Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

36480265 .. 36481155

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCAAACATCTTACCAAGTCTCGGTTTAGCTCCGAGAAACCAGGAGCTTTCGCTCACCAAGTTTTTCCCCCAAAACCCTAGCGCCGCGACCTCCGTTTTGCGTCAATTCTCCACAGCTTTCAACCTTTCAATCCCGCCTACTTATCTCACAACCTCCATGGCTTCTGCTGATGCTGCTACGGCAAGTTTCGATGACTTTGGCTACTGGCGGGACTGCTCCTTCCGTCCAATGGAGCCGATTGGTCATGGTGGCTGTATGGCGGCGACTGTGCGACTTCGGCTGGGTCCGTTGGCGCCGTTTGGACCAAATGACGACTGGAATTTGTGGCTGCCGGAGATTCGAAGAAGGTGGCCGGCAAAGGCAGCGTTGCTAGCTTGGAAGAGGAAAGGGATATGGGCTTGGATCTGCGCATTTGGGCCTGGGTTTGAGCTTACCCCTTTATGCGGGCTTTTTGGTGGACCTGAGCCAAAGCTTGCCCATAAATTATCTACTCCGTCTCACATGACATCCTCAAGGTCTGATCGGGGAGAGGTTAGCCCTACTACTAAGGGCAAGGAGGTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

20.66

Weight (kDa)

