Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Reverse (-)

13354146 .. 13361250

Gene Structure 7105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10211.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCCCACCTCTAATCTAATAGAAGCCTTTTGGTGGCTCAGCGGCTTCGGAGGGGATGGGTACTCCGAGGTTAAGCATGTTGATGCTAGAGCAATCCCAGGATGGGTGACCTCCTGGGAAGCTGCTCCTGAGTTGCCGGAAACAAAACCAACTTGGAGTTCTGAAGAATACGGGGAGGCTATGGCGAAATTCCGGCAAGTCACCGGAATCCGACTAGTATTTCTGGCAAGTCGCCGGAATTCCTATCGAGATTCCGGCGAGGCAGCTATTCCGGTAGAACCCTTGAAGGACCCATTCCGCCGTAACACGATATTGTCCGCTTTGGGCCCACCGGCCCTCACGGTTTTGTTTCCGGCAGCTCAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.51

Weight (kDa)

5.21

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	42, 298, 318
AcsI	RAATTY	2 cut(s)	188, 238
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	2 cut(s)	33, 103
AgsI	TTSAA	1 cut(s)	286
AhlI	ACTAGT	1 cut(s)	214
AjnI	CCWGG	2 cut(s)	97, 113
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AluBI	AGCT	3 cut(s)	122, 266, 359
AluI	AGCT	3 cut(s)	122, 266, 359
AoxI	GGCC	2 cut(s)	325, 333
ApaI	GGGCCC	1 cut(s)	329
ApeKI	GCWGC	3 cut(s)	122, 263, 356
ApoI	RAATTY	2 cut(s)	188, 238
AspS9I	GGNCC	4 cut(s)	289, 325, 326, 334
AsuHPI	GGTGA	2 cut(s)	118, 193
AvaII	GGWCC	1 cut(s)	289
BaeGI	GKGCMC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	329
BbvI	GCAGC	2 cut(s)	109, 275
BccI	CCATC	2 cut(s)	50, 96
BceAI	ACGGC	1 cut(s)	285
BciT130I	CCWGG	2 cut(s)	99, 115
BcuI	ACTAGT	1 cut(s)	214
BfaI	CTAG	2 cut(s)	87, 215
BisI	GCNGC	4 cut(s)	43, 123, 264, 357
BlpI	GCTNAGC	1 cut(s)	38
BlsI	GCNGC	4 cut(s)	44, 124, 265, 358
Bme1390I	CCNGG	2 cut(s)	99, 115
Bme18I	GGWCC	1 cut(s)	289
BmgT120I	GGNCC	4 cut(s)	289, 325, 326, 334
BmiI	GGNNCC	2 cut(s)	291, 327
BmrFI	CCNGG	2 cut(s)	99, 115
BmsI	GCATC	1 cut(s)	73
Bpu10I	CCTNAGC	1 cut(s)	360
Bpu1102I	GCTNAGC	1 cut(s)	38
BsaJI	CCNNGG	3 cut(s)	66, 97, 114
BsaWI	WCCGGW	2 cut(s)	203, 271
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 103
Bse118I	RCCGGY	1 cut(s)	331
BseBI	CCWGG	2 cut(s)	99, 115
BseDI	CCNNGG	3 cut(s)	66, 97, 114
BseGI	GGATG	2 cut(s)	61, 107
BseLI	CCNNNNNNNGG	2 cut(s)	33, 103
BseMII	CTCAG	2 cut(s)	52, 120
BseSI	GKGCMC	1 cut(s)	329
BseXI	GCAGC	2 cut(s)	109, 275
BshFI	GGCC	2 cut(s)	327, 335
BsiSI	CCGG	8 cut(s)	137, 193, 204, 235, 255, 272, 332, 353
BslI	CCNNNNNNNGG	2 cut(s)	33, 103
BsnI	GGCC	2 cut(s)	327, 335
Bsp120I	GGGCCC	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp1720I	GCTNAGC	1 cut(s)	38
BspACI	CCGC	3 cut(s)	42, 298, 318
BspANI	GGCC	2 cut(s)	327, 335
BspCNI	CTCAG	2 cut(s)	51, 121
BspLI	GGNNCC	2 cut(s)	291, 327
BsrFI	RCCGGY	1 cut(s)	331
BssAI	RCCGGY	1 cut(s)	331
BssECI	CCNNGG	3 cut(s)	66, 97, 114
Bst2UI	CCWGG	2 cut(s)	99, 115
Bst4CI	ACNGT	1 cut(s)	343
BstDEI	CTNAG	3 cut(s)	38, 129, 360
BstEII	GGTNACC	1 cut(s)	106
BstF5I	GGATG	2 cut(s)	61, 107
BstNI	CCWGG	2 cut(s)	99, 115
BstNSI	RCATGY	1 cut(s)	80
BstPI	GGTNACC	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	97, 113
BstSLI	GKGCMC	1 cut(s)	329
BstV1I	GCAGC	2 cut(s)	109, 275
BsuRI	GGCC	2 cut(s)	327, 335
BtsCI	GGATG	2 cut(s)	61, 107
Cfr10I	RCCGGY	1 cut(s)	331
Cfr13I	GGNCC	4 cut(s)	289, 325, 326, 334
