Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

9092883 .. 9094044

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08643.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGCCAAAGGCGGTACTCACAAACAGTGACGAGGCCATGCGTAAGGCAATTGAAACTGTGATGCCGGAAGCAAGGCACCGTCTATGTATTTGGCACATAGGTAAAAATGCATTTACCCACTTAAAGTCTGAGGAAAAGTTGAAGGCTTTTAACAGTTGCGTGAGGAAGTATCAAATGGTTGAGCAATTTGAAAGGTTGTGGCAGGATATGATTGACGAACTTGATCTCCATGACGATATTTGGATCGGGAATATGTATGAAAAGAGAGACGAGTTTTGTCAAGCATTCTTTAGTGACATATTTATGGCCAGAATGAGAAGCACACAAAGATTACTTATGAAACTGAGACACAATCAAGAAAGGGATGAATTCATCAATATGAATTCCTTTCCTGGTGCCGTAACTCACTTGGTAGATTTGGAGATACAAGACTCTTCTATATTCACACACGATGTGTTTAAGTGGATTGTATCAGTTTACAAACGGCCTGAATTTGACCACATTGTTGTTTACCACCCTGAGAAAGAGACTGACAGTGCAGAAGACCCGATTATGATGTGTTCTTGCAAAATGTTTCAGTACAGGGGAGTACCATGTCATCACATGTTCACGGTGATGAAAAACAAACACATTTATGAGTTTCACAAGTCACTGATCGTCAAGAGATGGTCAAATGACGCAAGAACTATGTGTGAAATCCTTTATCTGGATCAATCTATGCCTAGAGAAGCATTGGAAGTGAGCAGGTATGGTGCTCTAACTGCCGAATGCAATCGATTGTGCTTTTATGCTTCAAAGACAAATGCAGGGTACAACTTGTTGCAGAAGGAGATCAGTAGACTCTCATCAATTATGGAAGGTTTTGCCAAAGAAAAAGAAAAAGTTCAAGCTCCGGCCACACCCAACAACATGAAAGGTAATGTTGTTAGAGACCCTATCCCGGTTAGGACCAAAGGCAGCGAAAAAAATGACAAGAAGACTGAGGCTCCTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

332

Amino Acids

38.98

Weight (kDa)

8.01

Isoelectric Point (pI)

