FvH4_5g18831

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000607
Physical Location & Seq
Forward (+)
10817541 .. 10818468
928 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18831.t1

Sequence Viewer

Length: 258 bp
ATGTTGTTCGAGTATAGGACTAATAGGAGTGCGTGCATCGGCCCATGTAAACCCGGGGTTGGATTGTTGTCGGTGAGCCGTGGCTTTGTTGGTCAAAGTGTAATATTCCACATCGGCCAAACGGAGAGGGGTTATGTGCTGTATATCGGCTTCGGAGGGGATGGGTACTCCGAGGTTAAGCATGTTGATGCTAGAGCAATCCCAGGATGGGTGACCTACTGGGAAGCTGTTCCTGAGCTGCCGGAAACAAAACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.36

Weight (kDa)

6.71

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 115
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 2 cut(s) 59, 208
AjnI CCWGG 1 cut(s) 202
AluBI AGCT 2 cut(s) 227, 238
AluI AGCT 2 cut(s) 227, 238
Ama87I CYCGRG 1 cut(s) 53
AoxI GGCC 2 cut(s) 40, 115
ApeKI GCWGC 1 cut(s) 238
Asp700I GAANNNNTTC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 41
AsuC2I CCSGG 2 cut(s) 54, 55
AsuHPI GGTGA 2 cut(s) 85, 223
AvaI CYCGRG 1 cut(s) 53
BarI GAAGNNNNNNTAC 2 cut(s) 134, 166
BbvI GCAGC 1 cut(s) 225
BccI CCATC 2 cut(s) 155, 201
BceAI ACGGC 1 cut(s) 63
BciT130I CCWGG 1 cut(s) 204
BcnI CCSGG 2 cut(s) 54, 55
BfaI CTAG 1 cut(s) 192
BisI GCNGC 1 cut(s) 239
BlsI GCNGC 1 cut(s) 240
Bme1390I CCNGG 3 cut(s) 54, 55, 204
BmeT110I CYCGRG 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 41
BmrFI CCNGG 3 cut(s) 54, 55, 204
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 2 cut(s) 45, 178
BmuI ACTGGG 1 cut(s) 229
Bpu10I CCTNAGC 1 cut(s) 234
BpuMI CCSGG 2 cut(s) 54, 55
BsaJI CCNNGG 5 cut(s) 53, 54, 79, 171, 202
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 208
Bse1I ACTGG 1 cut(s) 224
BseBI CCWGG 1 cut(s) 204
BseDI CCNNGG 5 cut(s) 53, 54, 79, 171, 202
BseGI GGATG 2 cut(s) 166, 212
BseLI CCNNNNNNNGG 2 cut(s) 59, 208
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 225
BshFI GGCC 2 cut(s) 42, 117
BsiHKCI CYCGRG 1 cut(s) 53
BsiSI CCGG 2 cut(s) 54, 242
BslI CCNNNNNNNGG 2 cut(s) 59, 208
BsnI GGCC 2 cut(s) 42, 117
BsoBI CYCGRG 1 cut(s) 53
BspANI GGCC 2 cut(s) 42, 117
BspCNI CTCAG 1 cut(s) 226
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 5 cut(s) 53, 54, 79, 171, 202
Bst2UI CCWGG 1 cut(s) 204
Bst4CI ACNGT 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 234
BstDSI CCRYGG 1 cut(s) 79
BstEII GGTNACC 1 cut(s) 211
BstF5I GGATG 2 cut(s) 166, 212
BstNI CCWGG 1 cut(s) 204
BstNSI RCATGY 1 cut(s) 185
BstPI GGTNACC 1 cut(s) 211
BstSCI CCNGG 3 cut(s) 52, 53, 202
BstV1I GCAGC 1 cut(s) 225
BsuRI GGCC 2 cut(s) 42, 117
BtgI CCRYGG 1 cut(s) 79
BtsCI GGATG 2 cut(s) 166, 212
Cac8I GCNNGC 1 cut(s) 34
Cfr13I GGNCC 1 cut(s) 41
Cfr9I CCCGGG 1 cut(s) 53
Csp6I GTAC 1 cut(s) 166
CviAII CATG 2 cut(s) 45, 182
CviJI RGCY 7 cut(s) 42, 78, 84, 117, 150, 227, 238
CviKI_1 RGCY 7 cut(s) 42, 78, 84, 117, 150, 227, 238
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 1 cut(s) 234
EaeI YGGCCR 1 cut(s) 115
Eco88I CYCGRG 1 cut(s) 53
Eco91I GGTNACC 1 cut(s) 211
EcoO65I GGTNACC 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 202
FaeI CATG 2 cut(s) 48, 185
FaiI YATR 5 cut(s) 15, 46, 135, 144, 183
FatI CATG 2 cut(s) 44, 181
Fnu4HI GCNGC 1 cut(s) 239
FokI GGATG 2 cut(s) 173, 219
Fsp4HI GCNGC 1 cut(s) 239
FspBI CTAG 1 cut(s) 192
GluI GCNGC 1 cut(s) 239
HaeIII GGCC 2 cut(s) 42, 117
HapII CCGG 2 cut(s) 54, 242
Hin1II CATG 2 cut(s) 48, 185
HpaII CCGG 2 cut(s) 54, 242
HphI GGTGA 2 cut(s) 85, 223
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 2 cut(s) 155, 172
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4V TGCA 1 cut(s) 36
HpyF3I CTNAG 1 cut(s) 234
Hsp92II CATG 2 cut(s) 48, 185
LpnPI CCDG 5 cut(s) 67, 189, 205, 216, 246
Lsp1109I GCAGC 1 cut(s) 225
LweI GCATC 2 cut(s) 45, 178
MaeI CTAG 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 211
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 3 cut(s) 120, 149, 166
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 186
MspI CCGG 2 cut(s) 54, 242
MspR9I CCNGG 3 cut(s) 54, 55, 204
MvaI CCWGG 1 cut(s) 204
NciI CCSGG 2 cut(s) 54, 55
NlaIII CATG 2 cut(s) 48, 185
NmuCI GTSAC 1 cut(s) 211
NspI RCATGY 1 cut(s) 185
PdmI GAANNNNTTC 1 cut(s) 228
PkrI GCNGC 1 cut(s) 240
Psp6I CCWGG 1 cut(s) 202
PspEI GGTNACC 1 cut(s) 211
PspGI CCWGG 1 cut(s) 202
PspPI GGNCC 1 cut(s) 41
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 186
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 1 cut(s) 239
Sau96I GGNCC 1 cut(s) 41
ScrFI CCNGG 3 cut(s) 54, 55, 204
SetI ASST 4 cut(s) 177, 218, 229, 240
SfaNI GCATC 2 cut(s) 45, 178
SmaI CCCGGG 1 cut(s) 55
SmiMI CAYNNNNRTG 1 cut(s) 186
SspI AATATT 1 cut(s) 105
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 3 cut(s) 52, 53, 202
TaaI ACNGT 1 cut(s) 255
TaqI TCGA 1 cut(s) 9
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 211
TspGWI ACGGA 1 cut(s) 137
TspMI CCCGGG 1 cut(s) 53
XceI RCATGY 1 cut(s) 185
XmaI CCCGGG 1 cut(s) 53
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.