Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

21583269 .. 21584406

Gene Structure 1138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g30671.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGCCGGAAGCAAGGCACCGTCTCTGTATTTGGCACATAGGTCAAAATGCTAATGGCCACTTAAAGTCAGCGGAAAAGTTGAAGGCTTTCAACAGGTGCATTAGGAAGTATCAAACGGTTGAGCAATTTGATAGGTTGTGGCAGGATATGCTAGACGAATTTGATCTCCACGACAATGATTGGATCAACAGTATGTATGAAAAGAGAGACAAGTTTTGTCAAGCATTCTTCCGTGATATATTTATGGCCGGCATGAGAAGCACACAAAGGTGTGAGGGAATGAATAAAGACTTCAAGCTTGTCCTATCGAAAAGCAAAACCCTTGTGCAGGTTATTTCGTTGGTGGACCGAACACTTATGAGAATTAGAAACAATCAAGAAAGGGATGATTTCAACACTATGAATTCATTTCATAGTGCGAAAACTCACTTGGAAGATTTGGAGAAACAAGCATCTTCTGTATTCACACACGACGTGTTTAAGTGGAATTTTAGGGAGATCATGAAAGAGGCTCATATCACACTAAAGCAAGGAACAGAATGTCATGAAGATGGTTCCCGGGTTTACAAGGGGAGTGCCGTGTCGTCACATGTTCTCGGTGATGAAAAACGAAAACATCTTTCATCTTCACAAGTCACTGATAGTGAAGAGGTGGTCGAGGACGCAAAAAGTGTTTGTGAAATCCCATATCCAGACAAAGAAATGCCCCAAGAAGCCGTGCAAGTGAGCAGCAAGTATGGTGCTTTGACTGCTGATTGCAATCGGTTGTGCTTTTATGCTTCAAAGACGCAAGAAGGCTACAACATGTTGAAGATGAAGATCGATAGACTAGCAGCAATTATGGAAGGTTTGAACACAAGTACCATTTTGATTTCTAGAAAGTCTACTTCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

299

Amino Acids

34.6

Weight (kDa)

