Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Reverse (-)

11174380 .. 11175535

Gene Structure 1156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17521.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGTAGGGTTAGCTTCCTCACTTCCTTCCTCACATTCAAGTGTCTTTCTTTTCTTGAATCGAGCTCCAAATTGGAAATCCCTAATTCTGCCTTTTCTAGTTTTTGATCGTGGTTTTCCGGTGACGGGTTCCGGGAGCTCCACCGAGTCCTACGATCTTCGTATGAGGCTTAGACGTCGTTTGGAGGAGTTGTTGGAGCAGCTACGCCACGATGAGCAGCAGCGGTTTAGGCTAAGAGTGAACTCAGTTCGAACTTGGTGCTTTGAAGAATACGGGGAGGCTATGGCAATTTTCCGGCAAGTGGCCGGAATCCGACAGAATATTCCGACAAGTCGCCGGAATCCGGTGAAGACAGTTATTCCGGCAGAAGCGATGGAGCTTATAGTCAGGCGTGGGATTGACTCAAGGACATGGATATTTGGAGGCGGCGCTAGAGGAGTGTTCCGAGTAATGGAAAGATTAAGGCCTAGTTTGGTACAGCTTCGCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.9

Weight (kDa)

11.44

Isoelectric Point (pI)

64.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	178
AciI	CCGC	2 cut(s)	223, 426
AcoI	YGGCCR	1 cut(s)	303
AcyI	GRCGYC	1 cut(s)	175
AfaI	GTAC	1 cut(s)	477
AfiI	CCNNNNNNNGG	4 cut(s)	125, 301, 343, 451
AgsI	TTSAA	3 cut(s)	39, 58, 266
AluBI	AGCT	6 cut(s)	14, 65, 138, 202, 379, 481
AluI	AGCT	6 cut(s)	14, 65, 138, 202, 379, 481
Alw21I	GWGCWC	2 cut(s)	67, 140
AoxI	GGCC	2 cut(s)	303, 464
ApeKI	GCWGC	3 cut(s)	199, 217, 220
AspLEI	GCGC	1 cut(s)	431
AsuC2I	CCSGG	1 cut(s)	133
AsuHPI	GGTGA	2 cut(s)	133, 358
AsuII	TTCGAA	1 cut(s)	250
BanII	GRGCYC	2 cut(s)	67, 140
BbsI	GAAGAC	1 cut(s)	356
Bbv12I	GWGCWC	2 cut(s)	67, 140
BbvI	GCAGC	3 cut(s)	211, 229, 232
BccI	CCATC	1 cut(s)	367
BcgI	CGANNNNNNTGC	2 cut(s)	240, 274
BcnI	CCSGG	1 cut(s)	133
BfaI	CTAG	3 cut(s)	98, 432, 468
BfoI	RGCGCY	1 cut(s)	432
BisI	GCNGC	4 cut(s)	200, 218, 221, 427
BlsI	GCNGC	4 cut(s)	201, 219, 222, 428
Bme1390I	CCNGG	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	356
Bpu14I	TTCGAA	1 cut(s)	250
BpuEI	CTTGAG	1 cut(s)	388
BpuMI	CCSGG	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	175
BsaWI	WCCGGW	2 cut(s)	118, 343
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	4 cut(s)	125, 301, 343, 451
BseLI	CCNNNNNNNGG	4 cut(s)	125, 301, 343, 451
BseMII	CTCAG	1 cut(s)	258
BseRI	GAGGAG	2 cut(s)	200, 450
BseXI	GCAGC	3 cut(s)	211, 229, 232
BshFI	GGCC	2 cut(s)	305, 466
BsiHKAI	GWGCWC	2 cut(s)	67, 140
BsiSI	CCGG	7 cut(s)	119, 132, 295, 306, 337, 344, 362
BslI	CCNNNNNNNGG	4 cut(s)	125, 301, 343, 451
BsnI	GGCC	2 cut(s)	305, 466
Bsp119I	TTCGAA	1 cut(s)	250
Bsp1286I	GDGCHC	2 cut(s)	67, 140
Bsp143I	GATC	2 cut(s)	106, 154
BspACI	CCGC	2 cut(s)	223, 426
BspANI	GGCC	2 cut(s)	305, 466
BspCNI	CTCAG	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	130
BspT104I	TTCGAA	1 cut(s)	250
BssMI	GATC	2 cut(s)	106, 154
BssNI	GRCGYC	1 cut(s)	175
Bst4CI	ACNGT	1 cut(s)	355
BstACI	GRCGYC	1 cut(s)	175
BstBI	TTCGAA	1 cut(s)	250
BstDEI	CTNAG	3 cut(s)	170, 233, 244
BstH2I	RGCGCY	1 cut(s)	432
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	2 cut(s)	109, 157
BstMBI	GATC	2 cut(s)	106, 154
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	131
BstV1I	GCAGC	3 cut(s)	211, 229, 232
BstV2I	GAAGAC	1 cut(s)	356
BsuRI	GGCC	2 cut(s)	305, 466
BtgZI	GCGATG	1 cut(s)	386
CfoI	GCGC	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	476
CviAII	CATG	1 cut(s)	411
CviQI	GTAC	1 cut(s)	476
DdeI	CTNAG	3 cut(s)	170, 233, 244
DpnI	GATC	2 cut(s)	108, 156
DpnII	GATC	2 cut(s)	106, 154
EaeI	YGGCCR	1 cut(s)	303
Ecl136II	GAGCTC	2 cut(s)	65, 138
Eco147I	AGGCCT	1 cut(s)	466
Eco24I	GRGCYC	2 cut(s)	67, 140
Eco53kI	GAGCTC	2 cut(s)	65, 138
