Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

26693847 .. 26694502

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g31811.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGGCCAATGGGCAGTGTTTATGATGTCTAACTCTAAAGAATCAGTTGTGGAGCATGAAGCTGTTCTAAAGAATGCTATGGTGGATGTTGAAGAAGCAAGCCAACACCGACTAAGCCCCAAACCAGATGTGGAGCATGAAGTTGTTCTGGAGAAGGAAGTCAACACCGTGCAAACTCATCAGTGTTCTGCTGCGGTAGAAGGATTTTGCACTCACATAGCCGATGTTACTAAAAGACCATGCGACACTTGCGCACACTTGTACAACGTTGGACTAGACAACGTAAAGAGATGCAGTTGTGGATTGTGCTACTGGGAAAATGAAATGCATCACTTTGAAGACGGGAATTCCAATTCCCCTCCAACAGGCTATTGGTGGTGGCCTTCAGACCCTGAATTCTCTCTAGATATTGATGATTTTCACCAAGCCAGTGCTCTATGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

16.86

Weight (kDa)

4.74

Isoelectric Point (pI)

35.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	253
AciI	CCGC	1 cut(s)	194
AclI	AACGTT	1 cut(s)	267
AcsI	RAATTY	2 cut(s)	346, 395
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgsI	TTSAA	2 cut(s)	92, 338
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
Alw21I	GWGCWC	1 cut(s)	436
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	2 cut(s)	4, 380
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	2 cut(s)	346, 395
Asp700I	GAANNNNTTC	2 cut(s)	63, 144
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	413
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	436
BbvI	GCAGC	1 cut(s)	178
BfaI	CTAG	2 cut(s)	275, 404
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	4
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	2 cut(s)	281, 337
BmuI	ACTGGG	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse1I	ACTGG	2 cut(s)	317, 429
BseGI	GGATG	2 cut(s)	91, 447
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseNI	ACTGG	2 cut(s)	317, 429
BseXI	GCAGC	1 cut(s)	178
BshFI	GGCC	2 cut(s)	6, 382
BsiHKAI	GWGCWC	1 cut(s)	436
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmI	GAATGC	1 cut(s)	79
BsnI	GGCC	2 cut(s)	6, 382
Bsp1286I	GDGCHC	1 cut(s)	436
Bsp1407I	TGTACA	1 cut(s)	261
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	2 cut(s)	6, 382
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	2 cut(s)	317, 429
Bst4CI	ACNGT	1 cut(s)	169
BstAUI	TGTACA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	1 cut(s)	113
BstENI	CCTNNNNNAGG	1 cut(s)	363
BstF5I	GGATG	2 cut(s)	91, 447
BstHHI	GCGC	1 cut(s)	254
BstMWI	GCNNNNNNNGC	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	178
BstV2I	GAAGAC	1 cut(s)	345
BsuRI	GGCC	2 cut(s)	6, 382
BtsCI	GGATG	2 cut(s)	91, 447
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	3 cut(s)	21, 188, 436
Cac8I	GCNNGC	1 cut(s)	100
CaiI	CAGNNNCTG	1 cut(s)	392
CfoI	GCGC	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	3 cut(s)	56, 137, 240
CviJI	RGCY	8 cut(s)	6, 62, 102, 117, 221, 369, 382, 428
CviKI_1	RGCY	8 cut(s)	6, 62, 102, 117, 221, 369, 382, 428
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	113
Eco57I	CTGAAG	1 cut(s)	369
EcoNI	CCTNNNNNAGG	1 cut(s)	363
EcoRI	GAATTC	2 cut(s)	346, 395
EcoT22I	ATGCAT	1 cut(s)	330
FaeI	CATG	3 cut(s)	59, 140, 243
FaiI	YATR	7 cut(s)	23, 57, 80, 138, 218, 241, 439
FatI	CATG	3 cut(s)	55, 136, 239
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	2 cut(s)	275, 404
FspI	TGCGCA	1 cut(s)	253
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	1 cut(s)	192
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	6, 382
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	3 cut(s)	59, 140, 243
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	1 cut(s)	41
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	2 cut(s)	149, 404
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	3 cut(s)	148, 194, 393
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4IV	ACGT	2 cut(s)	267, 282
HpyCH4V	TGCA	4 cut(s)	172, 210, 294, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	249
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	2 cut(s)	267, 282
Hsp92II	CATG	3 cut(s)	59, 140, 243
HspAI	GCGC	1 cut(s)	252
LmnI	GCTCC	2 cut(s)	52, 133
LpnPI	CCDG	6 cut(s)	134, 138, 298, 351, 405, 442
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	2 cut(s)	281, 337
MaeI	CTAG	2 cut(s)	275, 404
MaeII	ACGT	2 cut(s)	267, 282
MaeIII	GTNAC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	104, 350
MhlI	GDGCHC	1 cut(s)	436
MluCI	AATT	3 cut(s)	346, 352, 395
MmeI	TCCRAC	2 cut(s)	250, 386
MnlI	CCTC	1 cut(s)	369
Mph1103I	ATGCAT	1 cut(s)	330
MroXI	GAANNNNTTC	2 cut(s)	63, 144
Mva1269I	GAATGC	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	249
NlaIII	CATG	3 cut(s)	59, 140, 243
NsbI	TGCGCA	1 cut(s)	253
NsiI	ATGCAT	1 cut(s)	330
PctI	GAATGC	1 cut(s)	79
PdmI	GAANNNNTTC	2 cut(s)	63, 144
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	193
Psp1406I	AACGTT	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	392
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SatI	GCNGC	1 cut(s)	192
Sau96I	GGNCC	1 cut(s)	4
SduI	GDGCHC	1 cut(s)	436
SetI	ASST	3 cut(s)	64, 270, 285
SfaNI	GCATC	2 cut(s)	281, 337
Sse9I	AATT	3 cut(s)	346, 352, 395
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	2 cut(s)	275, 404
TaaI	ACNGT	1 cut(s)	169
TaiI	ACGT	2 cut(s)	270, 285
TasI	AATT	3 cut(s)	346, 352, 395
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	41
TscAI	CASTG	3 cut(s)	21, 188, 436
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	3 cut(s)	72, 153, 336
TspRI	CASTG	3 cut(s)	21, 188, 436
XagI	CCTNNNNNAGG	1 cut(s)	363
XapI	RAATTY	2 cut(s)	346, 395
XbaI	TCTAGA	1 cut(s)	403
XcmI	CCANNNNNNNNNTGG	2 cut(s)	127, 369
XmnI	GAANNNNTTC	2 cut(s)	63, 144
XspI	CTAG	2 cut(s)	275, 404
Zsp2I	ATGCAT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.