7.62

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	319
AccB1I	GGYRCC	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	884
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	2 cut(s)	55, 246
AcsI	RAATTY	3 cut(s)	158, 403, 487
AdeI	CACNNNGTG	1 cut(s)	475
AfaI	GTAC	1 cut(s)	862
AfiI	CCNNNNNNNGG	1 cut(s)	328
AflIII	ACRYGT	3 cut(s)	474, 589, 804
AgsI	TTSAA	7 cut(s)	82, 91, 295, 394, 783, 811, 853
AjiI	CACGTC	1 cut(s)	475
AjuI	GAANNNNNNNTTGG	2 cut(s)	413, 445
AleI	CACNNNNGTG	1 cut(s)	268
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw26I	GTCTC	2 cut(s)	26, 201
AlwI	GGATC	1 cut(s)	191
Ama87I	CYCGRG	1 cut(s)	558
AoxI	GGCC	2 cut(s)	55, 246
ApeKI	GCWGC	2 cut(s)	729, 833
ApoI	RAATTY	3 cut(s)	158, 403, 487
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	346
AsuC2I	CCSGG	2 cut(s)	559, 560
AsuHPI	GGTGA	1 cut(s)	611
AvaI	CYCGRG	1 cut(s)	558
AvaII	GGWCC	1 cut(s)	346
BaeI	ACNNNNGTAYC	2 cut(s)	844, 877
BalI	TGGCCA	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	741, 845
BccI	CCATC	1 cut(s)	545
BceAI	ACGGC	2 cut(s)	563, 701
BcnI	CCSGG	2 cut(s)	559, 560
BcoDI	GTCTC	2 cut(s)	26, 201
BfaI	CTAG	3 cut(s)	152, 830, 876
BfuAI	ACCTGC	1 cut(s)	319
BisI	GCNGC	2 cut(s)	730, 834
BlsI	GCNGC	2 cut(s)	731, 835
Bme1390I	CCNGG	2 cut(s)	559, 560
Bme18I	GGWCC	1 cut(s)	346
BmeT110I	CYCGRG	1 cut(s)	558
BmgBI	CACGTC	1 cut(s)	475
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	2 cut(s)	17, 556
BmrFI	CCNGG	2 cut(s)	559, 560
BmsI	GCATC	1 cut(s)	461
BpuMI	CCSGG	2 cut(s)	559, 560
Bsa29I	ATCGAT	1 cut(s)	822
BsaBI	GATNNNNATC	2 cut(s)	759, 818
BsaJI	CCNNGG	1 cut(s)	558
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse118I	RCCGGY	1 cut(s)	248
Bse8I	GATNNNNATC	2 cut(s)	759, 818
BseCI	ATCGAT	1 cut(s)	822
BseDI	CCNNGG	1 cut(s)	558
BseGI	GGATG	1 cut(s)	391
BseJI	GATNNNNATC	2 cut(s)	759, 818
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseXI	GCAGC	2 cut(s)	741, 845
BsgI	GTGCAG	1 cut(s)	347
BshFI	GGCC	2 cut(s)	57, 248
BshNI	GGYRCC	1 cut(s)	15
BshVI	ATCGAT	1 cut(s)	822
BsiHKCI	CYCGRG	1 cut(s)	558
BsiSI	CCGG	3 cut(s)	5, 249, 559
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	2 cut(s)	26, 201
BsmBI	CGTCTC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	224
BsnI	GGCC	2 cut(s)	57, 248
BsoBI	CYCGRG	1 cut(s)	558
Bsp143I	GATC	4 cut(s)	163, 183, 498, 819
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	2 cut(s)	57, 248
BspDI	ATCGAT	1 cut(s)	822
BspHI	TCATGA	2 cut(s)	501, 544
BspLI	GGNNCC	2 cut(s)	17, 556
BspMI	ACCTGC	1 cut(s)	319
BspPI	GGATC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	558
BssMI	GATC	4 cut(s)	163, 183, 498, 819
Bst4CI	ACNGT	3 cut(s)	20, 118, 191
Bst6I	CTCTTC	1 cut(s)	642
BstAPI	GCANNNNNTGC	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	250
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	391
BstKTI	GATC	4 cut(s)	166, 186, 501, 822
BstMAI	GTCTC	2 cut(s)	26, 201
BstMBI	GATC	4 cut(s)	163, 183, 498, 819
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 258, 749
BstNSI	RCATGY	2 cut(s)	593, 808
BstSCI	CCNGG	2 cut(s)	557, 558
BstV1I	GCAGC	2 cut(s)	741, 845
Bsu15I	ATCGAT	1 cut(s)	822
BsuRI	GGCC	2 cut(s)	57, 248
BsuTUI	ATCGAT	1 cut(s)	822
BtrI	CACGTC	1 cut(s)	475
BtsCI	GGATG	1 cut(s)	391
BtsIMutI	CAGTG	1 cut(s)	636
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	250
CciI	TCATGA	2 cut(s)	501, 544
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	346
Cfr9I	CCCGGG	1 cut(s)	558
ClaI	ATCGAT	1 cut(s)	822
CseI	GACGC	2 cut(s)	671, 796
Csp6I	GTAC	1 cut(s)	861
CviAII	CATG	5 cut(s)	253, 502, 545, 590, 805
CviJI	RGCY	7 cut(s)	57, 86, 248, 298, 512, 716, 798
CviKI_1	RGCY	7 cut(s)	57, 86, 248, 298, 512, 716, 798
CviQI	GTAC	1 cut(s)	861
DpnI	GATC	4 cut(s)	165, 185, 500, 821
DpnII	GATC	4 cut(s)	163, 183, 498, 819
DraIII	CACNNNGTG	1 cut(s)	475
EaeI	YGGCCR	2 cut(s)	55, 246
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
Eco47I	GGWCC	1 cut(s)	346
