Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Reverse (-)

28045755 .. 28046965

Gene Structure 1211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g37992.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCCATTTGTCTACCAAATGGTGGCTCATCAGATTTGGTATCAGAGCCACTCTGCCGTGTGGTGCGAGTGTGCCGACGAGGGCGCCTTTTGGTGGCTCAGCGGCTTCGGAGGGGATGGGTACTCCGAGGTTAAGCATGTTGATGCTAGAGCAATCCCCAAGATGGAAGGATTTGGTATTCCATTTGGCTCTGAAGTGACAAATTTGGCTCTTGGCCATCCTAACCTGGGATTTGGAGTACCCATCCCCTCCGAAGATTGGCGTAGGAGTAACATTTTCCAAACCCGTGTTCGATGCAGTAATCAGTTGTGCACCCTAGTCATAGATGGAGGGAGCTGCTCTAATATCATCTCTGAAGAAGCTGTTCGCAAACTTGGGTTGTCTACCGAACCACATCCAAATCCTCATAAGGTGGCATGGGTAAACAACACAAATCTCAAGGTCAATGATCGTTGTTTGGTGACCTATTCTATTGGGAAGTTGGTTGACACGGTAACCTGTGATGTGCTGCCCATGAAAGTGTGTCATATTCTTTTGGGCCGACCATGGCTATATGATAAGAAGGTGCAGCATTGTGGCTACAACAACACATATTCCTTCCAAGATGGAAGTCACGAGTTCAAGCTCGTACCATCTAAAGATTTGCCCACCATAAAGCTCAAAAAGACAGCTGGCACGTTCCTCCTTAAGCAGACCGAAAGTGATGACTCTATACTTGGTCCAGTTCCAAACTCAACCAAGTTGAGTTCTTTTCAGAGGGGGAGAATTAATGGAGCAGCCATAAGCTGGCTGGAACAGAAATATCCTCTTTGGAAGCCAAAGACTAAGCCCAACCATTTTTGGTCCAAAGGAAAGTCTACTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 Retrotrans_gag

Protein Analysis

289

Amino Acids

32.38

Weight (kDa)

