Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Reverse (-)

38194679 .. 38195089

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g46000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGTTTCTATCGATGCTGCTACGGCAAGTTTCGCTGGCTTTGGCTACCGGAGAGACTGCTCCTCCCGTCCAATGGGGCAGATTAGTCATGTTGGCTATAAGGCAGCGACTATGCGGCTCCGGTTGGGTTTGATGGCACCGTTTGGACCAATTGAGGACTGGAAATCGTGGCTGCCAGAGATTCGAAGAAGGTGGCCGGCAAAGACAGCGCTGCTAGCTTGGAAGAGGAAAGGGATATGGGCTTGGATCTGGGCTTTTGGGCCTGGTTTTGAGCTTATCCATTTATGCAGGCCTTTTGGTGGACTTGAGTCAATGCTTGCCCAGAAATTATCTACTTCGTCTCACATGACATCCTCAAGGTCTGATCAGGGAGAGACTAGCCCTACTACTAAGGGTAAGGATGTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.16

Weight (kDa)

10.17

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	136
AciI	CCGC	1 cut(s)	115
AclWI	GGATC	1 cut(s)	254
AcoI	YGGCCR	1 cut(s)	194
AfeI	AGCGCT	1 cut(s)	210
AfiI	CCNNNNNNNGG	2 cut(s)	73, 299
AjnI	CCWGG	1 cut(s)	262
AluBI	AGCT	3 cut(s)	218, 274, 407
AluI	AGCT	3 cut(s)	218, 274, 407
Alw26I	GTCTC	3 cut(s)	48, 345, 368
AlwI	GGATC	1 cut(s)	254
Aor51HI	AGCGCT	1 cut(s)	210
AoxI	GGCC	3 cut(s)	194, 260, 290
ApeKI	GCWGC	4 cut(s)	17, 104, 172, 211
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	2 cut(s)	146, 260
AsuII	TTCGAA	1 cut(s)	184
AsuNHI	GCTAGC	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	136
BbvI	GCAGC	4 cut(s)	4, 116, 159, 198
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	264
BclI	TGATCA	1 cut(s)	364
BcoDI	GTCTC	3 cut(s)	48, 345, 368
BfaI	CTAG	2 cut(s)	215, 378
BfoI	RGCGCY	1 cut(s)	212
BisI	GCNGC	5 cut(s)	18, 105, 116, 173, 212
BlsI	GCNGC	5 cut(s)	19, 106, 117, 174, 213
Bme1390I	CCNGG	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	2 cut(s)	146, 260
BmiI	GGNNCC	2 cut(s)	119, 138
BmrFI	CCNGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	4
BmtI	GCTAGC	1 cut(s)	218
BoxI	GACNNNNGTC	1 cut(s)	307
Bpu14I	TTCGAA	1 cut(s)	184
BpuEI	CTTGAG	2 cut(s)	326, 340
Bsa29I	ATCGAT	1 cut(s)	12
BsaWI	WCCGGW	2 cut(s)	48, 120
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 299
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	264
BseCI	ATCGAT	1 cut(s)	12
BseGI	GGATG	2 cut(s)	350, 406
BseLI	CCNNNNNNNGG	2 cut(s)	73, 299
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	52
BseXI	GCAGC	4 cut(s)	4, 116, 159, 198
BshFI	GGCC	3 cut(s)	196, 262, 292
BshNI	GGYRCC	1 cut(s)	136
BshVI	ATCGAT	1 cut(s)	12
BsiSI	CCGG	3 cut(s)	49, 121, 197
BslI	CCNNNNNNNGG	2 cut(s)	73, 299
BsmAI	GTCTC	3 cut(s)	48, 345, 368
BsmBI	CGTCTC	1 cut(s)	345
BsnI	GGCC	3 cut(s)	196, 262, 292
Bsp119I	TTCGAA	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	246, 364
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	3 cut(s)	196, 262, 292
BspDI	ATCGAT	1 cut(s)	12
BspLI	GGNNCC	2 cut(s)	119, 138
BspOI	GCTAGC	1 cut(s)	218
BspPI	GGATC	1 cut(s)	254
BspT104I	TTCGAA	1 cut(s)	184
BspT107I	GGYRCC	1 cut(s)	136
BsrFI	RCCGGY	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	196
BssMI	GATC	2 cut(s)	246, 364
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	141
Bst6I	CTCTTC	1 cut(s)	218
BstBI	TTCGAA	1 cut(s)	184
BstC8I	GCNNGC	5 cut(s)	37, 198, 216, 290, 318
BstDEI	CTNAG	1 cut(s)	390
BstF5I	GGATG	2 cut(s)	350, 406
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	2 cut(s)	249, 367
BstMAI	GTCTC	3 cut(s)	48, 345, 368
BstMBI	GATC	2 cut(s)	246, 364
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 32, 206, 215
BstNI	CCWGG	1 cut(s)	264
BstPAI	GACNNNNGTC	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	262
BstV1I	GCAGC	4 cut(s)	4, 116, 159, 198
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
Bsu15I	ATCGAT	1 cut(s)	12
BsuRI	GGCC	3 cut(s)	196, 262, 292
BsuTUI	ATCGAT	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	350, 406
Cac8I	GCNNGC	5 cut(s)	37, 198, 216, 290, 318
