Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

1532001 .. 1534014

Gene Structure 2014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G011500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGATTATGAAAGAGGGACATTATACACGGCAGAGGGGTGTAATCATGATACGATTGATGTGGGTTATATGGGGGAGGTTGAATCAGTGTACGAAAACATTAATGTGACCCCAATTGGGGAATCAGATTTAGGAGGTGAGCGTTTGAAGAAGAGAACCAATGCGGGATCTGGCGATGCTATTCCCTTGCATTTGGACGGTGTACACTTGTATAATTTGAGGGAAGAACCTGTTTTATTAAAGGAGTTTAAAAGTGTAGAAGAAGCTGAAATTTTCTTCAAAGATTATGCAAAGTCAATTGGTTTTGGTTCTGGTGGATATGTGAATGTTAAATTCACAATGAAGGATTTCTACAATAAAAATGACTCAGAAAGGCAGGCATTTTTGGCTGATGGCGATGCAGAGGCTGCACTTGGGTACACGAATGCAAAAGCTGCAACTGATCCAGAGACCTTTATACTAGCCATGAAGCATAAGAAACCTATTTCTGGTGTGACTGATGGTGATGAAGCAATGCAGAACGCTATTGACACTCAAAGATGTGAGAGCATGAACCGATGTATGAAGGATTTACTTCGACGGAATGGTCTGAAGTTTTTTGAATGTATTCCTCAACTTGATAGAGCCTTGCTACGAGTTAGAAACAAATGTGTGATGGACGACTTGAAGGCAAAAAATTCCACACCGGTGCTGACAACCCAATTTCATAGTTTGCAGCAACATGTAGCTACTGTCTACACACAGAGTGTGTTTGAAATAGTTCAGAAGCAGCTGAATTATGTGGGAACACTTATTTGTAAAAGTGCCATACCTTTTGGGGGTTGTTGCAAACTCCCAATATCCAAATATGGTCATGGAGGAAACTGCAGCTGCAAAATGTTTGAATATGGTGGCATACCATGTGCTCATTTGTTATATGTTATGAAAGAGAATGATATGAAGCAGATACCAGAAGGTCTTATTATGAAGAGATGGACTAAATGTGCAAGGTTGGACATTGAAGTTCCAATGCAGGTGCAAAAGAATGAGATTGTTGGTTTACAAGTTGCGAGGTATGGGGCTTTAAGTGGGTTTTGCAACAATTTATGTTATTATGGGTCATTGACAATTGAAGCTTATACGTTGCTTAAGACTGAGTTAGTGAGAATAAGCACTCGGTCTCAAGACACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

391

Amino Acids

43.65

Weight (kDa)

6.28

Isoelectric Point (pI)