8.88

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AccB7I	CCANNNNNTGG	2 cut(s)	22, 786
AccI	GTMKAC	3 cut(s)	12, 383, 857
AciI	CCGC	1 cut(s)	102
AcoI	YGGCCR	1 cut(s)	214
AcsI	RAATTY	1 cut(s)	202
AcuI	CTGAAG	2 cut(s)	213, 375
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	3 cut(s)	122, 240, 630
AfiI	CCNNNNNNNGG	6 cut(s)	22, 93, 163, 227, 258, 786
AflII	CTTAAG	1 cut(s)	686
AgsI	TTSAA	1 cut(s)	622
AjnI	CCWGG	1 cut(s)	225
AjuI	GAANNNNNNNTTGG	3 cut(s)	273, 305, 844
AluBI	AGCT	6 cut(s)	336, 362, 625, 658, 671, 786
AluI	AGCT	6 cut(s)	336, 362, 625, 658, 671, 786
Alw21I	GWGCWC	1 cut(s)	314
Alw44I	GTGCAC	1 cut(s)	310
AoxI	GGCC	2 cut(s)	214, 538
ApaLI	GTGCAC	1 cut(s)	310
ApeKI	GCWGC	4 cut(s)	336, 508, 568, 776
ApoI	RAATTY	1 cut(s)	202
AseI	ATTAAT	1 cut(s)	768
Asp700I	GAANNNNTTC	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	3 cut(s)	538, 719, 843
AsuHPI	GGTGA	1 cut(s)	472
AvaII	GGWCC	2 cut(s)	719, 843
BaeGI	GKGCMC	1 cut(s)	314
BalI	TGGCCA	1 cut(s)	216
BanI	GGYRCC	1 cut(s)	83
BauI	CACGAG	1 cut(s)	614
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	4 cut(s)	323, 495, 580, 788
BccI	CCATC	7 cut(s)	110, 157, 225, 251, 320, 599, 640
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	1 cut(s)	227
BfaI	CTAG	2 cut(s)	147, 317
BfoI	RGCGCY	1 cut(s)	87
BfrI	CTTAAG	1 cut(s)	686
BisI	GCNGC	5 cut(s)	103, 337, 509, 569, 777
BlpI	GCTNAGC	1 cut(s)	98
BlsI	GCNGC	5 cut(s)	104, 338, 510, 570, 778
Bme1390I	CCNGG	1 cut(s)	227
Bme18I	GGWCC	2 cut(s)	719, 843
BmgT120I	GGNCC	3 cut(s)	538, 719, 843
BmiI	GGNNCC	1 cut(s)	85
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	2 cut(s)	133, 284
Bpu1102I	GCTNAGC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	422
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	126, 226, 545
Bsc4I	CCNNNNNNNGG	6 cut(s)	22, 93, 163, 227, 258, 786
Bse1I	ACTGG	1 cut(s)	722
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	3 cut(s)	126, 226, 545
BseGI	GGATG	4 cut(s)	121, 217, 243, 394
BseLI	CCNNNNNNNGG	6 cut(s)	22, 93, 163, 227, 258, 786
BseMII	CTCAG	1 cut(s)	112
BseNI	ACTGG	1 cut(s)	722
BseSI	GKGCMC	1 cut(s)	314
BseXI	GCAGC	4 cut(s)	323, 495, 580, 788
BsgI	GTGCAG	1 cut(s)	587
BshFI	GGCC	2 cut(s)	216, 540
BshNI	GGYRCC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	314
BslI	CCNNNNNNNGG	6 cut(s)	22, 93, 163, 227, 258, 786
BsnI	GGCC	2 cut(s)	216, 540
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp143I	GATC	1 cut(s)	448
Bsp1720I	GCTNAGC	1 cut(s)	98
Bsp19I	CCATGG	1 cut(s)	545
BspACI	CCGC	1 cut(s)	102
BspANI	GGCC	2 cut(s)	216, 540
BspCNI	CTCAG	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	85
BspT107I	GGYRCC	1 cut(s)	83
BspTI	CTTAAG	1 cut(s)	686
BsrI	ACTGG	1 cut(s)	722
BssECI	CCNNGG	3 cut(s)	126, 226, 545
BssMI	GATC	1 cut(s)	448
BssNI	GRCGYC	1 cut(s)	84
BssSI	CACGAG	1 cut(s)	614
BssT1I	CCWWGG	1 cut(s)	545
Bst2BI	CACGAG	1 cut(s)	614
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	493
BstACI	GRCGYC	1 cut(s)	84
BstAFI	CTTAAG	1 cut(s)	686
BstC8I	GCNNGC	2 cut(s)	673, 788
BstDEI	CTNAG	2 cut(s)	98, 825
BstDSI	CCRYGG	1 cut(s)	545
BstEII	GGTNACC	2 cut(s)	460, 493
BstF5I	GGATG	4 cut(s)	121, 217, 243, 394
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	1 cut(s)	451
BstMBI	GATC	1 cut(s)	448
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	140
BstPI	GGTNACC	2 cut(s)	460, 493
BstSCI	CCNGG	1 cut(s)	225
BstSLI	GKGCMC	1 cut(s)	314
BstV1I	GCAGC	4 cut(s)	323, 495, 580, 788
BsuRI	GGCC	2 cut(s)	216, 540
BtgI	CCRYGG	1 cut(s)	545
BtsCI	GGATG	4 cut(s)	121, 217, 243, 394
Cac8I	GCNNGC	2 cut(s)	673, 788
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	3 cut(s)	538, 719, 843
Csp6I	GTAC	3 cut(s)	121, 239, 629
CviAII	CATG	4 cut(s)	137, 417, 514, 546
CviQI	GTAC	3 cut(s)	121, 239, 629
DdeI	CTNAG	2 cut(s)	98, 825
DinI	GGCGCC	1 cut(s)	85
DpnI	GATC	1 cut(s)	450
DpnII	GATC	1 cut(s)	448
EaeI	YGGCCR	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	545
Eco47I	GGWCC	2 cut(s)	719, 843
Eco57I	CTGAAG	2 cut(s)	213, 375
Eco91I	GGTNACC	2 cut(s)	460, 493
EcoO65I	GGTNACC	2 cut(s)	460, 493
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	545
EgeI	GGCGCC	1 cut(s)	85
EheI	GGCGCC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	545
