Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Reverse (-)

22660456 .. 22661109

Gene Structure 654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023369

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTCTTCACTGGAAGAAACACCCCCCATTGTGAACTGGGATCAAAAGAAGCCTAGTCTCGATATTGCAGGTAGCCTTATGGTCCCCGCATTGGATGAAAAGCATAAGCATATCTCTGATGAATATGAGAAGGAAGACGACTCAAAGCCAATACATGCGCACACATGTTCTGCTGTTGAAGAAGGATTTTGCATCCATATCACCGATATCACTAAAAGACCATGCGGCACATGTGCACACCTGTACAACGTCGGTCCAGACAACAAAAAGAGATGCAGTTGTATTTTATGCCACTGGGAAGAGGAACAAGATGGGAATGCCAATTCACCTCCCTCAGGCTTCTCAATGGTGTTTAGGCAAATGGTGTCTACTTGCCTAATTGTGTTGTATGGTGAAAATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

15.01

Weight (kDa)

5.05

Isoelectric Point (pI)

59.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	159
Acc36I	ACCTGC	1 cut(s)	59
AccI	GTMKAC	1 cut(s)	368
AciI	CCGC	2 cut(s)	87, 225
AclWI	GGATC	1 cut(s)	48
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	2 cut(s)	91, 335
AflIII	ACRYGT	2 cut(s)	164, 230
AgsI	TTSAA	1 cut(s)	179
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	1 cut(s)	62
Alw44I	GTGCAC	1 cut(s)	234
AlwI	GGATC	1 cut(s)	48
ApaLI	GTGCAC	1 cut(s)	234
AspLEI	GCGC	1 cut(s)	160
AspS9I	GGNCC	2 cut(s)	82, 254
AsuHPI	GGTGA	3 cut(s)	193, 318, 404
AvaII	GGWCC	2 cut(s)	82, 254
AxyI	CCTNAGG	1 cut(s)	334
BaeGI	GKGCMC	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	238
BccI	CCATC	1 cut(s)	305
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	1 cut(s)	54
BfuAI	ACCTGC	1 cut(s)	59
BisI	GCNGC	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	227
Bme18I	GGWCC	2 cut(s)	82, 254
BmgT120I	GGNCC	2 cut(s)	82, 254
BmiI	GGNNCC	1 cut(s)	84
BmrI	ACTGGG	2 cut(s)	46, 304
BmsI	GCATC	2 cut(s)	201, 263
BmuI	ACTGGG	2 cut(s)	46, 304
BpiI	GAAGAC	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 335
Bse1I	ACTGG	3 cut(s)	15, 41, 299
Bse21I	CCTNAGG	1 cut(s)	334
BseGI	GGATG	2 cut(s)	100, 192
BseLI	CCNNNNNNNGG	2 cut(s)	91, 335
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	3 cut(s)	15, 41, 299
BseSI	GKGCMC	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	91, 335
BsmAI	GTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	2 cut(s)	87, 225
BspCNI	CTCAG	1 cut(s)	347
BspLI	GGNNCC	1 cut(s)	84
BspMI	ACCTGC	1 cut(s)	59
BspPI	GGATC	1 cut(s)	48
BsrGI	TGTACA	1 cut(s)	243
BsrI	ACTGG	3 cut(s)	15, 41, 299
BssMI	GATC	1 cut(s)	40
Bst6I	CTCTTC	1 cut(s)	294
BstAUI	TGTACA	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	334
BstENI	CCTNNNNNAGG	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	100, 192
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	1 cut(s)	40
BstNSI	RCATGY	3 cut(s)	158, 168, 234
BstSLI	GKGCMC	1 cut(s)	238
BstV2I	GAAGAC	1 cut(s)	141
Bsu36I	CCTNAGG	1 cut(s)	334
BtsCI	GGATG	2 cut(s)	100, 192
BtsIMutI	CAGTG	2 cut(s)	8, 292
BveI	ACCTGC	1 cut(s)	59
CfoI	GCGC	1 cut(s)	160
Cfr13I	GGNCC	2 cut(s)	82, 254
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	4 cut(s)	155, 165, 222, 231
CviJI	RGCY	4 cut(s)	52, 75, 148, 339
CviKI_1	RGCY	4 cut(s)	52, 75, 148, 339
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	334
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco32I	GATATC	1 cut(s)	208
Eco47I	GGWCC	2 cut(s)	82, 254
Eco81I	CCTNAGG	1 cut(s)	334
EcoNI	CCTNNNNNAGG	1 cut(s)	333
EcoRV	GATATC	1 cut(s)	208
FaeI	CATG	4 cut(s)	158, 168, 225, 234
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	4 cut(s)	154, 164, 221, 230
FauI	CCCGC	1 cut(s)	94
FblI	GTMKAC	1 cut(s)	368
Fnu4HI	GCNGC	1 cut(s)	226
FokI	GGATG	2 cut(s)	107, 179
Fsp4HI	GCNGC	1 cut(s)	226
FspAI	RTGCGCAY	1 cut(s)	159
FspBI	CTAG	1 cut(s)	54
FspI	TGCGCA	1 cut(s)	159
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	226
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	4 cut(s)	158, 168, 225, 234
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	1 cut(s)	140
HphI	GGTGA	3 cut(s)	193, 318, 404
Hpy166II	GTNNAC	3 cut(s)	34, 236, 369
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	2 cut(s)	59, 257
Hpy8I	GTNNAC	3 cut(s)	34, 236, 369
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	124, 176
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	4 cut(s)	68, 192, 236, 276
HpyF3I	CTNAG	1 cut(s)	334
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	4 cut(s)	158, 168, 225, 234
HspAI	GCGC	1 cut(s)	158
Kzo9I	GATC	1 cut(s)	40
LpnPI	CCDG	6 cut(s)	22, 54, 254, 270, 280, 321
LweI	GCATC	2 cut(s)	201, 263
MaeI	CTAG	1 cut(s)	54
MaeII	ACGT	1 cut(s)	249
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	4 cut(s)	26, 146, 191, 311
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	2 cut(s)	322, 378
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	3 cut(s)	295, 339, 343
Mva1269I	GAATGC	1 cut(s)	322
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	4 cut(s)	158, 168, 225, 234
NlaIV	GGNNCC	1 cut(s)	84
NsbI	TGCGCA	1 cut(s)	159
NspI	RCATGY	3 cut(s)	158, 168, 234
PciI	ACATGT	2 cut(s)	164, 230
PctI	GAATGC	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	227
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PscI	ACATGT	2 cut(s)	164, 230
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	2 cut(s)	82, 254
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	2 cut(s)	82, 254
SchI	GAGTC	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	4 cut(s)	73, 243, 252, 331
SfaNI	GCATC	2 cut(s)	201, 263
SinI	GGWCC	2 cut(s)	82, 254
Sse9I	AATT	2 cut(s)	322, 378
SsiI	CCGC	2 cut(s)	87, 225
SspMI	CTAG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	60
TaqII	GACCGA	1 cut(s)	242
TasI	AATT	2 cut(s)	322, 378
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	1 cut(s)	228
TscAI	CASTG	2 cut(s)	15, 299
TspDTI	ATGAA	2 cut(s)	111, 135
TspRI	CASTG	2 cut(s)	15, 299
VneI	GTGCAC	1 cut(s)	234
VpaK11BI	GGWCC	2 cut(s)	82, 254
XagI	CCTNNNNNAGG	1 cut(s)	333
XceI	RCATGY	3 cut(s)	158, 168, 234
XmiI	GTMKAC	1 cut(s)	368
XspI	CTAG	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.