32.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1003
AasI	GACNNNNNNGTC	1 cut(s)	585
Acc36I	ACCTGC	1 cut(s)	1003
AccI	GTMKAC	1 cut(s)	735
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	2 cut(s)	175, 437
AcsI	RAATTY	3 cut(s)	270, 332, 676
AcuI	CTGAAG	1 cut(s)	611
AdeI	CACNNNGTG	1 cut(s)	746
AfaI	GTAC	3 cut(s)	92, 204, 419
AfiI	CCNNNNNNNGG	4 cut(s)	117, 118, 488, 818
AflII	CTTAAG	1 cut(s)	1127
AflIII	ACRYGT	1 cut(s)	721
AgeI	ACCGGT	1 cut(s)	685
AgsI	TTSAA	9 cut(s)	83, 148, 280, 602, 667, 755, 884, 1001, 1112
AleI	CACNNNNGTG	1 cut(s)	686
AluBI	AGCT	6 cut(s)	266, 434, 728, 772, 870, 1115
AluI	AGCT	6 cut(s)	266, 434, 728, 772, 870, 1115
Alw21I	GWGCWC	1 cut(s)	907
Alw26I	GTCTC	2 cut(s)	443, 1164
AlwI	GGATC	2 cut(s)	175, 437
AlwNI	CAGNNNCTG	1 cut(s)	407
ApeKI	GCWGC	6 cut(s)	407, 434, 715, 769, 867, 870
ApoI	RAATTY	3 cut(s)	270, 332, 676
AseI	ATTAAT	1 cut(s)	102
AsiGI	ACCGGT	1 cut(s)	685
Asp700I	GAANNNNTTC	3 cut(s)	347, 606, 759
AsuHPI	GGTGA	2 cut(s)	149, 515
BarI	GAAGNNNNNNTAC	2 cut(s)	335, 367
Bbv12I	GWGCWC	1 cut(s)	907
BbvI	GCAGC	6 cut(s)	394, 421, 727, 781, 857, 879
BccI	CCATC	4 cut(s)	386, 494, 649, 966
BceAI	ACGGC	1 cut(s)	45
BcoDI	GTCTC	2 cut(s)	443, 1164
BfaI	CTAG	1 cut(s)	461
BfmI	CTRYAG	1 cut(s)	865
BfrI	CTTAAG	1 cut(s)	1127
BfuAI	ACCTGC	1 cut(s)	1003
BisI	GCNGC	6 cut(s)	408, 435, 716, 770, 868, 871
BlsI	GCNGC	6 cut(s)	409, 436, 717, 771, 869, 872
BmsI	GCATC	2 cut(s)	166, 388
BpuEI	CTTGAG	1 cut(s)	1146
BsaI	GGTCTC	2 cut(s)	443, 1164
BsaWI	WCCGGW	1 cut(s)	685
Bsc4I	CCNNNNNNNGG	4 cut(s)	117, 118, 488, 818
Bse118I	RCCGGY	1 cut(s)	685
Bse3DI	GCAATG	1 cut(s)	519
BseLI	CCNNNNNNNGG	4 cut(s)	117, 118, 488, 818
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	2 cut(s)	381, 1125
BseXI	GCAGC	6 cut(s)	394, 421, 727, 781, 857, 879
BsgI	GTGCAG	1 cut(s)	393
BshTI	ACCGGT	1 cut(s)	685
BsiHKAI	GWGCWC	1 cut(s)	907
BsiSI	CCGG	1 cut(s)	686
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	4 cut(s)	117, 118, 488, 818
BsmAI	GTCTC	2 cut(s)	443, 1164
BsmFI	GGGAC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	430
Bso31I	GGTCTC	2 cut(s)	443, 1164
Bsp1286I	GDGCHC	1 cut(s)	907
Bsp1407I	TGTACA	1 cut(s)	202
Bsp143I	GATC	2 cut(s)	167, 442
BspACI	CCGC	1 cut(s)	164
BspCNI	CTCAG	2 cut(s)	380, 1126
BspHI	TCATGA	1 cut(s)	46
BspMAI	CTGCAG	1 cut(s)	869
BspMI	ACCTGC	1 cut(s)	1003
BspPI	GGATC	2 cut(s)	175, 437
BspTI	CTTAAG	1 cut(s)	1127
BspTNI	GGTCTC	2 cut(s)	443, 1164
BsrDI	GCAATG	1 cut(s)	519
BsrFI	RCCGGY	1 cut(s)	685
BsrGI	TGTACA	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	685
BssMI	GATC	2 cut(s)	167, 442
Bst4CI	ACNGT	2 cut(s)	200, 733
Bst6I	CTCTTC	2 cut(s)	146, 962
BstAFI	CTTAAG	1 cut(s)	1127
