Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Reverse (-)

27702936 .. 27703784

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26211.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAAAACGGGCACACCAGATTTCAATAGAAGATTCAGTTTATCAGCCCGATCCCATCTACCTCAAATTATCATCCGGCGATATCTTCTTCCTCCTCCGGTCTCAGTGGTGGACCACCGCCTTCCGCTTCCTCTCCTCGTCGAGCTGATCTCTTCATGGTCTACAGTGAGAACCACAAACATGAGTCCAGGATATTTTTCAGTGCCAGAAGTCGGCTTCGGAGGGGATGGGTACTCCGAGGTTAAGCATGTTGATGCTAGAGCAATCCCAGGATGGGTGACCTCCTGGGAAGCTGCTCCTGAGCTGCCGGAAACAAAACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

11.93

Weight (kDa)

8.16

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	161
AciI	CCGC	2 cut(s)	118, 125
AclWI	GGATC	1 cut(s)	45
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	2 cut(s)	212, 274
AgsI	TTSAA	1 cut(s)	25
AjnI	CCWGG	3 cut(s)	187, 268, 284
AluBI	AGCT	3 cut(s)	145, 293, 304
AluI	AGCT	3 cut(s)	145, 293, 304
Alw26I	GTCTC	1 cut(s)	106
AlwI	GGATC	1 cut(s)	45
ApeKI	GCWGC	2 cut(s)	293, 304
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	112
BaeGI	GKGCMC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	280, 291
BccI	CCATC	3 cut(s)	63, 221, 267
BciT130I	CCWGG	3 cut(s)	189, 270, 286
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	2 cut(s)	294, 305
BlsI	GCNGC	2 cut(s)	295, 306
Bme1390I	CCNGG	3 cut(s)	189, 270, 286
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	112
BmrFI	CCNGG	3 cut(s)	189, 270, 286
BmsI	GCATC	1 cut(s)	244
BplI	GAGNNNNNCTC	2 cut(s)	134, 166
Bpu10I	CCTNAGC	1 cut(s)	300
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	3 cut(s)	237, 268, 285
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 274
BseBI	CCWGG	3 cut(s)	189, 270, 286
BseDI	CCNNGG	3 cut(s)	237, 268, 285
BseGI	GGATG	3 cut(s)	72, 232, 278
BseLI	CCNNNNNNNGG	2 cut(s)	212, 274
BseMII	CTCAG	2 cut(s)	117, 291
BseRI	GAGGAG	2 cut(s)	84, 125
BseSI	GKGCMC	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	280, 291
BsiSI	CCGG	3 cut(s)	76, 98, 308
BslI	CCNNNNNNNGG	2 cut(s)	212, 274
BsmAI	GTCTC	1 cut(s)	106
Bso31I	GGTCTC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	2 cut(s)	50, 147
BspACI	CCGC	2 cut(s)	118, 125
BspCNI	CTCAG	2 cut(s)	116, 292
BspPI	GGATC	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	106
BssECI	CCNNGG	3 cut(s)	237, 268, 285
BssMI	GATC	2 cut(s)	50, 147
Bst2UI	CCWGG	3 cut(s)	189, 270, 286
Bst4CI	ACNGT	2 cut(s)	166, 321
Bst6I	CTCTTC	1 cut(s)	157
BstDEI	CTNAG	2 cut(s)	103, 300
BstEII	GGTNACC	1 cut(s)	277
BstF5I	GGATG	3 cut(s)	72, 232, 278
BstKTI	GATC	2 cut(s)	53, 150
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	2 cut(s)	50, 147
BstNI	CCWGG	3 cut(s)	189, 270, 286
BstNSI	RCATGY	1 cut(s)	251
BstPI	GGTNACC	1 cut(s)	277
BstSCI	CCNGG	3 cut(s)	187, 268, 284
BstSFI	CTRYAG	1 cut(s)	162
BstSLI	GKGCMC	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	280, 291
BtsCI	GGATG	3 cut(s)	72, 232, 278
BtsIMutI	CAGTG	3 cut(s)	111, 171, 207
Cfr13I	GGNCC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	3 cut(s)	156, 181, 248
CviJI	RGCY	5 cut(s)	47, 145, 216, 293, 304
CviKI_1	RGCY	5 cut(s)	47, 145, 216, 293, 304
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	2 cut(s)	103, 300