9.42

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	412
AccB1I	GGYRCC	1 cut(s)	295
AccII	CGCG	1 cut(s)	89
AciI	CCGC	5 cut(s)	87, 137, 211, 263, 447
AclWI	GGATC	1 cut(s)	413
AcoI	YGGCCR	1 cut(s)	353
AcsI	RAATTY	1 cut(s)	322
AcyI	GRCGYC	1 cut(s)	296
AfiI	CCNNNNNNNGG	3 cut(s)	23, 232, 446
AgsI	TTSAA	2 cut(s)	124, 132
AjnI	CCWGG	2 cut(s)	42, 421
AluBI	AGCT	7 cut(s)	32, 49, 119, 377, 433, 475, 566
AluI	AGCT	7 cut(s)	32, 49, 119, 377, 433, 475, 566
Alw26I	GTCTC	2 cut(s)	26, 504
AlwI	GGATC	1 cut(s)	413
AoxI	GGCC	2 cut(s)	353, 419
ApeKI	GCWGC	3 cut(s)	176, 331, 365
ApoI	RAATTY	1 cut(s)	322
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
AspLEI	GCGC	3 cut(s)	86, 298, 413
AspS9I	GGNCC	4 cut(s)	287, 305, 419, 461
AsuHPI	GGTGA	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	343
AsuNHI	GCTAGC	1 cut(s)	373
AvaII	GGWCC	3 cut(s)	287, 305, 461
BanI	GGYRCC	1 cut(s)	295
BbvI	GCAGC	3 cut(s)	163, 318, 377
BceAI	ACGGC	2 cut(s)	198, 283
BciT130I	CCWGG	2 cut(s)	44, 423
BcoDI	GTCTC	2 cut(s)	26, 504
BfaI	CTAG	2 cut(s)	81, 374
BfoI	RGCGCY	2 cut(s)	87, 299
BisI	GCNGC	5 cut(s)	87, 177, 264, 332, 366
BlsI	GCNGC	5 cut(s)	88, 178, 265, 333, 367
Bme1390I	CCNGG	2 cut(s)	44, 423
Bme18I	GGWCC	3 cut(s)	287, 305, 461
BmgT120I	GGNCC	4 cut(s)	287, 305, 419, 461
BmiI	GGNNCC	3 cut(s)	237, 288, 297
BmrFI	CCNGG	2 cut(s)	44, 423
BmsI	GCATC	1 cut(s)	163
BmtI	GCTAGC	1 cut(s)	377
Bpu10I	CCTNAGC	1 cut(s)	465
Bpu14I	TTCGAA	1 cut(s)	343
BpuEI	CTTGAG	1 cut(s)	499
BsaHI	GRCGYC	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	159, 422
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 232, 446
Bse118I	RCCGGY	1 cut(s)	355
Bse1I	ACTGG	2 cut(s)	212, 323
BseBI	CCWGG	2 cut(s)	44, 423
BseDI	CCNNGG	2 cut(s)	159, 422
BseGI	GGATG	1 cut(s)	509
BseLI	CCNNNNNNNGG	3 cut(s)	23, 232, 446
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	2 cut(s)	212, 323
BseXI	GCAGC	3 cut(s)	163, 318, 377
BseYI	CCCAGC	1 cut(s)	283
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	2 cut(s)	355, 421
BshNI	GGYRCC	1 cut(s)	295
BsiSI	CCGG	2 cut(s)	335, 356
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	3 cut(s)	23, 232, 446
BsmAI	GTCTC	2 cut(s)	26, 504
BsmBI	CGTCTC	1 cut(s)	504
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	355, 421
Bsp119I	TTCGAA	1 cut(s)	343
Bsp143I	GATC	2 cut(s)	405, 523
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	5 cut(s)	87, 137, 211, 263, 447
BspANI	GGCC	2 cut(s)	355, 421
BspCNI	CTCAG	1 cut(s)	457
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	3 cut(s)	237, 288, 297
BspOI	GCTAGC	1 cut(s)	377
BspPI	GGATC	1 cut(s)	413
BspT104I	TTCGAA	1 cut(s)	343
BspT107I	GGYRCC	1 cut(s)	295
BsrFI	RCCGGY	1 cut(s)	355
BsrI	ACTGG	2 cut(s)	212, 323
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	2 cut(s)	159, 422
BssMI	GATC	2 cut(s)	405, 523
BssNI	GRCGYC	1 cut(s)	296
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	2 cut(s)	44, 423
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	377
BstACI	GRCGYC	1 cut(s)	296
BstBI	TTCGAA	1 cut(s)	343
BstC8I	GCNNGC	4 cut(s)	357, 375, 449, 477
BstDEI	CTNAG	2 cut(s)	465, 549
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	509
BstFNI	CGCG	1 cut(s)	89
BstH2I	RGCGCY	2 cut(s)	87, 299
BstHHI	GCGC	3 cut(s)	86, 298, 413
BstKTI	GATC	2 cut(s)	408, 526
BstMAI	GTCTC	2 cut(s)	26, 504
BstMBI	GATC	2 cut(s)	405, 523
BstMWI	GCNNNNNNNGC	5 cut(s)	176, 182, 280, 365, 374
BstNI	CCWGG	2 cut(s)	44, 423
BstSCI	CCNGG	2 cut(s)	42, 421
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	3 cut(s)	163, 318, 377
BstX2I	RGATCY	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	405
BsuRI	GGCC	2 cut(s)	355, 421
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	509
Cac8I	GCNNGC	4 cut(s)	357, 375, 449, 477
CfoI	GCGC	3 cut(s)	86, 298, 413
Cfr10I	RCCGGY	1 cut(s)	355
Cfr13I	GGNCC	4 cut(s)	287, 305, 419, 461
CseI	GACGC	1 cut(s)	92
CviAII	CATG	3 cut(s)	160, 248, 505
DdeI	CTNAG	2 cut(s)	465, 549
DinI	GGCGCC	1 cut(s)	297
DpnI	GATC	2 cut(s)	407, 525
