Rmu_sc0004702.1_g000009

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004702.1
OG0000607
Physical Location & Seq
Forward (+)
36466 .. 37044
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004702.1_g000009.1.cds

Sequence Viewer

Length: 579 bp
atgaacgctctggcagcacaagacccatacttctactgcaggttcaatgtagatatagaagacaggttagcaaacatgttttggcgagatgggcatgcatttgttgattttatgtgttacgaggatgtgctgatctttgatagcacatacaaaaccaatgtttacaaaaagccattagttttgtttgttgggtcaaacaatcatcggggaagtattttgtttggtgctgctcttcttgttgatgaaacagtggagacatacacttggctgttgcgttcatttttggatgcaatgaataggaagatgccaatagttgtactcacagatggagatgaagccatgcgtagtgcaattgaagacgtgatgccacaagcaaagcacagtctttgtgcttggcacctttccaaaaacgccaacactaatttgaagtgcgacgaaaagttgaaagcttttaacaggtgcatgagaaaattccaaactgtggagcagttcgaagtaatgtggcacgacatagtggagaaattcgttctccacaacagtttctggatcaacatgatgtatgagaaacgagacaattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

192

Amino Acids

22.67

Weight (kDa)

5.86

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 30
AccB1I GGYRCC 1 cut(s) 396
AccB7I CCANNNNNTGG 1 cut(s) 481
AclWI GGATC 1 cut(s) 554
AcsI RAATTY 2 cut(s) 470, 521
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 481
AflIII ACRYGT 1 cut(s) 75
AgsI TTSAA 4 cut(s) 46, 356, 427, 445
AjiI CACGTC 1 cut(s) 361
AluBI AGCT 1 cut(s) 449
AluI AGCT 1 cut(s) 449
Alw26I GTCTC 2 cut(s) 248, 564
AlwI GGATC 1 cut(s) 554
AlwNI CAGNNNCTG 1 cut(s) 543
ApeKI GCWGC 2 cut(s) 14, 227
ApoI RAATTY 2 cut(s) 470, 521
AsuII TTCGAA 1 cut(s) 492
BanI GGYRCC 1 cut(s) 396
BbsI GAAGAC 2 cut(s) 66, 363
BbvI GCAGC 2 cut(s) 26, 214
BccI CCATC 2 cut(s) 83, 320
BcoDI GTCTC 2 cut(s) 248, 564
BfmI CTRYAG 1 cut(s) 37
BfuAI ACCTGC 1 cut(s) 30
BisI GCNGC 2 cut(s) 15, 228
BlsI GCNGC 2 cut(s) 16, 229
BmgBI CACGTC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 398
BmsI GCATC 3 cut(s) 277, 294, 354
BpiI GAAGAC 2 cut(s) 66, 363
Bpu14I TTCGAA 1 cut(s) 492
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse3DI GCAATG 1 cut(s) 297
BseGI GGATG 2 cut(s) 130, 292
BseLI CCNNNNNNNGG 1 cut(s) 481
BseMI GCAATG 1 cut(s) 297
BseXI GCAGC 2 cut(s) 26, 214
BshNI GGYRCC 1 cut(s) 396
BslI CCNNNNNNNGG 1 cut(s) 481
BsmAI GTCTC 2 cut(s) 248, 564
Bsp119I TTCGAA 1 cut(s) 492
Bsp143I GATC 2 cut(s) 132, 546
BspLI GGNNCC 1 cut(s) 398
BspMAI CTGCAG 1 cut(s) 41
BspMI ACCTGC 1 cut(s) 30
BspPI GGATC 1 cut(s) 554
BspQI GCTCTTC 1 cut(s) 237
BspT104I TTCGAA 1 cut(s) 492
BspT107I GGYRCC 1 cut(s) 396
BsrDI GCAATG 1 cut(s) 297
BssMI GATC 2 cut(s) 132, 546
Bst4CI ACNGT 4 cut(s) 250, 383, 481, 539
Bst6I CTCTTC 1 cut(s) 237
BstBI TTCGAA 1 cut(s) 492
BstC8I GCNNGC 1 cut(s) 96
BstF5I GGATG 2 cut(s) 130, 292
BstKTI GATC 2 cut(s) 135, 549
BstMAI GTCTC 2 cut(s) 248, 564
BstMBI GATC 2 cut(s) 132, 546
BstMWI GCNNNNNNNGC 2 cut(s) 14, 91
BstNSI RCATGY 2 cut(s) 79, 98
BstSFI CTRYAG 1 cut(s) 37
BstV1I GCAGC 2 cut(s) 26, 214
BstV2I GAAGAC 2 cut(s) 66, 363
BtrI CACGTC 1 cut(s) 361
BtsCI GGATG 2 cut(s) 130, 292