FaeI	CATG	4 cut(s)	140, 420, 517, 549
FatI	CATG	4 cut(s)	136, 416, 513, 545
FblI	GTMKAC	3 cut(s)	12, 383, 857
Fnu4HI	GCNGC	5 cut(s)	103, 337, 509, 569, 777
FokI	GGATG	4 cut(s)	128, 204, 230, 381
Fsp4HI	GCNGC	5 cut(s)	103, 337, 509, 569, 777
FspBI	CTAG	2 cut(s)	147, 317
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	5 cut(s)	103, 337, 509, 569, 777
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	216, 540
HhaI	GCGC	1 cut(s)	86
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	4 cut(s)	140, 420, 517, 549
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HinfI	GANTC	1 cut(s)	707
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	6 cut(s)	13, 312, 384, 424, 487, 858
Hpy188I	TCNGA	8 cut(s)	33, 45, 110, 127, 193, 253, 355, 756
Hpy188III	TCNNGA	1 cut(s)	614
Hpy8I	GTNNAC	6 cut(s)	13, 312, 384, 424, 487, 858
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	161, 556, 607
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4IV	ACGT	1 cut(s)	677
HpyCH4V	TGCA	3 cut(s)	297, 312, 568
HpyF3I	CTNAG	2 cut(s)	98, 825
HpySE526I	ACGT	1 cut(s)	677
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	4 cut(s)	140, 420, 517, 549
HspAI	GCGC	1 cut(s)	84
KasI	GGCGCC	1 cut(s)	83
Kzo9I	GATC	1 cut(s)	448
LmnI	GCTCC	2 cut(s)	333, 773
LpnPI	CCDG	7 cut(s)	212, 239, 511, 657, 735, 772, 776
Lsp1109I	GCAGC	4 cut(s)	323, 495, 580, 788
LweI	GCATC	2 cut(s)	133, 284
MaeI	CTAG	2 cut(s)	147, 317
MaeII	ACGT	1 cut(s)	677
MaeIII	GTNAC	5 cut(s)	196, 269, 460, 493, 611
MalI	GATC	1 cut(s)	450
MboI	GATC	1 cut(s)	448
MboII	GAAGA	2 cut(s)	266, 368
MhlI	GDGCHC	1 cut(s)	314
MlsI	TGGCCA	1 cut(s)	216
MluCI	AATT	2 cut(s)	202, 765
MluNI	TGGCCA	1 cut(s)	216
Mly113I	GGCGCC	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	701
MnlI	CCTC	9 cut(s)	73, 104, 121, 259, 323, 414, 692, 750, 816
Mox20I	TGGCCA	1 cut(s)	216
MroXI	GAANNNNTTC	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	3 cut(s)	132, 687, 768
MslI	CAYNNNNRTG	2 cut(s)	141, 518
Msp20I	TGGCCA	1 cut(s)	216
MspA1I	CMGCKG	2 cut(s)	102, 671
MspCI	CTTAAG	1 cut(s)	686
MspR9I	CCNGG	1 cut(s)	227
MvaI	CCWGG	1 cut(s)	227
NarI	GGCGCC	1 cut(s)	84
NcoI	CCATGG	1 cut(s)	545
NdeII	GATC	1 cut(s)	448
NlaIII	CATG	4 cut(s)	140, 420, 517, 549
NlaIV	GGNNCC	1 cut(s)	85
NmuCI	GTSAC	3 cut(s)	196, 460, 611
NspI	RCATGY	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	363
PflMI	CCANNNNNTGG	2 cut(s)	22, 786
PkrI	GCNGC	5 cut(s)	104, 338, 510, 570, 778
PleI	GAGTC	1 cut(s)	701
PluTI	GGCGCC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	701
PshBI	ATTAAT	1 cut(s)	768
Psp6I	CCWGG	1 cut(s)	225
PspEI	GGTNACC	2 cut(s)	460, 493
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	85
PspPI	GGNCC	3 cut(s)	538, 719, 843
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	3 cut(s)	122, 240, 630
RsaNI	GTAC	3 cut(s)	121, 239, 629
RseI	CAYNNNNRTG	2 cut(s)	141, 518
SaqAI	TTAA	3 cut(s)	132, 687, 768
SatI	GCNGC	5 cut(s)	103, 337, 509, 569, 777
Sau3AI	GATC	1 cut(s)	448
Sau96I	GGNCC	3 cut(s)	538, 719, 843
SchI	GAGTC	1 cut(s)	701
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	314
SfaNI	GCATC	2 cut(s)	133, 284
SfoI	GGCGCC	1 cut(s)	85
SinI	GGWCC	2 cut(s)	719, 843
SmiMI	CAYNNNNRTG	2 cut(s)	141, 518
SmlI	CTYRAG	2 cut(s)	437, 686
SmoI	CTYRAG	2 cut(s)	437, 686
Sse9I	AATT	2 cut(s)	202, 765
SsiI	CCGC	1 cut(s)	102
SspDI	GGCGCC	1 cut(s)	83
SspMI	CTAG	2 cut(s)	147, 317
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	545
TaaI	ACNGT	1 cut(s)	493
TaiI	ACGT	1 cut(s)	680
TaqI	TCGA	1 cut(s)	292
TaqII	GACCGA	1 cut(s)	710
TasI	AATT	2 cut(s)	202, 765
TauI	GCSGC	1 cut(s)	105
Tru1I	TTAA	3 cut(s)	132, 687, 768
Tru9I	TTAA	3 cut(s)	132, 687, 768
TseFI	GTSAC	3 cut(s)	196, 460, 611
TseI	GCWGC	4 cut(s)	336, 508, 568, 776
Tsp45I	GTSAC	3 cut(s)	196, 460, 611
TspDTI	ATGAA	1 cut(s)	530
Van91I	CCANNNNNTGG	2 cut(s)	22, 786
Vha464I	CTTAAG	1 cut(s)	686
VneI	GTGCAC	1 cut(s)	310
VpaK11BI	GGWCC	2 cut(s)	719, 843
VspI	ATTAAT	1 cut(s)	768
XapI	RAATTY	1 cut(s)	202
XceI	RCATGY	1 cut(s)	140
XcmI	CCANNNNNNNNNTGG	1 cut(s)	787
XmiI	GTMKAC	3 cut(s)	12, 383, 857
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	2 cut(s)	147, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.