Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

22428713 .. 22429315

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001881

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAAACAAAGTAGTAAAGATTTGGAGGTTCAAATGAAGATGCACACCACCTGTTCGATTAAATGCTCAACTTCGAGATGTGGCTATTGCTTTGATGATTGCTCAACCTATTCGATAAATGTAATTGTTAAAAATTTCATAGTTGTTTTGACAGGTATTATTGGTCCTTTTATTGTGGTGTGCAAGATGTCTTCACTGGAAGAAACACCCCCCATTGTGAACTGGGATCAAAAGAAGCCTAGTCTCGATATTGCAGGTAGCCTTATGGTCCCCGCATTGGATGAAAAGCATAAGCATATCTCTGATGAATATGAGAAGGAAGACGACTCAAAGCCAATACATGCGCACACATGTTCTGCTGTTGAAGAAGGATTTTGCATCCATATCACTGATGTCACTAAAAGACCATGCGGCACATGCGCACACCTGTACAACGTCGGTCCAGACAACAAAAAGAGATGCAGTTGTATTTTATGCCACTGGGAAGAGGAACAAGATGGGAATGCCAATTCACCTCCCTCAGGTTATTGGTGGTGGCCTAGTAACTCTGAATTCTCTCTAGATATTGATGATTTTCACCAAGCAAGTGTTTTATGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

22.58

Weight (kDa)

5.28

Isoelectric Point (pI)

