FvH4_5g24054

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000607
Physical Location & Seq
Forward (+)
15342294 .. 15344530
2237 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g24054.t1

Sequence Viewer

Length: 1470 bp
ATGGATGCGCCTGAGAATGAAAAACAGCCGAATAAGGGTGTAGAGGATATGGCAGTAGATGTTCCCGGATTTGGAAGCCTGACAATCGCCGATGTGCGAGCTTTGACCTTCGAAACAGTGGATGAGGCAGAGAGATTCTACTGTGCATATTTAGCAGCAGTTGGATTTGGATGTAGGAAGGATGACAAGGGAGAGTCTAACGGTTTGATTTGGTGGAGGCAGTGGGTCTGCTGCAAGGAAGGGACTCGAGATAAAAAGTACTTGGAAGCAGATGGTAAAAATGCCTTTACCCACTTAAAGTCTGAGGAAGAGTTGAAGGCTTTTAACAGATGCGTGAGGAAGTATCAAACAGTTGAGCAATTTGAAAGGTTGTGGCAGGAAATGATTGAGGAACTTGATCTCCATGACGATATTTGGATTGGGAATATGTATGAAAAGAGAGACAAGTTTTGTCAAGCATTCTTCGGTGACATATTTATGGCCGGAATGAGAAGCACACAAGGGTGTGAGGGCATGAATAAAGAATTCAAGAGGGTGCTTGGTAAAGGGAAATCCCTTGTGGAGCTTGTTACGTTGGTGTCTAGATTACTTATGAAACTAAGACACAATCAGGAAAAGGATGAATTCATCAATATGAATTTTCCTGGTGTCGTAACTCACTTGGTAGATTTGGAGATACAAGCCTCTTCTATATTTACACACGATGTGTTTAAGTGGATTGTAAGAGAGATCAAGAAAGAGAGATTTATTACACTAAAGCAAGGAGCAAAATGTCATGAAGATGGTAGTCATGTTTACAAGGTATCAGTTTACAAACGGCCTGAATTTGACAACACTGTTGTTTACCACCCTGAGAAAGAGACTGACAGTGCAGAAGACCCGATTATGGTGTGTTCTTGCAGAATGTTTCAGTACAGGGGAGTACCATGTCGTCACATGTTCACGGTGATGATAAACGAACACATTTTTGAGCTTCACAAGTCACTGATCATCAAGAGATGGTCAAAGGACGCAAGAACTATGTGTGAGATCCCTTATCCGGATCAATCTATGCCCAGAGAAGCATTGGAAGTGAGCAGGTATGGTGCTCTAACTGCCGAATGCAATCGATTGTGTTTTTATGCTTCAAAGACAGATGCAGGGTACAACTTGTTGCAGAAGGAGATCAGTAAACTCTCATCAATTGTGGAAGGTTTTGCCAAAGAAAAAGAAAAAGTTCAAGCTCCGGCCACACCCAGCAACATCAAAGGTAATGTTGTGAGAGACCCTATCCCGGTTAGGACCAAAGGCAGAGAAAAAATGACAAGAAGACTGAGGCTCCCAGACGACCGATTACTTGTGGTTATTGCCAAGGTATTGGACACAACAGTCAAACATGTAATGTTAGGAAGGAGAAAGAAAAAGCTAAGAAGAGCAATGAAAATGACGAACGAAACACTGACCCTCGTCCTTCAGTTGCAACACCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

490

Amino Acids

56.75

Weight (kDa)

