Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003776.1

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

128588 .. 129157

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003776.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgaacgctctggcagcacaagacccatacttctactgcaggttcaatgtagatatagaagacagcacatacaaaaccaatgttgacaaaaagatattggttttgtttgttgggtcaaacaatcatcggggaaatattttgtttggtgctgcacttcttatcgatgaaatggtggagacatacacttggctattgcgttcatttttggatgcaatgaatgggaagatgccaatagctgtacttacagatggagatgaagccatgcatagtgcaattgaagacgtgatgccacaagcaaagcaccatctttgtgcttggtacctttcccaaaaagccaacactaatttgaagtgcgacgaaaagttgaaagcttctaacaggtacatgagaaaattccaaactgtggagcagttcgaagtaatatggcacgacatggtggagaaattcgatctccacaacagtttctggatcaacatgatgtatgagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

163

Amino Acids

19.09

Weight (kDa)

5.64

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	30
Acc65I	GGTACC	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	318
AccB7I	CCANNNNNTGG	1 cut(s)	403
AclWI	GGATC	1 cut(s)	476
AcsI	RAATTY	2 cut(s)	392, 443
AfaI	GTAC	3 cut(s)	240, 320, 383
AfiI	CCNNNNNNNGG	1 cut(s)	403
AgsI	TTSAA	4 cut(s)	46, 278, 349, 367
AjiI	CACGTC	1 cut(s)	283
AluBI	AGCT	2 cut(s)	236, 371
AluI	AGCT	2 cut(s)	236, 371
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	476
AlwNI	CAGNNNCTG	1 cut(s)	465
ApeKI	GCWGC	2 cut(s)	14, 149
ApoI	RAATTY	2 cut(s)	392, 443
Asp718I	GGTACC	1 cut(s)	318
AsuII	TTCGAA	1 cut(s)	414
BanI	GGYRCC	1 cut(s)	318
BbsI	GAAGAC	2 cut(s)	66, 285
BbvI	GCAGC	2 cut(s)	26, 136
BccI	CCATC	2 cut(s)	242, 312
BcoDI	GTCTC	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	37
BfuAI	ACCTGC	1 cut(s)	30
BisI	GCNGC	2 cut(s)	15, 150
BlsI	GCNGC	2 cut(s)	16, 151
BmgBI	CACGTC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	320
BmsI	GCATC	3 cut(s)	199, 216, 276
BpiI	GAAGAC	2 cut(s)	66, 285
Bpu14I	TTCGAA	1 cut(s)	414
Bsa29I	ATCGAT	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse3DI	GCAATG	1 cut(s)	219
BseCI	ATCGAT	1 cut(s)	162
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMI	GCAATG	1 cut(s)	219
BseXI	GCAGC	2 cut(s)	26, 136
BsgI	GTGCAG	1 cut(s)	135
BshNI	GGYRCC	1 cut(s)	318
BshVI	ATCGAT	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	414
Bsp143I	GATC	2 cut(s)	448, 468
BspDI	ATCGAT	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	320
BspMAI	CTGCAG	1 cut(s)	41
BspMI	ACCTGC	1 cut(s)	30
BspPI	GGATC	1 cut(s)	476
BspT104I	TTCGAA	1 cut(s)	414
BspT107I	GGYRCC	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	219
BssMI	GATC	2 cut(s)	448, 468
Bst4CI	ACNGT	2 cut(s)	403, 461
BstBI	TTCGAA	1 cut(s)	414
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	2 cut(s)	451, 471
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	2 cut(s)	448, 468
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	37
BstV1I	GCAGC	2 cut(s)	26, 136
BstV2I	GAAGAC	2 cut(s)	66, 285
Bsu15I	ATCGAT	1 cut(s)	162
BsuTUI	ATCGAT	1 cut(s)	162
BtrI	CACGTC	1 cut(s)	283
BtsCI	GGATG	1 cut(s)	214
BveI	ACCTGC	1 cut(s)	30
CaiI	CAGNNNCTG	1 cut(s)	465
ClaI	ATCGAT	1 cut(s)	162
Csp6I	GTAC	3 cut(s)	239, 319, 382
CviAII	CATG	4 cut(s)	262, 385, 433, 475
CviJI	RGCY	5 cut(s)	190, 236, 260, 335, 371
CviKI_1	RGCY	5 cut(s)	190, 236, 260, 335, 371
CviQI	GTAC	3 cut(s)	239, 319, 382
DpnI	GATC	2 cut(s)	450, 470
DpnII	GATC	2 cut(s)	448, 468
EcoT22I	ATGCAT	1 cut(s)	267
FaeI	CATG	4 cut(s)	265, 388, 436, 478
FatI	CATG	4 cut(s)	261, 384, 432, 474
Fnu4HI	GCNGC	2 cut(s)	15, 150
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	2 cut(s)	15, 150
GluI	GCNGC	2 cut(s)	15, 150
Hin1II	CATG	4 cut(s)	265, 388, 436, 478
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	369
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188III	TCNNGA	1 cut(s)	466
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	1 cut(s)	359
HpyCH4III	ACNGT	2 cut(s)	403, 461
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	5 cut(s)	39, 152, 212, 265, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	4 cut(s)	265, 388, 436, 478
KpnI	GGTACC	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	448, 468
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	3 cut(s)	25, 364, 451
Lsp1109I	GCAGC	2 cut(s)	26, 136
LweI	GCATC	3 cut(s)	199, 216, 276
MaeII	ACGT	1 cut(s)	282
MalI	GATC	2 cut(s)	450, 470
MboI	GATC	2 cut(s)	448, 468
MboII	GAAGA	3 cut(s)	71, 235, 290
MfeI	CAATTG	1 cut(s)	273
MluCI	AATT	4 cut(s)	273, 343, 392, 443
Mph1103I	ATGCAT	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	309
MunI	CAATTG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	2 cut(s)	448, 468
NlaIII	CATG	4 cut(s)	265, 388, 436, 478
NlaIV	GGNNCC	1 cut(s)	320
NsiI	ATGCAT	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	414
PflMI	CCANNNNNTGG	1 cut(s)	403
PkrI	GCNGC	2 cut(s)	16, 151
PspN4I	GGNNCC	1 cut(s)	320
PstI	CTGCAG	1 cut(s)	41
PstNI	CAGNNNCTG	1 cut(s)	465
RsaI	GTAC	3 cut(s)	240, 320, 383
RsaNI	GTAC	3 cut(s)	239, 319, 382
RseI	CAYNNNNRTG	1 cut(s)	309
SatI	GCNGC	2 cut(s)	15, 150
Sau3AI	GATC	2 cut(s)	448, 468
SetI	ASST	6 cut(s)	44, 238, 285, 324, 373, 383
SfaNI	GCATC	3 cut(s)	199, 216, 276
SfcI	CTRYAG	1 cut(s)	37
SfuI	TTCGAA	1 cut(s)	414
SmiMI	CAYNNNNRTG	1 cut(s)	309
Sse9I	AATT	4 cut(s)	273, 343, 392, 443
SspI	AATATT	1 cut(s)	136
TaaI	ACNGT	2 cut(s)	403, 461
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	3 cut(s)	162, 414, 447
TasI	AATT	4 cut(s)	273, 343, 392, 443
TatI	WGTACW	1 cut(s)	238
TseI	GCWGC	2 cut(s)	14, 149
TspDTI	ATGAA	5 cut(s)	17, 180, 189, 230, 270
Van91I	CCANNNNNTGG	1 cut(s)	403
XapI	RAATTY	2 cut(s)	392, 443
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.