 135
Bst6I	CTCTTC	1 cut(s)	86
BstACI	GRCGYC	2 cut(s)	317, 359
BstAFI	CTTAAG	1 cut(s)	176
BstC8I	GCNNGC	6 cut(s)	52, 161, 250, 339, 357, 414
BstDEI	CTNAG	1 cut(s)	432
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	3 cut(s)	221, 341, 373
BstKTI	GATC	2 cut(s)	238, 422
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	2 cut(s)	235, 419
BstMCI	CGRYCG	1 cut(s)	413
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 356
BstNI	CCWGG	2 cut(s)	18, 135
BstSCI	CCNGG	2 cut(s)	16, 133
BstV1I	GCAGC	1 cut(s)	370
BstX2I	RGATCY	1 cut(s)	419
BstYI	RGATCY	1 cut(s)	419
BstZI	CGGCCG	1 cut(s)	410
BsuRI	GGCC	6 cut(s)	40, 64, 133, 350, 412, 416
BtgI	CCRYGG	1 cut(s)	345
BtsCI	GGATG	3 cut(s)	221, 341, 373
BveI	ACCTGC	1 cut(s)	45
Cac8I	GCNNGC	6 cut(s)	52, 161, 250, 339, 357, 414
Cfr10I	RCCGGY	2 cut(s)	355, 412
Cfr13I	GGNCC	3 cut(s)	14, 131, 349
CseI	GACGC	2 cut(s)	325, 348
CsiI	ACCWGGT	1 cut(s)	16
CviAII	CATG	3 cut(s)	217, 322, 346
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	2 cut(s)	237, 421
DpnII	GATC	2 cut(s)	235, 419
EaeI	YGGCCR	4 cut(s)	38, 62, 410, 414
EagI	CGGCCG	1 cut(s)	410
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
EclXI	CGGCCG	1 cut(s)	410
Eco130I	CCWWGG	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	14
Eco52I	CGGCCG	1 cut(s)	410
Eco88I	CYCGRG	1 cut(s)	226
EcoRII	CCWGG	2 cut(s)	16, 133
EcoT14I	CCWWGG	1 cut(s)	345
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	345
Esp3I	CGTCTC	1 cut(s)	216
FaeI	CATG	3 cut(s)	220, 325, 349
FaiI	YATR	5 cut(s)	129, 218, 277, 323, 347
FatI	CATG	3 cut(s)	216, 321, 345
FauI	CCCGC	1 cut(s)	360
Fnu4HI	GCNGC	5 cut(s)	41, 65, 335, 381, 384
FokI	GGATG	3 cut(s)	208, 328, 360
FriOI	GRGCYC	1 cut(s)	147
FseI	GGCCGGCC	1 cut(s)	416
Fsp4HI	GCNGC	5 cut(s)	41, 65, 335, 381, 384
FspBI	CTAG	2 cut(s)	249, 338
GluI	GCNGC	5 cut(s)	41, 65, 335, 381, 384
HaeIII	GGCC	6 cut(s)	40, 64, 133, 350, 412, 416
HapII	CCGG	3 cut(s)	356, 377, 413
HgaI	GACGC	2 cut(s)	325, 348
Hin1I	GRCGYC	2 cut(s)	317, 359
Hin1II	CATG	3 cut(s)	220, 325, 349
HincII	GTYRAC	1 cut(s)	293
HindII	GTYRAC	1 cut(s)	293
HpaII	CCGG	3 cut(s)	356, 377, 413
HphI	GGTGA	1 cut(s)	32
Hpy166II	GTNNAC	2 cut(s)	173, 293
Hpy188I	TCNGA	2 cut(s)	235, 429
Hpy8I	GTNNAC	2 cut(s)	173, 293
Hpy99I	CGWCG	2 cut(s)	319, 411
HpyAV	CCTTC	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 356
HpyF3I	CTNAG	1 cut(s)	432
HpySE526I	ACGT	1 cut(s)	35
Hsp92I	GRCGYC	2 cut(s)	317, 359
Hsp92II	CATG	3 cut(s)	220, 325, 349
KroI	GCCGGC	2 cut(s)	355, 412