8.74

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 298 - 318 2.3e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1367
Acc36I ACCTGC 1 cut(s) 1068
AccIII TCCGGA 1 cut(s) 1039
AclWI GGATC 2 cut(s) 1024, 1050
AcoI YGGCCR 2 cut(s) 480, 1227
AcsI RAATTY 4 cut(s) 524, 623, 637, 824
AcuI CTGAAG 1 cut(s) 1436
AdeI CACNNNGTG 1 cut(s) 706
AfaI GTAC 4 cut(s) 260, 914, 924, 1145
AfiI CCNNNNNNNGG 5 cut(s) 35, 71, 886, 1039, 1273
AflIII ACRYGT 2 cut(s) 936, 1375
AgsI TTSAA 5 cut(s) 316, 365, 529, 1128, 1220
AjnI CCWGG 1 cut(s) 643
AleI CACNNNNGTG 1 cut(s) 502
AloI GAACNNNNNNTCC 2 cut(s) 384, 416
AluBI AGCT 5 cut(s) 101, 565, 973, 1223, 1405
AluI AGCT 5 cut(s) 101, 565, 973, 1223, 1405
Alw21I GWGCWC 1 cut(s) 1090
Alw26I GTCTC 3 cut(s) 435, 854, 1257
AlwI GGATC 2 cut(s) 1024, 1050
Ama87I CYCGRG 1 cut(s) 246
Aor13HI TCCGGA 1 cut(s) 1039
AoxI GGCC 3 cut(s) 480, 818, 1227
ApeKI GCWGC 2 cut(s) 155, 231
ApoI RAATTY 4 cut(s) 524, 623, 637, 824
Asp700I GAANNNNTTC 1 cut(s) 1215
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 1281
AsuC2I CCSGG 2 cut(s) 66, 1274
AsuHPI GGTGA 2 cut(s) 479, 958
AsuII TTCGAA 1 cut(s) 111
AvaI CYCGRG 1 cut(s) 246
AvaII GGWCC 1 cut(s) 1281
BbsI GAAGAC 2 cut(s) 882, 1315
Bbv12I GWGCWC 1 cut(s) 1090
BbvI GCAGC 2 cut(s) 167, 218
BccI CCATC 3 cut(s) 266, 776, 993
BceAI ACGGC 1 cut(s) 833
BciT130I CCWGG 1 cut(s) 645
BclI TGATCA 1 cut(s) 987
BcnI CCSGG 2 cut(s) 66, 1274
BcoDI GTCTC 3 cut(s) 435, 854, 1257
BfaI CTAG 1 cut(s) 582
BfuAI ACCTGC 1 cut(s) 1068
BisI GCNGC 2 cut(s) 156, 232
BlsI GCNGC 2 cut(s) 157, 233
BmcAI AGTACT 1 cut(s) 260
Bme1390I CCNGG 3 cut(s) 66, 645, 1274
Bme18I GGWCC 1 cut(s) 1281
BmeT110I CYCGRG 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 1281
BmiI GGNNCC 1 cut(s) 1319
BmrFI CCNGG 3 cut(s) 66, 645, 1274
BmsI GCATC 2 cut(s) 320, 1126
BoxI GACNNNNGTC 1 cut(s) 1445
BpiI GAAGAC 2 cut(s) 882, 1315
Bpu14I TTCGAA 1 cut(s) 111
BpuMI CCSGG 2 cut(s) 66, 1274
Bsa29I ATCGAT 1 cut(s) 1108
BsaI GGTCTC 1 cut(s) 1257
BsaJI CCNNGG 1 cut(s) 1350
BsaWI WCCGGW 1 cut(s) 1039
BsaXI ACNNNNNCTCC 4 cut(s) 384, 414, 1302, 1332
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 71, 886, 1039, 1273
Bse3DI GCAATG 1 cut(s) 1422
BseAI TCCGGA 1 cut(s) 1039
BseBI CCWGG 1 cut(s) 645
BseCI ATCGAT 1 cut(s) 1108
BseDI CCNNGG 1 cut(s) 1350
BseGI GGATG 5 cut(s) 10, 127, 176, 187, 625
BseLI CCNNNNNNNGG 5 cut(s) 35, 71, 886, 1039, 1273
BseMI GCAATG 1 cut(s) 1422
BseMII CTCAG 3 cut(s) 294, 843, 1304
BseXI GCAGC 2 cut(s) 167, 218
BseYI CCCAGC 1 cut(s) 1235
BsgI GTGCAG 1 cut(s) 891
Bsh1285I CGRYCG 1 cut(s) 1330
BshFI GGCC 3 cut(s) 482, 820, 1229