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	9 cut(s)	26, 37, 45, 122, 179, 266, 327, 335, 359
CviKI_1	RGCY	9 cut(s)	26, 37, 45, 122, 179, 266, 327, 335, 359
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	3 cut(s)	38, 129, 360
EciI	GGCGGA	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	183
Eco91I	GGTNACC	1 cut(s)	106
EcoO109I	RGGNCCY	1 cut(s)	289
EcoO65I	GGTNACC	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	238
EcoRII	CCWGG	2 cut(s)	97, 113
EcoT38I	GRGCYC	1 cut(s)	329
FaeI	CATG	1 cut(s)	80
FaiI	YATR	2 cut(s)	78, 182
FatI	CATG	1 cut(s)	76
Fnu4HI	GCNGC	4 cut(s)	43, 123, 264, 357
FokI	GGATG	2 cut(s)	68, 114
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	4 cut(s)	43, 123, 264, 357
FspBI	CTAG	2 cut(s)	87, 215
GluI	GCNGC	4 cut(s)	43, 123, 264, 357
HaeIII	GGCC	2 cut(s)	327, 335
HapII	CCGG	8 cut(s)	137, 193, 204, 235, 255, 272, 332, 353
Hin1II	CATG	1 cut(s)	80
HinfI	GANTC	2 cut(s)	207, 251
HpaII	CCGG	8 cut(s)	137, 193, 204, 235, 255, 272, 332, 353
HphI	GGTGA	2 cut(s)	118, 193
Hpy188I	TCNGA	4 cut(s)	50, 67, 163, 212
Hpy188III	TCNNGA	3 cut(s)	128, 248, 362
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	1 cut(s)	343
HpyF3I	CTNAG	3 cut(s)	38, 129, 360
Hsp92II	CATG	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	2 cut(s)	109, 275
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	2 cut(s)	87, 215
MaeIII	GTNAC	3 cut(s)	106, 199, 302
MboII	GAAGA	1 cut(s)	176
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	2 cut(s)	188, 238
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	7 cut(s)	19, 44, 61, 121, 169, 253, 347
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	42
MspI	CCGG	8 cut(s)	137, 193, 204, 235, 255, 272, 332, 353
MspR9I	CCNGG	2 cut(s)	99, 115
MvaI	CCWGG	2 cut(s)	99, 115
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	2 cut(s)	291, 327
NmuCI	GTSAC	2 cut(s)	106, 199
NspI	RCATGY	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	207, 251
PkrI	GCNGC	4 cut(s)	44, 124, 265, 358
PpuMI	RGGWCCY	1 cut(s)	289
Psp5II	RGGWCCY	1 cut(s)	289
Psp6I	CCWGG	2 cut(s)	97, 113
PspEI	GGTNACC	1 cut(s)	106
PspGI	CCWGG	2 cut(s)	97, 113
PspN4I	GGNNCC	2 cut(s)	291, 327
PspOMI	GGGCCC	1 cut(s)	325
PspPI	GGNCC	4 cut(s)	289, 325, 326, 334
PspPPI	RGGWCCY	1 cut(s)	289
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	4 cut(s)	43, 123, 264, 357
Sau96I	GGNCC	4 cut(s)	289, 325, 326, 334
ScrFI	CCNGG	2 cut(s)	99, 115
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	6 cut(s)	11, 72, 113, 124, 268, 361
SfaNI	GCATC	1 cut(s)	73
SinI	GGWCC	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	81
SpeI	ACTAGT	1 cut(s)	214
Sse9I	AATT	2 cut(s)	188, 238
SsiI	CCGC	3 cut(s)	42, 298, 318
SspMI	CTAG	2 cut(s)	87, 215
StyD4I	CCNGG	2 cut(s)	97, 113
TaaI	ACNGT	1 cut(s)	343
TaqI	TCGA	1 cut(s)	247
TasI	AATT	2 cut(s)	188, 238
TauI	GCSGC	1 cut(s)	45
TfiI	GAWTC	2 cut(s)	207, 251
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TseFI	GTSAC	2 cut(s)	106, 199
TseI	GCWGC	3 cut(s)	122, 263, 356
Tsp45I	GTSAC	2 cut(s)	106, 199
VpaK11BI	GGWCC	1 cut(s)	289
XapI	RAATTY	2 cut(s)	188, 238
XceI	RCATGY	1 cut(s)	80
XspI	CTAG	2 cut(s)	87, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.