BtsIMutI CAGTG 1 cut(s) 255
BveI ACCTGC 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 96
CaiI CAGNNNCTG 1 cut(s) 543
Csp6I GTAC 1 cut(s) 317
CviAII CATG 5 cut(s) 76, 95, 340, 463, 553
CviJI RGCY 4 cut(s) 172, 268, 338, 449
CviKI_1 RGCY 4 cut(s) 172, 268, 338, 449
CviQI GTAC 1 cut(s) 317
DpnI GATC 2 cut(s) 134, 548
DpnII GATC 2 cut(s) 132, 546
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
EcoT22I ATGCAT 1 cut(s) 100
FaeI CATG 5 cut(s) 79, 98, 343, 466, 556
FatI CATG 5 cut(s) 75, 94, 339, 462, 552
Fnu4HI GCNGC 2 cut(s) 15, 228
FokI GGATG 2 cut(s) 137, 299
Fsp4HI GCNGC 2 cut(s) 15, 228
GluI GCNGC 2 cut(s) 15, 228
Hin1II CATG 5 cut(s) 79, 98, 343, 466, 556
HindIII AAGCTT 1 cut(s) 447
Hpy166II GTNNAC 1 cut(s) 163
Hpy188III TCNNGA 1 cut(s) 544
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 1 cut(s) 437
HpyCH4III ACNGT 4 cut(s) 250, 383, 481, 539
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 5 cut(s) 39, 98, 290, 350, 462
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 91
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 5 cut(s) 79, 98, 343, 466, 556
Kzo9I GATC 2 cut(s) 132, 546
LguI GCTCTTC 1 cut(s) 237
LmnI GCTCC 1 cut(s) 484
LpnPI CCDG 4 cut(s) 25, 49, 442, 529
Lsp1109I GCAGC 2 cut(s) 26, 214
LweI GCATC 3 cut(s) 277, 294, 354
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 116
MalI GATC 2 cut(s) 134, 548
MboI GATC 2 cut(s) 132, 546
MboII GAAGA 4 cut(s) 71, 224, 313, 368
MfeI CAATTG 1 cut(s) 351
MluCI AATT 5 cut(s) 351, 421, 470, 521, 574
MnlI CCTC 1 cut(s) 115
Mph1103I ATGCAT 1 cut(s) 100
MseI TTAA 1 cut(s) 453
MunI CAATTG 1 cut(s) 351
MwoI GCNNNNNNNGC 2 cut(s) 14, 91
NdeII GATC 2 cut(s) 132, 546
NlaIII CATG 5 cut(s) 79, 98, 343, 466, 556
NlaIV GGNNCC 1 cut(s) 398
NsiI ATGCAT 1 cut(s) 100
NspI RCATGY 2 cut(s) 79, 98
NspV TTCGAA 1 cut(s) 492
PaeI GCATGC 1 cut(s) 98
PciI ACATGT 1 cut(s) 75
PciSI GCTCTTC 1 cut(s) 237
PflMI CCANNNNNTGG 1 cut(s) 481
PkrI GCNGC 2 cut(s) 16, 229
PscI ACATGT 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 398
PstI CTGCAG 1 cut(s) 41
PstNI CAGNNNCTG 1 cut(s) 543
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SapI GCTCTTC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 2 cut(s) 15, 228
Sau3AI GATC 2 cut(s) 132, 546
SetI ASST 6 cut(s) 44, 68, 363, 402, 451, 461
SfaNI GCATC 3 cut(s) 277, 294, 354
SfcI CTRYAG 1 cut(s) 37
SfuI TTCGAA 1 cut(s) 492
SphI GCATGC 1 cut(s) 98
Sse9I AATT 5 cut(s) 351, 421, 470, 521, 574
TaaI ACNGT 4 cut(s) 250, 383, 481, 539
TaiI ACGT 1 cut(s) 363
TaqI TCGA 1 cut(s) 492
TasI AATT 5 cut(s) 351, 421, 470, 521, 574
TatI WGTACW 1 cut(s) 316
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TscAI CASTG 1 cut(s) 255
TseI GCWGC 2 cut(s) 14, 227
TspDTI ATGAA 5 cut(s) 17, 258, 267, 308, 348
TspRI CASTG 1 cut(s) 255
Van91I CCANNNNNTGG 1 cut(s) 481
XapI RAATTY 2 cut(s) 470, 521
XceI RCATGY 2 cut(s) 79, 98
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.