BshVI ATCGAT 1 cut(s) 1108
BsiEI CGRYCG 1 cut(s) 1330
BsiHKAI GWGCWC 1 cut(s) 1090
BsiHKCI CYCGRG 1 cut(s) 246
BsiSI CCGG 5 cut(s) 66, 483, 1040, 1226, 1274
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 5 cut(s) 35, 71, 886, 1039, 1273
BsmAI GTCTC 3 cut(s) 435, 854, 1257
BsmFI GGGAC 1 cut(s) 256
BsmI GAATGC 2 cut(s) 458, 1106
BsnI GGCC 3 cut(s) 482, 820, 1229
Bso31I GGTCTC 1 cut(s) 1257
BsoBI CYCGRG 1 cut(s) 246
Bsp119I TTCGAA 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 1090
Bsp13I TCCGGA 1 cut(s) 1039
Bsp143I GATC 6 cut(s) 397, 729, 987, 1029, 1042, 1164
BspANI GGCC 3 cut(s) 482, 820, 1229
BspCNI CTCAG 4 cut(s) 4, 295, 844, 1305
BspDI ATCGAT 1 cut(s) 1108
BspEI TCCGGA 1 cut(s) 1039
BspHI TCATGA 1 cut(s) 775
BspLI GGNNCC 1 cut(s) 1319
BspMI ACCTGC 1 cut(s) 1068
BspPI GGATC 2 cut(s) 1024, 1050
BspQI GCTCTTC 1 cut(s) 1405
BspT104I TTCGAA 1 cut(s) 111
BspTNI GGTCTC 1 cut(s) 1257
BsrDI GCAATG 1 cut(s) 1422
BssECI CCNNGG 1 cut(s) 1350
BssMI GATC 6 cut(s) 397, 729, 987, 1029, 1042, 1164
BssT1I CCWWGG 1 cut(s) 1350
Bst2UI CCWGG 1 cut(s) 645
Bst4CI ACNGT 8 cut(s) 118, 143, 203, 352, 838, 869, 946, 1369
Bst6I CTCTTC 3 cut(s) 303, 691, 1405
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 6 cut(s) 12, 303, 599, 852, 1313, 1406
BstF5I GGATG 5 cut(s) 10, 127, 176, 187, 625
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 6 cut(s) 400, 732, 990, 1032, 1045, 1167
BstMAI GTCTC 3 cut(s) 435, 854, 1257
BstMBI GATC 6 cut(s) 397, 729, 987, 1029, 1042, 1164
BstMCI CGRYCG 1 cut(s) 1330
BstMWI GCNNNNNNNGC 2 cut(s) 152, 1094
BstNI CCWGG 1 cut(s) 645
BstNSI RCATGY 2 cut(s) 940, 1379
BstPAI GACNNNNGTC 1 cut(s) 1445
BstSCI CCNGG 3 cut(s) 64, 643, 1272
BstV1I GCAGC 2 cut(s) 167, 218
BstV2I GAAGAC 2 cut(s) 882, 1315
BstX2I RGATCY 1 cut(s) 1029
BstXI CCANNNNNNTGG 1 cut(s) 1357
BstYI RGATCY 1 cut(s) 1029
Bsu15I ATCGAT 1 cut(s) 1108
BsuRI GGCC 3 cut(s) 482, 820, 1229
BsuTUI ATCGAT 1 cut(s) 1108
BtsCI GGATG 5 cut(s) 10, 127, 176, 187, 625
BtsI GCAGTG 1 cut(s) 227
BtsIMutI CAGTG 6 cut(s) 123, 227, 834, 874, 983, 1436
BveI ACCTGC 1 cut(s) 1068
Cac8I GCNNGC 1 cut(s) 99
CciI TCATGA 1 cut(s) 775
CfoI GCGC 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 1281
ClaI ATCGAT 1 cut(s) 1108
CseI GACGC 1 cut(s) 1019
Csp6I GTAC 4 cut(s) 259, 913, 923, 1144
CviAII CATG 7 cut(s) 404, 514, 776, 791, 927, 937, 1376
CviQI GTAC 4 cut(s) 259, 913, 923, 1144
DdeI CTNAG 6 cut(s) 12, 303, 599, 852, 1313, 1406
DpnI GATC 6 cut(s) 399, 731, 989, 1031, 1044, 1166
DpnII GATC 6 cut(s) 397, 729, 987, 1029, 1042, 1164
DraIII CACNNNGTG 1 cut(s) 706
DrdI GACNNNNNNGTC 1 cut(s) 1367