DpnI	GATC	2 cut(s)	52, 149
DpnII	GATC	2 cut(s)	50, 147
Eam1104I	CTCTTC	1 cut(s)	157
EarI	CTCTTC	1 cut(s)	157
Eco31I	GGTCTC	1 cut(s)	106
Eco32I	GATATC	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	112
Eco91I	GGTNACC	1 cut(s)	277
EcoO65I	GGTNACC	1 cut(s)	277
EcoRII	CCWGG	3 cut(s)	187, 268, 284
EcoRV	GATATC	1 cut(s)	83
FaeI	CATG	3 cut(s)	159, 184, 251
FaiI	YATR	3 cut(s)	157, 182, 249
FatI	CATG	3 cut(s)	155, 180, 247
FblI	GTMKAC	1 cut(s)	161
Fnu4HI	GCNGC	2 cut(s)	294, 305
FokI	GGATG	3 cut(s)	59, 239, 285
Fsp4HI	GCNGC	2 cut(s)	294, 305
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	2 cut(s)	294, 305
HapII	CCGG	3 cut(s)	76, 98, 308
Hin1II	CATG	3 cut(s)	159, 184, 251
HinfI	GANTC	2 cut(s)	33, 184
HpaII	CCGG	3 cut(s)	76, 98, 308
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	112, 162
Hpy188I	TCNGA	2 cut(s)	221, 238
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	2 cut(s)	112, 162
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	131
HpyCH4III	ACNGT	2 cut(s)	166, 321
HpyF3I	CTNAG	2 cut(s)	103, 300
Hsp92II	CATG	3 cut(s)	159, 184, 251
Kzo9I	GATC	2 cut(s)	50, 147
LmnI	GCTCC	1 cut(s)	301
Lsp1109I	GCAGC	2 cut(s)	280, 291
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	258
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	2 cut(s)	52, 149
MboI	GATC	2 cut(s)	50, 147
MboII	GAAGA	4 cut(s)	42, 77, 80, 144
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	193
MnlI	CCTC	8 cut(s)	72, 102, 105, 141, 146, 215, 232, 292
MseI	TTAA	1 cut(s)	243
MslI	CAYNNNNRTG	2 cut(s)	179, 252
MspI	CCGG	3 cut(s)	76, 98, 308
MspR9I	CCNGG	3 cut(s)	189, 270, 286
MvaI	CCWGG	3 cut(s)	189, 270, 286
NdeII	GATC	2 cut(s)	50, 147
NlaIII	CATG	3 cut(s)	159, 184, 251
NmuCI	GTSAC	1 cut(s)	277
NspI	RCATGY	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	33
PfoI	TCCNGGA	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	295, 306
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Psp6I	CCWGG	3 cut(s)	187, 268, 284
PspEI	GGTNACC	1 cut(s)	277
PspGI	CCWGG	3 cut(s)	187, 268, 284
PspPI	GGNCC	1 cut(s)	112
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
RseI	CAYNNNNRTG	2 cut(s)	179, 252
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	2 cut(s)	294, 305
Sau3AI	GATC	2 cut(s)	50, 147
Sau96I	GGNCC	1 cut(s)	112
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	3 cut(s)	189, 270, 286
SduI	GDGCHC	1 cut(s)	14
SetI	ASST	6 cut(s)	64, 147, 243, 284, 295, 306
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	112
SmiMI	CAYNNNNRTG	2 cut(s)	179, 252
Sse9I	AATT	1 cut(s)	66
SsiI	CCGC	2 cut(s)	118, 125
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	3 cut(s)	187, 268, 284
TaaI	ACNGT	2 cut(s)	166, 321
TaqI	TCGA	1 cut(s)	141
TasI	AATT	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	33
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	3 cut(s)	111, 171, 207
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	2 cut(s)	293, 304
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	17, 144
TspRI	CASTG	3 cut(s)	111, 171, 207
VpaK11BI	GGWCC	1 cut(s)	112
XceI	RCATGY	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	161
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.