53.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	345, 421
Acc36I	ACCTGC	1 cut(s)	245
AciI	CCGC	2 cut(s)	273, 411
AclWI	GGATC	1 cut(s)	234
AcsI	RAATTY	2 cut(s)	133, 551
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	2 cut(s)	277, 521
AflIII	ACRYGT	1 cut(s)	350
AgsI	TTSAA	2 cut(s)	32, 365
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	234
AoxI	GGCC	1 cut(s)	536
ApoI	RAATTY	2 cut(s)	133, 551
AspLEI	GCGC	2 cut(s)	346, 422
AspS9I	GGNCC	3 cut(s)	164, 268, 440
AsuHPI	GGTGA	2 cut(s)	504, 569
AvaII	GGWCC	3 cut(s)	164, 268, 440
AxyI	CCTNAGG	1 cut(s)	520
BbsI	GAAGAC	2 cut(s)	183, 327
BccI	CCATC	1 cut(s)	491
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	3 cut(s)	240, 540, 560
BfuAI	ACCTGC	1 cut(s)	245
BisI	GCNGC	1 cut(s)	412
BlsI	GCNGC	1 cut(s)	413
Bme18I	GGWCC	3 cut(s)	164, 268, 440
BmgT120I	GGNCC	3 cut(s)	164, 268, 440
BmiI	GGNNCC	1 cut(s)	270
BmrI	ACTGGG	2 cut(s)	232, 490
BmsI	GCATC	3 cut(s)	30, 387, 449
BmuI	ACTGGG	2 cut(s)	232, 490
BpiI	GAAGAC	2 cut(s)	183, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 521
Bse1I	ACTGG	3 cut(s)	201, 227, 485
Bse21I	CCTNAGG	1 cut(s)	520
BseGI	GGATG	3 cut(s)	286, 378, 603
BseLI	CCNNNNNNNGG	2 cut(s)	277, 521
BseMII	CTCAG	1 cut(s)	534
BseNI	ACTGG	3 cut(s)	201, 227, 485
BshFI	GGCC	1 cut(s)	538
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	277, 521
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	1 cut(s)	538
Bsp1407I	TGTACA	1 cut(s)	429
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	2 cut(s)	273, 411
BspANI	GGCC	1 cut(s)	538
BspCNI	CTCAG	1 cut(s)	533
BspLI	GGNNCC	1 cut(s)	270
BspMI	ACCTGC	1 cut(s)	245
BspPI	GGATC	1 cut(s)	234
BsrGI	TGTACA	1 cut(s)	429
BsrI	ACTGG	3 cut(s)	201, 227, 485
BssMI	GATC	1 cut(s)	226
Bst6I	CTCTTC	1 cut(s)	480
BstAUI	TGTACA	1 cut(s)	429
BstDEI	CTNAG	1 cut(s)	520
BstENI	CCTNNNNNAGG	1 cut(s)	519
BstF5I	GGATG	3 cut(s)	286, 378, 603
BstHHI	GCGC	2 cut(s)	346, 422
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	1 cut(s)	417
BstNSI	RCATGY	3 cut(s)	344, 354, 420
BstV2I	GAAGAC	2 cut(s)	183, 327
Bsu36I	CCTNAGG	1 cut(s)	520
BsuRI	GGCC	1 cut(s)	538
BtsCI	GGATG	3 cut(s)	286, 378, 603
BtsIMutI	CAGTG	3 cut(s)	194, 387, 478
BveI	ACCTGC	1 cut(s)	245
CfoI	GCGC	2 cut(s)	346, 422
Cfr13I	GGNCC	3 cut(s)	164, 268, 440
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	4 cut(s)	341, 351, 408, 417
CviJI	RGCY	5 cut(s)	84, 238, 261, 334, 538
CviKI_1	RGCY	5 cut(s)	84, 238, 261, 334, 538
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	1 cut(s)	520
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Eco47I	GGWCC	3 cut(s)	164, 268, 440
Eco81I	CCTNAGG	1 cut(s)	520
EcoNI	CCTNNNNNAGG	1 cut(s)	519
EcoRI	GAATTC	1 cut(s)	551
FaeI	CATG	4 cut(s)	344, 354, 411, 420
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	4 cut(s)	340, 350, 407, 416
FauI	CCCGC	1 cut(s)	280
Fnu4HI	GCNGC	1 cut(s)	412
FokI	GGATG	2 cut(s)	293, 365
Fsp4HI	GCNGC	1 cut(s)	412
FspAI	RTGCGCAY	2 cut(s)	345, 421
FspBI	CTAG	3 cut(s)	240, 540, 560
FspI	TGCGCA	2 cut(s)	345, 421
GlaI	GCGC	2 cut(s)	345, 421
GluI	GCNGC	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	538
HhaI	GCGC	2 cut(s)	346, 422
Hin1II	CATG	4 cut(s)	344, 354, 411, 420
Hin6I	GCGC	2 cut(s)	344, 420
HinP1I	GCGC	2 cut(s)	344, 420
HinfI	GANTC	1 cut(s)	326
HphI	GGTGA	2 cut(s)	504, 569
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	2 cut(s)	304, 550
Hpy188III	TCNNGA	4 cut(s)	75, 245, 443, 560
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	2 cut(s)	310, 362
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	5 cut(s)	43, 183, 254, 378, 462
HpyF10VI	GCNNNNNNNGC	1 cut(s)	417
HpyF3I	CTNAG	1 cut(s)	520
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	4 cut(s)	344, 354, 411, 420
HspAI	GCGC	2 cut(s)	344, 420
Kzo9I	GATC	1 cut(s)	226
LpnPI	CCDG	9 cut(s)	64, 138, 182, 208, 240, 440, 456, 466, 507
LweI	GCATC	3 cut(s)	30, 387, 449
MaeI	CTAG	3 cut(s)	240, 540, 560
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	2 cut(s)	394, 542
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	6 cut(s)	49, 183, 212, 332, 377, 497
MluCI	AATT	4 cut(s)	123, 133, 508, 551
MlyI	GAGTC	1 cut(s)	320
MnlI	CCTC	4 cut(s)	19, 481, 525, 529
MseI	TTAA	2 cut(s)	60, 129
Mva1269I	GAATGC	1 cut(s)	508
MwoI	GCNNNNNNNGC	1 cut(s)	417
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	4 cut(s)	344, 354, 411, 420
NlaIV	GGNNCC	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	394
NsbI	TGCGCA	2 cut(s)	345, 421
NspI	RCATGY	3 cut(s)	344, 354, 420
PciI	ACATGT	1 cut(s)	350
PctI	GAATGC	1 cut(s)	508
PkrI	GCNGC	1 cut(s)	413
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
PscI	ACATGT	1 cut(s)	350
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	3 cut(s)	164, 268, 440
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SaqAI	TTAA	2 cut(s)	60, 129
SatI	GCNGC	1 cut(s)	412
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	3 cut(s)	164, 268, 440
SchI	GAGTC	1 cut(s)	320
SetI	ASST	9 cut(s)	30, 53, 110, 157, 259, 429, 438, 517, 526
SfaNI	GCATC	3 cut(s)	30, 387, 449
SinI	GGWCC	3 cut(s)	164, 268, 440
Sse9I	AATT	4 cut(s)	123, 133, 508, 551
SsiI	CCGC	2 cut(s)	273, 411
SspMI	CTAG	3 cut(s)	240, 540, 560
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	4 cut(s)	56, 74, 113, 246
TaqII	GACCGA	1 cut(s)	428
TasI	AATT	4 cut(s)	123, 133, 508, 551
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	1 cut(s)	414
Tru1I	TTAA	2 cut(s)	60, 129
Tru9I	TTAA	2 cut(s)	60, 129
TscAI	CASTG	3 cut(s)	201, 394, 485
TseFI	GTSAC	1 cut(s)	394
Tsp45I	GTSAC	1 cut(s)	394
TspDTI	ATGAA	5 cut(s)	17, 50, 127, 297, 321
TspRI	CASTG	3 cut(s)	201, 394, 485
VpaK11BI	GGWCC	3 cut(s)	164, 268, 440
XagI	CCTNNNNNAGG	1 cut(s)	519
XapI	RAATTY	2 cut(s)	133, 551
XbaI	TCTAGA	1 cut(s)	559
XceI	RCATGY	3 cut(s)	344, 354, 420
XspI	CTAG	3 cut(s)	240, 540, 560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.