Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

35080100 .. 35081732

Gene Structure 1633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013649

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTCTTCACTGGAAGAAACATCCCCCGTTGTGAACTCAGATCACAAGAAGCCTTCACTCGATATTGCAGGTAGCCTTATGGTCCCTGCATTGGATGAAAAGCAGAAGCATATCCCAGATGAATATGAGAAGGAAGACGACTCAAAGCCAAGACATCCGCACACATGTTCCGCTGCTGAAGAAGAATTTTGCATCCATATCGCCGATGTCACTAAAAGACCATGCGGCACATGCGCACACCTGTACAACGTCGGTCCAGACAACAAAAAGAGATGCGACCTTTTTGAAGAAATCAGTTTCCCAAAAGAGTCTACTTGCTTGAGCAAGGAGGTCTACTCATTGGGAAACACTGATATTGCTGGAAAGTTCCCTTTTATTGGGCTCCTCAGTGGTCTCTACTTGCCTAATGATGTTGTAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.54

Weight (kDa)

5.0

Isoelectric Point (pI)

55.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	235
Acc36I	ACCTGC	1 cut(s)	59
AccI	GTMKAC	2 cut(s)	311, 333
AciI	CCGC	3 cut(s)	158, 171, 225
AcsI	RAATTY	1 cut(s)	185
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	2 cut(s)	91, 377
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	287
Alw26I	GTCTC	1 cut(s)	398
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	2 cut(s)	82, 254
AvaII	GGWCC	2 cut(s)	82, 254
BanII	GRGCYC	1 cut(s)	384
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	160
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BcoDI	GTCTC	1 cut(s)	398
BfuAI	ACCTGC	1 cut(s)	59
BisI	GCNGC	2 cut(s)	174, 226
BlsI	GCNGC	2 cut(s)	175, 227
Bme18I	GGWCC	2 cut(s)	82, 254
BmgT120I	GGNCC	2 cut(s)	82, 254
BmiI	GGNNCC	2 cut(s)	84, 383
BmsI	GCATC	2 cut(s)	201, 263
BpiI	GAAGAC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	320, 352
BpuEI	CTTGAG	1 cut(s)	340
BsaI	GGTCTC	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 377
Bse1I	ACTGG	1 cut(s)	15
BseGI	GGATG	4 cut(s)	20, 100, 154, 192
BseLI	CCNNNNNNNGG	2 cut(s)	91, 377
BseMII	CTCAG	2 cut(s)	51, 400
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	91, 377
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	68
Bso31I	GGTCTC	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	40
BspACI	CCGC	3 cut(s)	158, 171, 225
BspCNI	CTCAG	2 cut(s)	50, 399
BspLI	GGNNCC	2 cut(s)	84, 383
BspMI	ACCTGC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	398
BsrGI	TGTACA	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	15
BssMI	GATC	1 cut(s)	40
BstAUI	TGTACA	1 cut(s)	243
BstDEI	CTNAG	2 cut(s)	37, 386
BstF5I	GGATG	4 cut(s)	20, 100, 154, 192
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstNSI	RCATGY	2 cut(s)	168, 234
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	141
BtsCI	GGATG	4 cut(s)	20, 100, 154, 192
BtsIMutI	CAGTG	3 cut(s)	8, 348, 394
BveI	ACCTGC	1 cut(s)	59
CfoI	GCGC	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	82, 254
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	3 cut(s)	165, 222, 231
CviJI	RGCY	4 cut(s)	52, 75, 148, 382
CviKI_1	RGCY	4 cut(s)	52, 75, 148, 382
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	2 cut(s)	37, 386
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	398
Eco47I	GGWCC	2 cut(s)	82, 254
Eco57I	CTGAAG	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	384
FaeI	CATG	3 cut(s)	168, 225, 234
FaiI	YATR	7 cut(s)	80, 111, 126, 166, 198, 223, 232
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	3 cut(s)	164, 221, 230
FblI	GTMKAC	2 cut(s)	311, 333
Fnu4HI	GCNGC	2 cut(s)	174, 226
FokI	GGATG	4 cut(s)	7, 107, 141, 179
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	2 cut(s)	174, 226
FspAI	RTGCGCAY	1 cut(s)	235
FspI	TGCGCA	1 cut(s)	235
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	2 cut(s)	174, 226
HhaI	GCGC	1 cut(s)	236
Hin1II	CATG	3 cut(s)	168, 225, 234
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HinfI	GANTC	2 cut(s)	140, 308
Hpy166II	GTNNAC	3 cut(s)	34, 312, 334
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	3 cut(s)	34, 312, 334
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	2 cut(s)	63, 124
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	3 cut(s)	68, 89, 192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	2 cut(s)	37, 386
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	168, 225, 234
HspAI	GCGC	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	387
LpnPI	CCDG	6 cut(s)	54, 99, 129, 254, 270, 345
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	2 cut(s)	201, 263
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	5 cut(s)	26, 146, 191, 194, 299
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	1 cut(s)	185
MlyI	GAGTC	2 cut(s)	134, 317
MnlI	CCTC	2 cut(s)	322, 395
MspA1I	CMGCKG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	231
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	3 cut(s)	168, 225, 234
NlaIV	GGNNCC	2 cut(s)	84, 383
NmuCI	GTSAC	1 cut(s)	208
NsbI	TGCGCA	1 cut(s)	235
NspI	RCATGY	2 cut(s)	168, 234
PciI	ACATGT	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	175, 227
PleI	GAGTC	2 cut(s)	134, 316
PpsI	GAGTC	2 cut(s)	134, 316
PscI	ACATGT	1 cut(s)	164
PspN4I	GGNNCC	2 cut(s)	84, 383
PspPI	GGNCC	2 cut(s)	82, 254
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SatI	GCNGC	2 cut(s)	174, 226
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	2 cut(s)	82, 254
SchI	GAGTC	2 cut(s)	134, 317
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	5 cut(s)	73, 243, 252, 282, 333
SfaNI	GCATC	2 cut(s)	201, 263
SinI	GGWCC	2 cut(s)	82, 254
SmlI	CTYRAG	1 cut(s)	319
SmoI	CTYRAG	1 cut(s)	319
Sse9I	AATT	1 cut(s)	185
SsiI	CCGC	3 cut(s)	158, 171, 225
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	60
TaqII	GACCGA	1 cut(s)	242
TasI	AATT	1 cut(s)	185
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	1 cut(s)	228
TscAI	CASTG	3 cut(s)	15, 355, 394
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	111, 135
TspRI	CASTG	3 cut(s)	15, 355, 394
VpaK11BI	GGWCC	2 cut(s)	82, 254
XapI	RAATTY	1 cut(s)	185
XceI	RCATGY	2 cut(s)	168, 234
XmiI	GTMKAC	2 cut(s)	311, 333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.