DseDI GACNNNNNNGTC 1 cut(s) 1367
EaeI YGGCCR 2 cut(s) 480, 1227
Eam1104I CTCTTC 3 cut(s) 303, 691, 1405
EarI CTCTTC 3 cut(s) 303, 691, 1405
Eco130I CCWWGG 1 cut(s) 1350
Eco31I GGTCTC 1 cut(s) 1257
Eco47I GGWCC 1 cut(s) 1281
Eco57I CTGAAG 1 cut(s) 1436
Eco88I CYCGRG 1 cut(s) 246
EcoRI GAATTC 2 cut(s) 524, 623
EcoRII CCWGG 1 cut(s) 643
EcoT14I CCWWGG 1 cut(s) 1350
ErhI CCWWGG 1 cut(s) 1350
FaeI CATG 7 cut(s) 407, 517, 779, 794, 930, 940, 1379
FaqI GGGAC 1 cut(s) 256
FatI CATG 7 cut(s) 403, 513, 775, 790, 926, 936, 1375
FbaI TGATCA 1 cut(s) 987
Fnu4HI GCNGC 2 cut(s) 156, 232
FokI GGATG 5 cut(s) 17, 134, 183, 194, 632
Fsp4HI GCNGC 2 cut(s) 156, 232
FspBI CTAG 1 cut(s) 582
GlaI GCGC 1 cut(s) 9
GluI GCNGC 2 cut(s) 156, 232
GsaI CCCAGC 1 cut(s) 1239
HaeIII GGCC 3 cut(s) 482, 820, 1229
HapII CCGG 5 cut(s) 66, 483, 1040, 1226, 1274
HgaI GACGC 1 cut(s) 1019
HhaI GCGC 1 cut(s) 10
Hin1II CATG 7 cut(s) 407, 517, 779, 794, 930, 940, 1379
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HinfI GANTC 3 cut(s) 135, 194, 244
HpaII CCGG 5 cut(s) 66, 483, 1040, 1226, 1274
HphI GGTGA 2 cut(s) 479, 958
Hpy166II GTNNAC 5 cut(s) 796, 811, 844, 942, 1172
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 8 cut(s) 248, 529, 582, 611, 733, 776, 994, 1040
Hpy8I GTNNAC 5 cut(s) 796, 811, 844, 942, 1172
HpyAV CCTTC 8 cut(s) 118, 172, 233, 310, 1153, 1184, 1383, 1460
HpyCH4III ACNGT 8 cut(s) 118, 143, 203, 352, 838, 869, 946, 1369
HpyCH4IV ACGT 1 cut(s) 572
HpyCH4V TGCA 8 cut(s) 146, 234, 872, 900, 1104, 1139, 1156, 1459
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 1094
HpyF3I CTNAG 6 cut(s) 12, 303, 599, 852, 1313, 1406
HpySE526I ACGT 1 cut(s) 572
Hsp92II CATG 7 cut(s) 407, 517, 779, 794, 930, 940, 1379
HspAI GCGC 1 cut(s) 8
Kpn2I TCCGGA 1 cut(s) 1039
Ksp22I TGATCA 1 cut(s) 987
Kzo9I GATC 6 cut(s) 397, 729, 987, 1029, 1042, 1164
LguI GCTCTTC 1 cut(s) 1405
LmnI GCTCC 4 cut(s) 562, 764, 1228, 1323
Lsp1109I GCAGC 2 cut(s) 167, 218
LweI GCATC 2 cut(s) 320, 1126
MaeI CTAG 1 cut(s) 582
MaeII ACGT 1 cut(s) 572
MaeIII GTNAC 5 cut(s) 467, 568, 652, 932, 981
MalI GATC 6 cut(s) 399, 731, 989, 1031, 1044, 1166
MboI GATC 6 cut(s) 397, 729, 987, 1029, 1042, 1164
MboII GAAGA 7 cut(s) 320, 454, 678, 791, 887, 1320, 1422
MfeI CAATTG 1 cut(s) 1182
MflI RGATCY 1 cut(s) 1029
MhlI GDGCHC 1 cut(s) 1090
MluCI AATT 6 cut(s) 359, 524, 623, 637, 824, 1182
MlyI GAGTC 2 cut(s) 203, 238
MmeI TCCRAC 1 cut(s) 142
MroI TCCGGA 1 cut(s) 1039
MroXI GAANNNNTTC 1 cut(s) 1215
MseI TTAA 3 cut(s) 296, 324, 711
MslI CAYNNNNRTG 5 cut(s) 476, 502, 632, 780, 947
MspI CCGG 5 cut(s) 66, 483, 1040, 1226, 1274
MspR9I CCNGG 3 cut(s) 66, 645, 1274