47.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MULE	PF10551	2 - 36	4e-08	MULE transposase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	735
AccB1I	GGYRCC	2 cut(s)	75, 395
AccI	GTMKAC	1 cut(s)	838
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	2 cut(s)	251, 717
AcoI	YGGCCR	2 cut(s)	306, 894
AcsI	RAATTY	3 cut(s)	368, 382, 491
AdeI	CACNNNGTG	1 cut(s)	454
AfaI	GTAC	4 cut(s)	15, 581, 591, 812
AfiI	CCNNNNNNNGG	2 cut(s)	706, 940
AflIII	ACRYGT	1 cut(s)	603
AgsI	TTSAA	5 cut(s)	53, 142, 191, 795, 887
AjnI	CCWGG	1 cut(s)	391
AloI	GAACNNNNNNTCC	2 cut(s)	210, 242
AluBI	AGCT	1 cut(s)	890
AluI	AGCT	1 cut(s)	890
Alw21I	GWGCWC	1 cut(s)	757
Alw26I	GTCTC	4 cut(s)	261, 340, 521, 924
AlwI	GGATC	2 cut(s)	251, 717
AoxI	GGCC	4 cut(s)	33, 306, 485, 894
ApeKI	GCWGC	1 cut(s)	957
ApoI	RAATTY	3 cut(s)	368, 382, 491
Asp700I	GAANNNNTTC	1 cut(s)	882
AspS9I	GGNCC	1 cut(s)	948
AsuC2I	CCSGG	1 cut(s)	941
AsuHPI	GGTGA	1 cut(s)	625
AvaII	GGWCC	1 cut(s)	948
BalI	TGGCCA	1 cut(s)	308
BanI	GGYRCC	2 cut(s)	75, 395
BbsI	GAAGAC	2 cut(s)	549, 983
Bbv12I	GWGCWC	1 cut(s)	757
BbvI	GCAGC	1 cut(s)	969
BccI	CCATC	1 cut(s)	660
BceAI	ACGGC	2 cut(s)	383, 500
BciT130I	CCWGG	1 cut(s)	393
BcnI	CCSGG	1 cut(s)	941
BcoDI	GTCTC	4 cut(s)	261, 340, 521, 924
BfaI	CTAG	2 cut(s)	723, 990
BfuAI	ACCTGC	1 cut(s)	735
BisI	GCNGC	1 cut(s)	958
BlsI	GCNGC	1 cut(s)	959
Bme1390I	CCNGG	2 cut(s)	393, 941
Bme18I	GGWCC	1 cut(s)	948
BmgT120I	GGNCC	1 cut(s)	948
BmiI	GGNNCC	3 cut(s)	77, 397, 987
BmrFI	CCNGG	2 cut(s)	393, 941
BmsI	GCATC	1 cut(s)	51
BpiI	GAAGAC	2 cut(s)	549, 983
BpuMI	CCSGG	1 cut(s)	941
Bsa29I	ATCGAT	1 cut(s)	775
BsaI	GGTCTC	1 cut(s)	924
BsaXI	ACNNNNNCTCC	3 cut(s)	210, 240, 970
Bsc4I	CCNNNNNNNGG	2 cut(s)	706, 940
BseBI	CCWGG	1 cut(s)	393
BseCI	ATCGAT	1 cut(s)	775
BseGI	GGATG	1 cut(s)	370
BseLI	CCNNNNNNNGG	2 cut(s)	706, 940
BseMII	CTCAG	4 cut(s)	120, 335, 510, 972
BseXI	GCAGC	1 cut(s)	969
BsgI	GTGCAG	1 cut(s)	558
BshFI	GGCC	4 cut(s)	35, 308, 487, 896
BshNI	GGYRCC	2 cut(s)	75, 395
BshVI	ATCGAT	1 cut(s)	775
BsiHKAI	GWGCWC	1 cut(s)	757
BsiSI	CCGG	3 cut(s)	65, 893, 941
BslI	CCNNNNNNNGG	2 cut(s)	706, 940
BsmAI	GTCTC	4 cut(s)	261, 340, 521, 924
BsmBI	CGTCTC	1 cut(s)	261
BsmI	GAATGC	2 cut(s)	284, 773
BsnI	GGCC	4 cut(s)	35, 308, 487, 896
Bso31I	GGTCTC	1 cut(s)	924
Bsp1286I	GDGCHC	1 cut(s)	757
Bsp143I	GATC	5 cut(s)	223, 243, 654, 709, 831
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	4 cut(s)	35, 308, 487, 896
BspCNI	CTCAG	4 cut(s)	121, 336, 511, 973
BspDI	ATCGAT	1 cut(s)	775
BspLI	GGNNCC	3 cut(s)	77, 397, 987
BspMI	ACCTGC	1 cut(s)	735
BspPI	GGATC	2 cut(s)	251, 717
