Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

14469389 .. 14471812

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTGGCACGACATGGTGGAGAAATTCGATCTCACACAACAGTTTCGGATCAACATGATGTATGAGAAACGAGACAAGTGGGCTCAAGCATTTTTCAGGAACCATTTTATGGCTGGCATGAGAAGCACGCAGAGGTGTGAGGGCATGAATAGGTTCATCAAAGACTCTATTGGAAGCGGCATGAAACTAGTCGAAGTCGTTTCGAGGATGGACAGAGCACTCATGAGATTGAGAAACAATCAAGTAAGGGATGACTTTAACACTATGAACTCAACCCCTGTTCTCGAAACTCACCTAAAAGACTTGGAGAATCATGCAGCTTCTATATACACATATGATGTGTTTAAGTGGGTTAGGAAGGAGATCGGAAGGAGAGCCAAGCCACACTACGACGGGGACCAGTACTTTGAAGATGGGCACCGTGTTTACACAATGTCGGCTTACAAGCGGCTCGATTTTGATCACAAGGTAGTTTACTACCATGGGAAAAACACCGAAAGTGCAACGGACCCGATCATGGTATGTTCTTGTAACATGTTTCAATATAGGGGAGTCTCATGTCATCACATGTTCACGGTGATGAAACACGAATACATCAATGAGATTCCAAAGTCACCGATTGTGAAGAGATGGTCGAAGTCTGCTAGAGATGTGTGTTCAATCAAATATCCGGAACAAGATATTTCCAAAGAAGCCCCGGAAGTTAGTAAGTATGGTGCTATGAGTGTTGATTGCAACGAATGTATTTTTATGCTTCCAAGTCGGAAGCGGGTACAACATGTTGAAGAGAGAGATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

266

Amino Acids

31.7

Weight (kDa)