MunI CAATTG 1 cut(s) 1182
Mva1269I GAATGC 2 cut(s) 458, 1106
MvaI CCWGG 1 cut(s) 645
MwoI GCNNNNNNNGC 2 cut(s) 152, 1094
NciI CCSGG 2 cut(s) 66, 1274
NdeII GATC 6 cut(s) 397, 729, 987, 1029, 1042, 1164
NlaIII CATG 7 cut(s) 407, 517, 779, 794, 930, 940, 1379
NlaIV GGNNCC 1 cut(s) 1319
NmuCI GTSAC 3 cut(s) 467, 932, 981
NspI RCATGY 2 cut(s) 940, 1379
NspV TTCGAA 1 cut(s) 111
OliI CACNNNNGTG 1 cut(s) 502
PaeR7I CTCGAG 1 cut(s) 246
PagI TCATGA 1 cut(s) 775
PciI ACATGT 2 cut(s) 936, 1375
PciSI GCTCTTC 1 cut(s) 1405
PctI GAATGC 2 cut(s) 458, 1106
PdmI GAANNNNTTC 1 cut(s) 1215
PfeI GAWTC 1 cut(s) 135
PfoI TCCNGGA 1 cut(s) 64
PkrI GCNGC 2 cut(s) 157, 233
PleI GAGTC 2 cut(s) 202, 238
PpsI GAGTC 2 cut(s) 202, 238
PscI ACATGT 2 cut(s) 936, 1375
PshAI GACNNNNGTC 1 cut(s) 1445
Psp6I CCWGG 1 cut(s) 643
PspFI CCCAGC 1 cut(s) 1235
PspGI CCWGG 1 cut(s) 643
PspN4I GGNNCC 1 cut(s) 1319
PspPI GGNCC 1 cut(s) 1281
PsuI RGATCY 1 cut(s) 1029
RsaI GTAC 4 cut(s) 260, 914, 924, 1145
RsaNI GTAC 4 cut(s) 259, 913, 923, 1144
RseI CAYNNNNRTG 5 cut(s) 476, 502, 632, 780, 947
SapI GCTCTTC 1 cut(s) 1405
SaqAI TTAA 3 cut(s) 296, 324, 711
SatI GCNGC 2 cut(s) 156, 232
Sau3AI GATC 6 cut(s) 397, 729, 987, 1029, 1042, 1164
Sau96I GGNCC 1 cut(s) 1281
ScaI AGTACT 1 cut(s) 260
SchI GAGTC 2 cut(s) 203, 238
ScrFI CCNGG 3 cut(s) 66, 645, 1274
SduI GDGCHC 1 cut(s) 1090
SfaNI GCATC 2 cut(s) 320, 1126
Sfr274I CTCGAG 1 cut(s) 246
SfuI TTCGAA 1 cut(s) 111
SinI GGWCC 1 cut(s) 1281
SlaI CTCGAG 1 cut(s) 246
SmiMI CAYNNNNRTG 5 cut(s) 476, 502, 632, 780, 947
SmlI CTYRAG 1 cut(s) 246
SmoI CTYRAG 1 cut(s) 246
Sse9I AATT 6 cut(s) 359, 524, 623, 637, 824, 1182
SspMI CTAG 1 cut(s) 582
StyD4I CCNGG 3 cut(s) 64, 643, 1272
StyI CCWWGG 1 cut(s) 1350
TaaI ACNGT 8 cut(s) 118, 143, 203, 352, 838, 869, 946, 1369
TaiI ACGT 1 cut(s) 575
TaqI TCGA 3 cut(s) 111, 247, 1108
TaqII GACCGA 1 cut(s) 1344
TasI AATT 6 cut(s) 359, 524, 623, 637, 824, 1182
TatI WGTACW 2 cut(s) 258, 912
TfiI GAWTC 1 cut(s) 135
Tru1I TTAA 3 cut(s) 296, 324, 711
Tru9I TTAA 3 cut(s) 296, 324, 711
TscAI CASTG 6 cut(s) 123, 227, 841, 874, 990, 1443
TseFI GTSAC 3 cut(s) 467, 932, 981
TseI GCWGC 2 cut(s) 155, 231
Tsp45I GTSAC 3 cut(s) 467, 932, 981
TspDTI ATGAA 9 cut(s) 33, 447, 530, 608, 616, 636, 650, 792, 1433
TspRI CASTG 6 cut(s) 123, 227, 841, 874, 990, 1443
VpaK11BI GGWCC 1 cut(s) 1281
XapI RAATTY 4 cut(s) 524, 623, 637, 824
XbaI TCTAGA 1 cut(s) 581
XceI RCATGY 2 cut(s) 940, 1379
XcmI CCANNNNNNNNNTGG 1 cut(s) 1063
XhoI CTCGAG 1 cut(s) 246
XmnI GAANNNNTTC 1 cut(s) 1215
XspI CTAG 1 cut(s) 582
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.