BspT107I	GGYRCC	2 cut(s)	75, 395
BspTNI	GGTCTC	1 cut(s)	924
BssMI	GATC	5 cut(s)	223, 243, 654, 709, 831
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	6 cut(s)	26, 58, 80, 155, 536, 613
Bst6I	CTCTTC	1 cut(s)	439
BstDEI	CTNAG	4 cut(s)	129, 344, 519, 981
BstF5I	GGATG	1 cut(s)	370
BstKTI	GATC	5 cut(s)	226, 246, 657, 712, 834
BstMAI	GTCTC	4 cut(s)	261, 340, 521, 924
BstMBI	GATC	5 cut(s)	223, 243, 654, 709, 831
BstMWI	GCNNNNNNNGC	1 cut(s)	761
BstNI	CCWGG	1 cut(s)	393
BstNSI	RCATGY	1 cut(s)	607
BstSCI	CCNGG	2 cut(s)	391, 939
BstV1I	GCAGC	1 cut(s)	969
BstV2I	GAAGAC	2 cut(s)	549, 983
Bsu15I	ATCGAT	1 cut(s)	775
BsuRI	GGCC	4 cut(s)	35, 308, 487, 896
BsuTUI	ATCGAT	1 cut(s)	775
BtsCI	GGATG	1 cut(s)	370
BtsIMutI	CAGTG	3 cut(s)	31, 541, 650
BveI	ACCTGC	1 cut(s)	735
Cfr13I	GGNCC	1 cut(s)	948
ClaI	ATCGAT	1 cut(s)	775
CseI	GACGC	1 cut(s)	686
Csp6I	GTAC	4 cut(s)	14, 580, 590, 811
CviAII	CATG	5 cut(s)	37, 230, 594, 604, 910
CviJI	RGCY	7 cut(s)	35, 146, 308, 487, 890, 896, 986
CviKI_1	RGCY	7 cut(s)	35, 146, 308, 487, 890, 896, 986
CviQI	GTAC	4 cut(s)	14, 580, 590, 811
DdeI	CTNAG	4 cut(s)	129, 344, 519, 981
DpnI	GATC	5 cut(s)	225, 245, 656, 711, 833
DpnII	GATC	5 cut(s)	223, 243, 654, 709, 831
DraIII	CACNNNGTG	1 cut(s)	454
EaeI	YGGCCR	2 cut(s)	306, 894
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
Eco31I	GGTCTC	1 cut(s)	924
Eco47I	GGWCC	1 cut(s)	948
EcoRI	GAATTC	2 cut(s)	368, 382
EcoRII	CCWGG	1 cut(s)	391
EcoT22I	ATGCAT	1 cut(s)	112
Esp3I	CGTCTC	1 cut(s)	261
FaeI	CATG	5 cut(s)	40, 233, 597, 607, 913
FatI	CATG	5 cut(s)	36, 229, 593, 603, 909
FblI	GTMKAC	1 cut(s)	838
Fnu4HI	GCNGC	1 cut(s)	958
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	1 cut(s)	958
FspBI	CTAG	2 cut(s)	723, 990
GluI	GCNGC	1 cut(s)	958
HaeIII	GGCC	4 cut(s)	35, 308, 487, 896
HapII	CCGG	3 cut(s)	65, 893, 941
HgaI	GACGC	1 cut(s)	686
Hin1II	CATG	5 cut(s)	40, 233, 597, 607, 913
HinfI	GANTC	2 cut(s)	431, 840
HpaII	CCGG	3 cut(s)	65, 893, 941
HphI	GGTGA	1 cut(s)	625
Hpy166II	GTNNAC	4 cut(s)	478, 511, 609, 839
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	4 cut(s)	247, 356, 661, 707
Hpy8I	GTNNAC	4 cut(s)	478, 511, 609, 839
HpyAV	CCTTC	3 cut(s)	136, 820, 851
HpyCH4III	ACNGT	6 cut(s)	26, 58, 80, 155, 536, 613
HpyCH4V	TGCA	6 cut(s)	110, 539, 567, 771, 806, 823
HpyF10VI	GCNNNNNNNGC	1 cut(s)	761
HpyF3I	CTNAG	4 cut(s)	129, 344, 519, 981
Hsp92II	CATG	5 cut(s)	40, 233, 597, 607, 913
Kzo9I	GATC	5 cut(s)	223, 243, 654, 709, 831
LmnI	GCTCC	2 cut(s)	895, 991
Lsp1109I	GCAGC	1 cut(s)	969
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	2 cut(s)	723, 990
MaeIII	GTNAC	4 cut(s)	26, 293, 400, 648