DpnII	GATC	2 cut(s)	405, 523
EaeI	YGGCCR	1 cut(s)	353
Eam1104I	CTCTTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	377
Eco130I	CCWWGG	1 cut(s)	159
Eco47I	GGWCC	3 cut(s)	287, 305, 461
EcoRII	CCWGG	2 cut(s)	42, 421
EcoT14I	CCWWGG	1 cut(s)	159
EgeI	GGCGCC	1 cut(s)	297
EheI	GGCGCC	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	159
Esp3I	CGTCTC	1 cut(s)	504
FaeI	CATG	3 cut(s)	163, 251, 508
FaiI	YATR	7 cut(s)	161, 249, 260, 397, 445, 483, 506
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	3 cut(s)	159, 247, 504
FauI	CCCGC	3 cut(s)	144, 204, 440
Fnu4HI	GCNGC	5 cut(s)	87, 177, 264, 332, 366
FokI	GGATG	1 cut(s)	496
Fsp4HI	GCNGC	5 cut(s)	87, 177, 264, 332, 366
FspBI	CTAG	2 cut(s)	81, 374
FspI	TGCGCA	1 cut(s)	412
GlaI	GCGC	3 cut(s)	85, 297, 412
GluI	GCNGC	5 cut(s)	87, 177, 264, 332, 366
GsaI	CCCAGC	1 cut(s)	287
HaeII	RGCGCY	2 cut(s)	87, 299
HaeIII	GGCC	2 cut(s)	355, 421
HapII	CCGG	2 cut(s)	335, 356
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	3 cut(s)	86, 298, 413
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	3 cut(s)	163, 251, 508
Hin6I	GCGC	3 cut(s)	84, 296, 411
HinP1I	GCGC	3 cut(s)	84, 296, 411
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	1 cut(s)	340
HpaII	CCGG	2 cut(s)	335, 356
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	2 cut(s)	36, 523
Hpy8I	GTNNAC	1 cut(s)	461
HpyAV	CCTTC	2 cut(s)	232, 342
HpyCH4III	ACNGT	1 cut(s)	271
HpyF10VI	GCNNNNNNNGC	5 cut(s)	176, 182, 280, 365, 374
HpyF3I	CTNAG	2 cut(s)	465, 549
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	3 cut(s)	163, 251, 508
HspAI	GCGC	3 cut(s)	84, 296, 411
KasI	GGCGCC	1 cut(s)	295
KroI	GCCGGC	1 cut(s)	355
KroNI	GCCGGC	1 cut(s)	357
Kzo9I	GATC	2 cut(s)	405, 523
LmnI	GCTCC	4 cut(s)	37, 46, 224, 235
Lsp1109I	GCAGC	3 cut(s)	163, 318, 377
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	2 cut(s)	81, 374
MalI	GATC	2 cut(s)	407, 525
MboI	GATC	2 cut(s)	405, 523
MboII	GAAGA	2 cut(s)	357, 394
MflI	RGATCY	1 cut(s)	405
MluCI	AATT	3 cut(s)	107, 322, 485
Mly113I	GGCGCC	1 cut(s)	296
MnlI	CCTC	6 cut(s)	103, 166, 378, 523, 526, 553
MroNI	GCCGGC	1 cut(s)	355
MseI	TTAA	1 cut(s)	568
MspI	CCGG	2 cut(s)	335, 356
MspR9I	CCNGG	2 cut(s)	44, 423
MvaI	CCWGG	2 cut(s)	44, 423
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	5 cut(s)	176, 182, 280, 365, 374
NaeI	GCCGGC	1 cut(s)	357
NarI	GGCGCC	1 cut(s)	296
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	2 cut(s)	405, 523
NgoMIV	GCCGGC	1 cut(s)	355
NheI	GCTAGC	1 cut(s)	373
NlaIII	CATG	3 cut(s)	163, 251, 508
NlaIV	GGNNCC	3 cut(s)	237, 288, 297
NsbI	TGCGCA	1 cut(s)	412
NspV	TTCGAA	1 cut(s)	343
PdiI	GCCGGC	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	340
PkrI	GCNGC	5 cut(s)	88, 178, 265, 333, 367
PluTI	GGCGCC	1 cut(s)	299
Psp6I	CCWGG	2 cut(s)	42, 421
PspFI	CCCAGC	1 cut(s)	283
PspGI	CCWGG	2 cut(s)	42, 421
PspN4I	GGNNCC	3 cut(s)	237, 288, 297
PspPI	GGNCC	4 cut(s)	287, 305, 419, 461
PsuI	RGATCY	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	568
SatI	GCNGC	5 cut(s)	87, 177, 264, 332, 366
Sau3AI	GATC	2 cut(s)	405, 523
Sau96I	GGNCC	4 cut(s)	287, 305, 419, 461
ScrFI	CCNGG	2 cut(s)	44, 423
SfaNI	GCATC	1 cut(s)	163
SfoI	GGCGCC	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	343
SinI	GGWCC	3 cut(s)	287, 305, 461
SmlI	CTYRAG	1 cut(s)	514
SmoI	CTYRAG	1 cut(s)	514
Sse9I	AATT	3 cut(s)	107, 322, 485
SsiI	CCGC	5 cut(s)	87, 137, 211, 263, 447
SspDI	GGCGCC	1 cut(s)	295
SspMI	CTAG	2 cut(s)	81, 374
StyD4I	CCNGG	2 cut(s)	42, 421
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	271
TaqI	TCGA	2 cut(s)	192, 343
TasI	AATT	3 cut(s)	107, 322, 485
TauI	GCSGC	2 cut(s)	89, 266
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	1 cut(s)	568
Tru9I	TTAA	1 cut(s)	568
TseI	GCWGC	3 cut(s)	176, 331, 365
TspGWI	ACGGA	4 cut(s)	85, 215, 279, 486
VpaK11BI	GGWCC	3 cut(s)	287, 305, 461
XapI	RAATTY	1 cut(s)	322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	315
XspI	CTAG	2 cut(s)	81, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.