8.94

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	417
AccB7I	CCANNNNNTGG	1 cut(s)	109
AccIII	TCCGGA	1 cut(s)	670
AciI	CCGC	3 cut(s)	177, 448, 769
AclWI	GGATC	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	23
AfaI	GTAC	2 cut(s)	404, 774
AfiI	CCNNNNNNNGG	2 cut(s)	109, 517
AflIII	ACRYGT	3 cut(s)	534, 567, 778
AgsI	TTSAA	4 cut(s)	410, 542, 660, 785
AhlI	ACTAGT	1 cut(s)	187
AluBI	AGCT	1 cut(s)	320
AluI	AGCT	1 cut(s)	320
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	2 cut(s)	66, 559
AlwI	GGATC	1 cut(s)	56
Aor13HI	TCCGGA	1 cut(s)	670
ApeKI	GCWGC	1 cut(s)	317
ApoI	RAATTY	1 cut(s)	23
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
Asp700I	GAANNNNTTC	1 cut(s)	152
AspS9I	GGNCC	2 cut(s)	397, 508
AsuC2I	CCSGG	1 cut(s)	698
AsuHPI	GGTGA	3 cut(s)	284, 589, 606
AvaII	GGWCC	2 cut(s)	397, 508
BaeGI	GKGCMC	1 cut(s)	420
BanI	GGYRCC	1 cut(s)	417
BanII	GRGCYC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	3 cut(s)	202, 407, 624
BclI	TGATCA	1 cut(s)	460
BcnI	CCSGG	1 cut(s)	698
BcoDI	GTCTC	2 cut(s)	66, 559
BcuI	ACTAGT	1 cut(s)	187
BfaI	CTAG	2 cut(s)	188, 645
BisI	GCNGC	3 cut(s)	178, 318, 449
BlsI	GCNGC	3 cut(s)	179, 319, 450
BmcAI	AGTACT	1 cut(s)	404
Bme1390I	CCNGG	1 cut(s)	698
Bme18I	GGWCC	2 cut(s)	397, 508
BmgT120I	GGNCC	2 cut(s)	397, 508
BmiI	GGNNCC	4 cut(s)	101, 398, 419, 510
BmrFI	CCNGG	1 cut(s)	698
BpuEI	CTTGAG	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	698
BsaBI	GATNNNNATC	1 cut(s)	459
BsaJI	CCNNGG	2 cut(s)	481, 696
BsaWI	WCCGGW	1 cut(s)	670
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 517
Bse1I	ACTGG	1 cut(s)	400
Bse8I	GATNNNNATC	1 cut(s)	459
BseAI	TCCGGA	1 cut(s)	670
BseDI	CCNNGG	2 cut(s)	481, 696
BseGI	GGATG	2 cut(s)	213, 256
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	2 cut(s)	109, 517
BseNI	ACTGG	1 cut(s)	400
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	1 cut(s)	329
BshNI	GGYRCC	1 cut(s)	417
BsiHKAI	GWGCWC	1 cut(s)	220
BsiSI	CCGG	2 cut(s)	671, 698
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	2 cut(s)	109, 517
BsmAI	GTCTC	2 cut(s)	66, 559
BsmFI	GGGAC	1 cut(s)	410
Bsp1286I	GDGCHC	3 cut(s)	85, 220, 420
Bsp13I	TCCGGA	1 cut(s)	670
Bsp143I	GATC	5 cut(s)	28, 48, 363, 460, 513
Bsp19I	CCATGG	1 cut(s)	481
BspACI	CCGC	3 cut(s)	177, 448, 769
BspEI	TCCGGA	1 cut(s)	670
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	4 cut(s)	101, 398, 419, 510
BspPI	GGATC	1 cut(s)	56
BspT107I	GGYRCC	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	400
BssECI	CCNNGG	2 cut(s)	481, 696
BssMI	GATC	5 cut(s)	28, 48, 363, 460, 513
BssT1I	CCWWGG	1 cut(s)	481
Bst4CI	ACNGT	3 cut(s)	42, 422, 577
Bst6I	CTCTTC	2 cut(s)	620, 780
BstC8I	GCNNGC	2 cut(s)	115, 128
BstDSI	CCRYGG	1 cut(s)	481
BstF5I	GGATG	2 cut(s)	213, 256
BstKTI	GATC	5 cut(s)	31, 51, 366, 463, 516
BstMAI	GTCTC	2 cut(s)	66, 559
BstMBI	GATC	5 cut(s)	28, 48, 363, 460, 513
BstMWI	GCNNNNNNNGC	1 cut(s)	123
BstNSI	RCATGY	3 cut(s)	538, 571, 782
BstSCI	CCNGG	1 cut(s)	696
BstSLI	GKGCMC	1 cut(s)	420
BstV1I	GCAGC	1 cut(s)	329
BtgI	CCRYGG	1 cut(s)	481
BtsCI	GGATG	2 cut(s)	213, 256
Cac8I	GCNNGC	2 cut(s)	115, 128
CciI	TCATGA	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	397, 508
Csp6I	GTAC	2 cut(s)	403, 773
CviJI	RGCY	8 cut(s)	83, 113, 320, 377, 382, 440, 451, 695
CviKI_1	RGCY	8 cut(s)	83, 113, 320, 377, 382, 440, 451, 695
CviQI	GTAC	2 cut(s)	403, 773
DpnI	GATC	5 cut(s)	30, 50, 365, 462, 515
DpnII	GATC	5 cut(s)	28, 48, 363, 460, 513
Eam1104I	CTCTTC	2 cut(s)	620, 780
EarI	CTCTTC	2 cut(s)	620, 780
Eco130I	CCWWGG	1 cut(s)	481
Eco24I	GRGCYC	1 cut(s)	85
Eco47I	GGWCC	2 cut(s)	397, 508