KroNI	GCCGGC	2 cut(s)	357, 414
Kzo9I	GATC	2 cut(s)	235, 419
LmnI	GCTCC	1 cut(s)	284
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	2 cut(s)	83, 350
MabI	ACCWGGT	1 cut(s)	16
MaeI	CTAG	2 cut(s)	249, 338
MaeII	ACGT	1 cut(s)	35
MalI	GATC	2 cut(s)	237, 421
MboI	GATC	2 cut(s)	235, 419
MboII	GAAGA	1 cut(s)	103
MflI	RGATCY	1 cut(s)	419
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	1 cut(s)	197
MnlI	CCTC	8 cut(s)	16, 222, 233, 235, 238, 265, 292, 295
MreI	CGCCGGCG	1 cut(s)	355
MroNI	GCCGGC	2 cut(s)	355, 412
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	168
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	3 cut(s)	356, 377, 413
MspR9I	CCNGG	2 cut(s)	18, 135
MvaI	CCWGG	2 cut(s)	18, 135
MwoI	GCNNNNNNNGC	2 cut(s)	347, 356
NaeI	GCCGGC	2 cut(s)	357, 414
NcoI	CCATGG	1 cut(s)	345
NdeII	GATC	2 cut(s)	235, 419
NgoMIV	GCCGGC	2 cut(s)	355, 412
NheI	GCTAGC	2 cut(s)	248, 337
NlaIII	CATG	3 cut(s)	220, 325, 349
NlaIV	GGNNCC	1 cut(s)	351
PaeR7I	CTCGAG	1 cut(s)	226
PaqCI	CACCTGC	1 cut(s)	45
PdiI	GCCGGC	2 cut(s)	357, 414
PkrI	GCNGC	5 cut(s)	42, 66, 336, 382, 385
Psp6I	CCWGG	2 cut(s)	16, 133
PspGI	CCWGG	2 cut(s)	16, 133
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	3 cut(s)	14, 131, 349
PspXI	VCTCGAGB	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	419
RigI	GGCCGGCC	1 cut(s)	416
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	5 cut(s)	41, 65, 335, 381, 384
Sau3AI	GATC	2 cut(s)	235, 419
Sau96I	GGNCC	3 cut(s)	14, 131, 349
ScrFI	CCNGG	2 cut(s)	18, 135
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	6 cut(s)	22, 38, 59, 120, 233, 276
SexAI	ACCWGGT	1 cut(s)	16
SfaNI	GCATC	2 cut(s)	83, 350
Sfr274I	CTCGAG	1 cut(s)	226
SgrAI	CRCCGGYG	1 cut(s)	355
SinI	GGWCC	1 cut(s)	14
SlaI	CTCGAG	1 cut(s)	226
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	2 cut(s)	176, 226
SmoI	CTYRAG	2 cut(s)	176, 226
Sse9I	AATT	1 cut(s)	197
SsiI	CCGC	6 cut(s)	41, 65, 296, 335, 353, 380
SspMI	CTAG	2 cut(s)	249, 338
StyD4I	CCNGG	2 cut(s)	16, 133
StyI	CCWWGG	1 cut(s)	345
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	2 cut(s)	227, 238
TasI	AATT	1 cut(s)	197
TauI	GCSGC	4 cut(s)	43, 67, 337, 383
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseI	GCWGC	1 cut(s)	383
TspDTI	ATGAA	2 cut(s)	362, 383
TspGWI	ACGGA	1 cut(s)	395
Vha464I	CTTAAG	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	14
XcmI	CCANNNNNNNNNTGG	1 cut(s)	24
XhoI	CTCGAG	1 cut(s)	226
XspI	CTAG	2 cut(s)	249, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.