EcoICRI	GAGCTC	2 cut(s)	65, 138
EcoT38I	GRGCYC	2 cut(s)	67, 140
FaeI	CATG	1 cut(s)	414
FaiI	YATR	4 cut(s)	164, 284, 383, 412
FatI	CATG	1 cut(s)	410
Fnu4HI	GCNGC	4 cut(s)	200, 218, 221, 427
FriOI	GRGCYC	2 cut(s)	67, 140
Fsp4HI	GCNGC	4 cut(s)	200, 218, 221, 427
FspBI	CTAG	3 cut(s)	98, 432, 468
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	4 cut(s)	200, 218, 221, 427
HaeII	RGCGCY	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	305, 466
HapII	CCGG	7 cut(s)	119, 132, 295, 306, 337, 344, 362
HhaI	GCGC	1 cut(s)	431
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	414
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HinfI	GANTC	5 cut(s)	58, 146, 309, 340, 401
HpaII	CCGG	7 cut(s)	119, 132, 295, 306, 337, 344, 362
HphI	GGTGA	2 cut(s)	133, 358
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	3 cut(s)	314, 327, 446
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	1 cut(s)	180
HpyAV	CCTTC	1 cut(s)	36
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpyF3I	CTNAG	3 cut(s)	170, 233, 244
HpySE526I	ACGT	1 cut(s)	175
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	1 cut(s)	414
HspAI	GCGC	1 cut(s)	429
Kzo9I	GATC	2 cut(s)	106, 154
LmnI	GCTCC	5 cut(s)	70, 135, 143, 196, 376
LpnPI	CCDG	8 cut(s)	132, 145, 308, 319, 350, 357, 373, 375
Lsp1109I	GCAGC	3 cut(s)	211, 229, 232
MaeI	CTAG	3 cut(s)	98, 432, 468
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	2 cut(s)	108, 156
MboI	GATC	2 cut(s)	106, 154
MboII	GAAGA	3 cut(s)	149, 278, 361
MhlI	GDGCHC	2 cut(s)	67, 140
MluCI	AATT	3 cut(s)	70, 84, 288
MlyI	GAGTC	2 cut(s)	155, 395
MmeI	TCCRAC	3 cut(s)	174, 337, 350
MnlI	CCTC	7 cut(s)	28, 40, 159, 178, 271, 416, 428
MseI	TTAA	2 cut(s)	461, 490
MslI	CAYNNNNRTG	1 cut(s)	39
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	7 cut(s)	119, 132, 295, 306, 337, 344, 362
MspR9I	CCNGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	1 cut(s)	229
NciI	CCSGG	1 cut(s)	133
NdeII	GATC	2 cut(s)	106, 154
NlaIII	CATG	1 cut(s)	414
NlaIV	GGNNCC	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	121
NspV	TTCGAA	1 cut(s)	250
PceI	AGGCCT	1 cut(s)	466
PfeI	GAWTC	3 cut(s)	58, 309, 340
PfoI	TCCNGGA	1 cut(s)	131
PkrI	GCNGC	4 cut(s)	201, 219, 222, 428
PleI	GAGTC	2 cut(s)	154, 395
PpsI	GAGTC	2 cut(s)	154, 395
Psp124BI	GAGCTC	2 cut(s)	67, 140
PspN4I	GGNNCC	1 cut(s)	130
RsaI	GTAC	1 cut(s)	477
RsaNI	GTAC	1 cut(s)	476
RseI	CAYNNNNRTG	1 cut(s)	39
SacI	GAGCTC	2 cut(s)	67, 140
SaqAI	TTAA	2 cut(s)	461, 490
SatI	GCNGC	4 cut(s)	200, 218, 221, 427
Sau3AI	GATC	2 cut(s)	106, 154
SchI	GAGTC	2 cut(s)	155, 395
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	2 cut(s)	67, 140
SetI	ASST	7 cut(s)	16, 67, 140, 178, 204, 381, 483
SfuI	TTCGAA	1 cut(s)	250
SmiMI	CAYNNNNRTG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	403
SmoI	CTYRAG	1 cut(s)	403
Sse9I	AATT	3 cut(s)	70, 84, 288
SseBI	AGGCCT	1 cut(s)	466
SsiI	CCGC	2 cut(s)	223, 426
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	3 cut(s)	98, 432, 468
SstI	GAGCTC	2 cut(s)	67, 140
StuI	AGGCCT	1 cut(s)	466
StyD4I	CCNGG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	2 cut(s)	61, 250
TasI	AATT	3 cut(s)	70, 84, 288
TauI	GCSGC	1 cut(s)	429
TfiI	GAWTC	3 cut(s)	58, 309, 340
Tru1I	TTAA	2 cut(s)	461, 490
Tru9I	TTAA	2 cut(s)	461, 490
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	3 cut(s)	199, 217, 220
Tsp45I	GTSAC	1 cut(s)	121
XspI	CTAG	3 cut(s)	98, 432, 468
ZraI	GACGTC	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.