FvH4_3g26292

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000607
Physical Location & Seq
Forward (+)
19240529 .. 19243410
2882 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26292.t1

Sequence Viewer

Length: 225 bp
ATGAAAAGCAATATGGCCCAACGAAATGATGCTAGTTTACCTTTTTATTTATGTTTTCCTATGACTACAAACTTATTTGATCTGATACCAGACCCATTCCGCCGTAACACGATATTGTCCGCTTTGGGCCCACCTGCCCTCACGGTTTTGTTTCCGGCAGCTCAGGAGCAACTTCCCAGTAGGTCCCCTCCGAAGCCGCTGAGCCACCAAAAGGCCTCATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.2

Weight (kDa)

9.3

Isoelectric Point (pI)

76.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 142
Acc36I ACCTGC 1 cut(s) 142
AciI CCGC 3 cut(s) 100, 120, 197
AfiI CCNNNNNNNGG 1 cut(s) 211
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
AoxI GGCC 3 cut(s) 15, 127, 213
ApaI GGGCCC 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 158
AspS9I GGNCC 4 cut(s) 16, 127, 128, 183
AvaII GGWCC 1 cut(s) 183
BaeGI GKGCMC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 87
BfaI CTAG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 142
BisI GCNGC 2 cut(s) 159, 197
BlpI GCTNAGC 1 cut(s) 200
BlsI GCNGC 2 cut(s) 160, 198
Bme18I GGWCC 1 cut(s) 183
BmgT120I GGNCC 4 cut(s) 16, 127, 128, 183
BmiI GGNNCC 2 cut(s) 129, 185
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 1 cut(s) 19
BmuI ACTGGG 1 cut(s) 171
Bpu10I CCTNAGC 1 cut(s) 162
Bpu1102I GCTNAGC 1 cut(s) 200
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse1I ACTGG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMII CTCAG 2 cut(s) 176, 191
BseNI ACTGG 1 cut(s) 177
BseSI GKGCMC 1 cut(s) 131
BseXI GCAGC 1 cut(s) 170
BshFI GGCC 3 cut(s) 17, 129, 215
BsiSI CCGG 1 cut(s) 155
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 3 cut(s) 17, 129, 215
Bsp120I GGGCCC 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 1 cut(s) 79
Bsp1720I GCTNAGC 1 cut(s) 200
BspACI CCGC 3 cut(s) 100, 120, 197
BspANI GGCC 3 cut(s) 17, 129, 215
BspCNI CTCAG 2 cut(s) 175, 192
BspLI GGNNCC 2 cut(s) 129, 185
BspMI ACCTGC 1 cut(s) 142
BsrI ACTGG 1 cut(s) 177
BssMI GATC 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 162, 200
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstSLI GKGCMC 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 170
BsuRI GGCC 3 cut(s) 17, 129, 215
BveI ACCTGC 1 cut(s) 142
Cfr13I GGNCC 4 cut(s) 16, 127, 128, 183
CviAII CATG 1 cut(s) 219
CviJI RGCY 6 cut(s) 17, 129, 161, 196, 204, 215
CviKI_1 RGCY 6 cut(s) 17, 129, 161, 196, 204, 215
DdeI CTNAG 2 cut(s) 162, 200
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
EciI GGCGGA 1 cut(s) 89
Eco147I AGGCCT 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 183
EcoO109I RGGNCCY 1 cut(s) 183
EcoT38I GRGCYC 1 cut(s) 131
FaeI CATG 1 cut(s) 222
FaiI YATR 4 cut(s) 14, 52, 62, 220
FaqI GGGAC 1 cut(s) 169
FatI CATG 1 cut(s) 218
Fnu4HI GCNGC 2 cut(s) 159, 197
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 2 cut(s) 159, 197
FspBI CTAG 1 cut(s) 33
GluI GCNGC 2 cut(s) 159, 197
HaeIII GGCC 3 cut(s) 17, 129, 215
HapII CCGG 1 cut(s) 155
Hin1II CATG 1 cut(s) 222
HpaII CCGG 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 38
Hpy188I TCNGA 2 cut(s) 84, 192
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 1 cut(s) 38
HpyCH4III ACNGT 1 cut(s) 145
HpyF3I CTNAG 2 cut(s) 162, 200
Hsp92II CATG 1 cut(s) 222
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 5 cut(s) 102, 147, 149, 168, 190
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 1 cut(s) 19
MaeI CTAG 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 104
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 131
MnlI CCTC 2 cut(s) 149, 198
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 1 cut(s) 155
NdeII GATC 1 cut(s) 79
NlaIII CATG 1 cut(s) 222
NlaIV GGNNCC 2 cut(s) 129, 185
PaqCI CACCTGC 1 cut(s) 142
PceI AGGCCT 1 cut(s) 215
PkrI GCNGC 2 cut(s) 160, 198
PpuMI RGGWCCY 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 183
PspN4I GGNNCC 2 cut(s) 129, 185
PspOMI GGGCCC 1 cut(s) 127
PspPI GGNCC 4 cut(s) 16, 127, 128, 183
PspPPI RGGWCCY 1 cut(s) 183
SatI GCNGC 2 cut(s) 159, 197
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 4 cut(s) 16, 127, 128, 183
SduI GDGCHC 1 cut(s) 131
SetI ASST 4 cut(s) 43, 136, 163, 185
SfaNI GCATC 1 cut(s) 19
SgeI CNNG 8 cut(s) 45, 101, 121, 146, 154, 167, 176, 189
SinI GGWCC 1 cut(s) 183
SseBI AGGCCT 1 cut(s) 215
SsiI CCGC 3 cut(s) 100, 120, 197
SspMI CTAG 1 cut(s) 33
StuI AGGCCT 1 cut(s) 215
TaaI ACNGT 1 cut(s) 145
TauI GCSGC 1 cut(s) 199
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 183
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.