EcoT14I	CCWWGG	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	481
FaqI	GGGAC	1 cut(s)	410
FauI	CCCGC	1 cut(s)	762
FauNDI	CATATG	1 cut(s)	334
FbaI	TGATCA	1 cut(s)	460
Fnu4HI	GCNGC	3 cut(s)	178, 318, 449
FokI	GGATG	2 cut(s)	220, 263
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	3 cut(s)	178, 318, 449
FspBI	CTAG	2 cut(s)	188, 645
GluI	GCNGC	3 cut(s)	178, 318, 449
HapII	CCGG	2 cut(s)	671, 698
HinfI	GANTC	4 cut(s)	164, 310, 552, 604
HpaII	CCGG	2 cut(s)	671, 698
HphI	GGTGA	3 cut(s)	284, 589, 606
Hpy166II	GTNNAC	3 cut(s)	427, 475, 573
Hpy188I	TCNGA	3 cut(s)	48, 368, 765
Hpy188III	TCNNGA	4 cut(s)	97, 223, 284, 671
Hpy8I	GTNNAC	3 cut(s)	427, 475, 573
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	2 cut(s)	352, 363
HpyCH4III	ACNGT	3 cut(s)	42, 422, 577
HpyCH4V	TGCA	3 cut(s)	317, 503, 735
HpyF10VI	GCNNNNNNNGC	1 cut(s)	123
Kpn2I	TCCGGA	1 cut(s)	670
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	5 cut(s)	28, 48, 363, 460, 513
LpnPI	CCDG	6 cut(s)	82, 99, 291, 413, 684, 711
Lsp1109I	GCAGC	1 cut(s)	329
MaeI	CTAG	2 cut(s)	188, 645
MaeIII	GTNAC	2 cut(s)	530, 612
MalI	GATC	5 cut(s)	30, 50, 365, 462, 515
MboI	GATC	5 cut(s)	28, 48, 363, 460, 513
MboII	GAAGA	3 cut(s)	422, 637, 797
MhlI	GDGCHC	3 cut(s)	85, 220, 420
MluCI	AATT	1 cut(s)	23
MlyI	GAGTC	2 cut(s)	158, 561
MmeI	TCCRAC	1 cut(s)	743
MnlI	CCTC	3 cut(s)	126, 133, 198
MroI	TCCGGA	1 cut(s)	670
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	2 cut(s)	258, 345
MslI	CAYNNNNRTG	1 cut(s)	578
MspI	CCGG	2 cut(s)	671, 698
MspR9I	CCNGG	1 cut(s)	698
MwoI	GCNNNNNNNGC	1 cut(s)	123
NciI	CCSGG	1 cut(s)	698
NcoI	CCATGG	1 cut(s)	481
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	5 cut(s)	28, 48, 363, 460, 513
NlaIV	GGNNCC	4 cut(s)	101, 398, 419, 510
NmuCI	GTSAC	1 cut(s)	612
NspI	RCATGY	3 cut(s)	538, 571, 782
PagI	TCATGA	1 cut(s)	222
PciI	ACATGT	3 cut(s)	534, 567, 778
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	310, 604
PflMI	CCANNNNNTGG	1 cut(s)	109
PkrI	GCNGC	3 cut(s)	179, 319, 450
PleI	GAGTC	2 cut(s)	158, 560
PpsI	GAGTC	2 cut(s)	158, 560
PscI	ACATGT	3 cut(s)	534, 567, 778
PspN4I	GGNNCC	4 cut(s)	101, 398, 419, 510
PspPI	GGNCC	2 cut(s)	397, 508
RsaI	GTAC	2 cut(s)	404, 774
RsaNI	GTAC	2 cut(s)	403, 773
RseI	CAYNNNNRTG	1 cut(s)	578
SaqAI	TTAA	2 cut(s)	258, 345
SatI	GCNGC	3 cut(s)	178, 318, 449
Sau3AI	GATC	5 cut(s)	28, 48, 363, 460, 513
Sau96I	GGNCC	2 cut(s)	397, 508
ScaI	AGTACT	1 cut(s)	404
SchI	GAGTC	2 cut(s)	158, 561
ScrFI	CCNGG	1 cut(s)	698
SduI	GDGCHC	3 cut(s)	85, 220, 420
SetI	ASST	5 cut(s)	137, 155, 297, 322, 471
SinI	GGWCC	2 cut(s)	397, 508
SmiMI	CAYNNNNRTG	1 cut(s)	578
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
SpeI	ACTAGT	1 cut(s)	187
Sse9I	AATT	1 cut(s)	23
SsiI	CCGC	3 cut(s)	177, 448, 769
SspMI	CTAG	2 cut(s)	188, 645
StyD4I	CCNGG	1 cut(s)	696
StyI	CCWWGG	1 cut(s)	481
TaaI	ACNGT	3 cut(s)	42, 422, 577
TaqI	TCGA	6 cut(s)	27, 192, 203, 285, 453, 635
TasI	AATT	1 cut(s)	23
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	2 cut(s)	180, 451
TfiI	GAWTC	2 cut(s)	310, 604
Tru1I	TTAA	2 cut(s)	258, 345
Tru9I	TTAA	2 cut(s)	258, 345
TseFI	GTSAC	1 cut(s)	612
TseI	GCWGC	1 cut(s)	317
Tsp45I	GTSAC	1 cut(s)	612
TspDTI	ATGAA	5 cut(s)	145, 161, 197, 281, 596
TspGWI	ACGGA	1 cut(s)	521
Van91I	CCANNNNNTGG	1 cut(s)	109
VpaK11BI	GGWCC	2 cut(s)	397, 508
XapI	RAATTY	1 cut(s)	23
XceI	RCATGY	3 cut(s)	538, 571, 782
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XmnI	GAANNNNTTC	1 cut(s)	152
XspI	CTAG	2 cut(s)	188, 645
ZrmI	AGTACT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.