CfoI	GCGC	1 cut(s)	211
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	146, 260
ClaI	ATCGAT	1 cut(s)	12
CviAII	CATG	2 cut(s)	89, 346
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	2 cut(s)	248, 366
DpnII	GATC	2 cut(s)	246, 364
EaeI	YGGCCR	1 cut(s)	194
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco147I	AGGCCT	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	146
Eco47III	AGCGCT	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	262
Esp3I	CGTCTC	1 cut(s)	345
FaeI	CATG	2 cut(s)	92, 349
FaiI	YATR	6 cut(s)	90, 99, 113, 238, 286, 347
FatI	CATG	2 cut(s)	88, 345
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	5 cut(s)	18, 105, 116, 173, 212
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	5 cut(s)	18, 105, 116, 173, 212
FspBI	CTAG	2 cut(s)	215, 378
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	5 cut(s)	18, 105, 116, 173, 212
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	3 cut(s)	196, 262, 292
HapII	CCGG	3 cut(s)	49, 121, 197
HhaI	GCGC	1 cut(s)	211
Hin1II	CATG	2 cut(s)	92, 349
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HinfI	GANTC	2 cut(s)	181, 308
HpaII	CCGG	3 cut(s)	49, 121, 197
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	1 cut(s)	364
Hpy8I	GTNNAC	1 cut(s)	302
HpyAV	CCTTC	1 cut(s)	183
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4V	TGCA	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 32, 206, 215
HpyF3I	CTNAG	1 cut(s)	390
Hsp92II	CATG	2 cut(s)	92, 349
HspAI	GCGC	1 cut(s)	209
KroI	GCCGGC	1 cut(s)	196
KroNI	GCCGGC	1 cut(s)	198
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	246, 364
LmnI	GCTCC	2 cut(s)	65, 123
Lsp1109I	GCAGC	4 cut(s)	4, 116, 159, 198
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	2 cut(s)	215, 378
MalI	GATC	2 cut(s)	248, 366
MboI	GATC	2 cut(s)	246, 364
MboII	GAAGA	2 cut(s)	198, 235
MfeI	CAATTG	1 cut(s)	150
MflI	RGATCY	1 cut(s)	246
MluCI	AATT	2 cut(s)	150, 326
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	4 cut(s)	73, 148, 219, 364
MroNI	GCCGGC	1 cut(s)	196
MseI	TTAA	1 cut(s)	409
MspI	CCGG	3 cut(s)	49, 121, 197
MspR9I	CCNGG	1 cut(s)	264
MunI	CAATTG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	4 cut(s)	23, 32, 206, 215
NaeI	GCCGGC	1 cut(s)	198
NdeII	GATC	2 cut(s)	246, 364
NgoMIV	GCCGGC	1 cut(s)	196
NheI	GCTAGC	1 cut(s)	214
NlaIII	CATG	2 cut(s)	92, 349
NlaIV	GGNNCC	2 cut(s)	119, 138
NspV	TTCGAA	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	292
PdiI	GCCGGC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	5 cut(s)	19, 106, 117, 174, 213
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PshAI	GACNNNNGTC	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	262
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	2 cut(s)	119, 138
PspPI	GGNCC	2 cut(s)	146, 260
PsuI	RGATCY	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	409
SatI	GCNGC	5 cut(s)	18, 105, 116, 173, 212
Sau3AI	GATC	2 cut(s)	246, 364
Sau96I	GGNCC	2 cut(s)	146, 260
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	264
SetI	ASST	5 cut(s)	194, 220, 276, 362, 409
SfaNI	GCATC	1 cut(s)	4
SfuI	TTCGAA	1 cut(s)	184
SinI	GGWCC	1 cut(s)	146
SmlI	CTYRAG	2 cut(s)	305, 355
SmoI	CTYRAG	2 cut(s)	305, 355
Sse9I	AATT	2 cut(s)	150, 326
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	1 cut(s)	115
SspMI	CTAG	2 cut(s)	215, 378
StuI	AGGCCT	1 cut(s)	292
StyD4I	CCNGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	12, 184
TasI	AATT	2 cut(s)	150, 326
TauI	GCSGC	1 cut(s)	118
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
TseI	GCWGC	4 cut(s)	17, 104, 172, 211
VpaK11BI	GGWCC	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	156
XspI	CTAG	2 cut(s)	215, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.