MalI	GATC	5 cut(s)	225, 245, 656, 711, 833
MboI	GATC	5 cut(s)	223, 243, 654, 709, 831
MboII	GAAGA	3 cut(s)	426, 554, 988
MfeI	CAATTG	1 cut(s)	48
MhlI	GDGCHC	1 cut(s)	757
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	6 cut(s)	48, 185, 368, 382, 491, 849
MluNI	TGGCCA	1 cut(s)	308
MlyI	GAGTC	2 cut(s)	425, 834
MnlI	CCTC	4 cut(s)	25, 124, 156, 976
Mox20I	TGGCCA	1 cut(s)	308
Mph1103I	ATGCAT	1 cut(s)	112
MroXI	GAANNNNTTC	1 cut(s)	882
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	3 cut(s)	122, 150, 459
MslI	CAYNNNNRTG	4 cut(s)	302, 377, 614, 633
Msp20I	TGGCCA	1 cut(s)	308
MspI	CCGG	3 cut(s)	65, 893, 941
MspR9I	CCNGG	2 cut(s)	393, 941
MunI	CAATTG	1 cut(s)	48
Mva1269I	GAATGC	2 cut(s)	284, 773
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	761
NciI	CCSGG	1 cut(s)	941
NdeII	GATC	5 cut(s)	223, 243, 654, 709, 831
NlaIII	CATG	5 cut(s)	40, 233, 597, 607, 913
NlaIV	GGNNCC	3 cut(s)	77, 397, 987
NmuCI	GTSAC	3 cut(s)	26, 293, 648
NsiI	ATGCAT	1 cut(s)	112
NspI	RCATGY	1 cut(s)	607
PciI	ACATGT	1 cut(s)	603
PctI	GAATGC	2 cut(s)	284, 773
PdmI	GAANNNNTTC	1 cut(s)	882
PkrI	GCNGC	1 cut(s)	959
PleI	GAGTC	2 cut(s)	425, 834
PpsI	GAGTC	2 cut(s)	425, 834
PscI	ACATGT	1 cut(s)	603
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	3 cut(s)	77, 397, 987
PspPI	GGNCC	1 cut(s)	948
RsaI	GTAC	4 cut(s)	15, 581, 591, 812
RsaNI	GTAC	4 cut(s)	14, 580, 590, 811
RseI	CAYNNNNRTG	4 cut(s)	302, 377, 614, 633
SaqAI	TTAA	3 cut(s)	122, 150, 459
SatI	GCNGC	1 cut(s)	958
Sau3AI	GATC	5 cut(s)	223, 243, 654, 709, 831
Sau96I	GGNCC	1 cut(s)	948
SchI	GAGTC	2 cut(s)	425, 834
ScrFI	CCNGG	2 cut(s)	393, 941
SduI	GDGCHC	1 cut(s)	757
SetI	ASST	6 cut(s)	103, 197, 749, 862, 892, 919
SfaNI	GCATC	1 cut(s)	51
SinI	GGWCC	1 cut(s)	948
SmiMI	CAYNNNNRTG	4 cut(s)	302, 377, 614, 633
Sse9I	AATT	6 cut(s)	48, 185, 368, 382, 491, 849
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	2 cut(s)	723, 990
StyD4I	CCNGG	2 cut(s)	391, 939
TaaI	ACNGT	6 cut(s)	26, 58, 80, 155, 536, 613
TaqI	TCGA	1 cut(s)	775
TasI	AATT	6 cut(s)	48, 185, 368, 382, 491, 849
TatI	WGTACW	1 cut(s)	579
Tru1I	TTAA	3 cut(s)	122, 150, 459
Tru9I	TTAA	3 cut(s)	122, 150, 459
TscAI	CASTG	3 cut(s)	31, 541, 657
TseFI	GTSAC	3 cut(s)	26, 293, 648
TseI	GCWGC	1 cut(s)	957
Tsp45I	GTSAC	3 cut(s)	26, 293, 648
TspDTI	ATGAA	7 cut(s)	273, 353, 361, 381, 395, 632, 926
TspRI	CASTG	3 cut(s)	31, 541, 657
VpaK11BI	GGWCC	1 cut(s)	948
XapI	RAATTY	3 cut(s)	368, 382, 491
XceI	RCATGY	1 cut(s)	607
XmiI	GTMKAC	1 cut(s)	838
XmnI	GAANNNNTTC	1 cut(s)	882
XspI	CTAG	2 cut(s)	723, 990
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.