Eco88I	CYCGRG	1 cut(s)	558
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoRI	GAATTC	1 cut(s)	403
Esp3I	CGTCTC	1 cut(s)	26
FaeI	CATG	5 cut(s)	256, 505, 548, 593, 808
FatI	CATG	5 cut(s)	252, 501, 544, 589, 804
FblI	GTMKAC	1 cut(s)	884
Fnu4HI	GCNGC	2 cut(s)	730, 834
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	2 cut(s)	730, 834
FspBI	CTAG	3 cut(s)	152, 830, 876
GluI	GCNGC	2 cut(s)	730, 834
HaeIII	GGCC	2 cut(s)	57, 248
HapII	CCGG	3 cut(s)	5, 249, 559
HgaI	GACGC	2 cut(s)	671, 796
Hin1II	CATG	5 cut(s)	256, 505, 548, 593, 808
HindIII	AAGCTT	1 cut(s)	296
HpaII	CCGG	3 cut(s)	5, 249, 559
HphI	GGTGA	1 cut(s)	611
Hpy166II	GTNNAC	3 cut(s)	346, 565, 885
Hpy188III	TCNNGA	5 cut(s)	377, 502, 545, 692, 876
Hpy8I	GTNNAC	3 cut(s)	346, 565, 885
Hpy99I	CGWCG	1 cut(s)	476
HpyAV	CCTTC	3 cut(s)	76, 788, 839
HpyCH4III	ACNGT	3 cut(s)	20, 118, 191
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	4 cut(s)	99, 328, 721, 759
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 258, 749
HpySE526I	ACGT	1 cut(s)	474
Hsp92II	CATG	5 cut(s)	256, 505, 548, 593, 808
KroI	GCCGGC	1 cut(s)	248
KroNI	GCCGGC	1 cut(s)	250
Kzo9I	GATC	4 cut(s)	163, 183, 498, 819
LpnPI	CCDG	7 cut(s)	18, 79, 128, 262, 314, 572, 705
Lsp1109I	GCAGC	2 cut(s)	741, 845
LweI	GCATC	1 cut(s)	461
MaeI	CTAG	3 cut(s)	152, 830, 876
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	2 cut(s)	585, 634
MalI	GATC	4 cut(s)	165, 185, 500, 821
MboI	GATC	4 cut(s)	163, 183, 498, 819
MboII	GAAGA	8 cut(s)	220, 446, 447, 560, 618, 659, 823, 829
MlsI	TGGCCA	1 cut(s)	57
MluCI	AATT	6 cut(s)	125, 158, 363, 403, 487, 837
MluNI	TGGCCA	1 cut(s)	57
MnlI	CCTC	4 cut(s)	268, 502, 643, 652
Mox20I	TGGCCA	1 cut(s)	57
MroNI	GCCGGC	1 cut(s)	248
MroXI	GAANNNNTTC	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	57
MseI	TTAA	2 cut(s)	62, 480
MslI	CAYNNNNRTG	3 cut(s)	174, 268, 549
Msp20I	TGGCCA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	3 cut(s)	5, 249, 559
MspR9I	CCNGG	2 cut(s)	559, 560
Mva1269I	GAATGC	1 cut(s)	224
MwoI	GCNNNNNNNGC	3 cut(s)	148, 258, 749
NaeI	GCCGGC	1 cut(s)	250
NciI	CCSGG	2 cut(s)	559, 560
NdeII	GATC	4 cut(s)	163, 183, 498, 819
NgoMIV	GCCGGC	1 cut(s)	248
NlaIII	CATG	5 cut(s)	256, 505, 548, 593, 808
NlaIV	GGNNCC	2 cut(s)	17, 556
NmuCI	GTSAC	2 cut(s)	585, 634
NspI	RCATGY	2 cut(s)	593, 808
OliI	CACNNNNGTG	1 cut(s)	268
PagI	TCATGA	2 cut(s)	501, 544
PciI	ACATGT	2 cut(s)	589, 804
PctI	GAATGC	1 cut(s)	224
PdiI	GCCGGC	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	731, 835
PscI	ACATGT	2 cut(s)	589, 804
PspN4I	GGNNCC	2 cut(s)	17, 556
PspPI	GGNCC	1 cut(s)	346
RsaI	GTAC	1 cut(s)	862
RsaNI	GTAC	1 cut(s)	861
RseI	CAYNNNNRTG	3 cut(s)	174, 268, 549
SaqAI	TTAA	2 cut(s)	62, 480
SatI	GCNGC	2 cut(s)	730, 834
Sau3AI	GATC	4 cut(s)	163, 183, 498, 819
Sau96I	GGNCC	1 cut(s)	346
ScrFI	CCNGG	2 cut(s)	559, 560
SetI	ASST	9 cut(s)	43, 98, 137, 272, 300, 333, 477, 654, 850
SfaNI	GCATC	1 cut(s)	461
SinI	GGWCC	1 cut(s)	346
SmaI	CCCGGG	1 cut(s)	560
SmiMI	CAYNNNNRTG	3 cut(s)	174, 268, 549
Sse9I	AATT	6 cut(s)	125, 158, 363, 403, 487, 837
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	3 cut(s)	152, 830, 876
StyD4I	CCNGG	2 cut(s)	557, 558
TaaI	ACNGT	3 cut(s)	20, 118, 191
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	3 cut(s)	308, 657, 822
TaqII	GACCGA	1 cut(s)	363
TasI	AATT	6 cut(s)	125, 158, 363, 403, 487, 837
Tru1I	TTAA	2 cut(s)	62, 480
Tru9I	TTAA	2 cut(s)	62, 480
TscAI	CASTG	1 cut(s)	643
TseFI	GTSAC	2 cut(s)	585, 634
TseI	GCWGC	2 cut(s)	729, 833
Tsp45I	GTSAC	2 cut(s)	585, 634
TspGWI	ACGGA	1 cut(s)	221
TspMI	CCCGGG	1 cut(s)	558
TspRI	CASTG	1 cut(s)	643
VpaK11BI	GGWCC	1 cut(s)	346
XagI	CCTNNNNNAGG	1 cut(s)	326
XapI	RAATTY	3 cut(s)	158, 403, 487
XbaI	TCTAGA	1 cut(s)	875
XceI	RCATGY	2 cut(s)	593, 808
XmaI	CCCGGG	1 cut(s)	558
XmiI	GTMKAC	1 cut(s)	884
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	3 cut(s)	152, 830, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.