BstAPI	GCANNNNNTGC	2 cut(s)	407, 434
BstAUI	TGTACA	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	2 cut(s)	367, 1134
BstKTI	GATC	2 cut(s)	170, 445
BstMAI	GTCTC	2 cut(s)	443, 1164
BstMBI	GATC	2 cut(s)	167, 442
BstMWI	GCNNNNNNNGC	3 cut(s)	386, 407, 434
BstNSI	RCATGY	1 cut(s)	725
BstSFI	CTRYAG	1 cut(s)	865
BstV1I	GCAGC	6 cut(s)	394, 421, 727, 781, 857, 879
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
BtgZI	GCGATG	2 cut(s)	189, 411
BtsIMutI	CAGTG	1 cut(s)	93
BveI	ACCTGC	1 cut(s)	1003
Cac8I	GCNNGC	1 cut(s)	378
CaiI	CAGNNNCTG	1 cut(s)	407
CciI	TCATGA	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	685
Csp6I	GTAC	3 cut(s)	91, 203, 418
CspAI	ACCGGT	1 cut(s)	685
CviAII	CATG	6 cut(s)	47, 466, 550, 722, 854, 900
CviQI	GTAC	3 cut(s)	91, 203, 418
DdeI	CTNAG	2 cut(s)	367, 1134
DpnI	GATC	2 cut(s)	169, 444
DpnII	GATC	2 cut(s)	167, 442
DraI	TTTAAA	1 cut(s)	250
DraIII	CACNNNGTG	1 cut(s)	746
DrdI	GACNNNNNNGTC	1 cut(s)	585
DseDI	GACNNNNNNGTC	1 cut(s)	585
Eam1104I	CTCTTC	2 cut(s)	146, 962
EarI	CTCTTC	2 cut(s)	146, 962
Eco31I	GGTCTC	2 cut(s)	443, 1164
Eco57I	CTGAAG	1 cut(s)	611
FaeI	CATG	6 cut(s)	50, 469, 553, 725, 857, 903
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	6 cut(s)	46, 465, 549, 721, 853, 899
FauI	CCCGC	1 cut(s)	157
FblI	GTMKAC	1 cut(s)	735
Fnu4HI	GCNGC	6 cut(s)	408, 435, 716, 770, 868, 871
Fsp4HI	GCNGC	6 cut(s)	408, 435, 716, 770, 868, 871
FspBI	CTAG	1 cut(s)	461
GluI	GCNGC	6 cut(s)	408, 435, 716, 770, 868, 871
HapII	CCGG	1 cut(s)	686
Hin1II	CATG	6 cut(s)	50, 469, 553, 725, 857, 903
HindIII	AAGCTT	1 cut(s)	1113
HinfI	GANTC	3 cut(s)	83, 122, 365
HpaII	CCGG	1 cut(s)	686
HphI	GGTGA	2 cut(s)	149, 515
Hpy166II	GTNNAC	6 cut(s)	91, 203, 205, 420, 736, 1040
Hpy188I	TCNGA	4 cut(s)	127, 370, 591, 765
Hpy188III	TCNNGA	3 cut(s)	47, 446, 1163
Hpy8I	GTNNAC	6 cut(s)	91, 203, 205, 420, 736, 1040
Hpy99I	CGWCG	1 cut(s)	582
HpyAV	CCTTC	4 cut(s)	337, 559, 661, 947
HpyCH4III	ACNGT	2 cut(s)	200, 733
HpyCH4IV	ACGT	1 cut(s)	1121
HpyF10VI	GCNNNNNNNGC	3 cut(s)	386, 407, 434
HpyF3I	CTNAG	2 cut(s)	367, 1134
HpySE526I	ACGT	1 cut(s)	1121
Hsp92II	CATG	6 cut(s)	50, 469, 553, 725, 857, 903
Kzo9I	GATC	2 cut(s)	167, 442
LpnPI	CCDG	9 cut(s)	156, 243, 297, 362, 459, 474, 699, 963, 998
Lsp1109I	GCAGC	6 cut(s)	394, 421, 727, 781, 857, 879
LweI	GCATC	2 cut(s)	166, 388
MaeI	CTAG	1 cut(s)	461
MaeII	ACGT	1 cut(s)	1121
MaeIII	GTNAC	2 cut(s)	106, 493
MalI	GATC	2 cut(s)	169, 444
MboI	GATC	2 cut(s)	167, 442
MboII	GAAGA	6 cut(s)	160, 163, 236, 268, 272, 979
MfeI	CAATTG	3 cut(s)	114, 297, 1107
MflI	RGATCY	1 cut(s)	167
MhlI	GDGCHC	1 cut(s)	907
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	972
MnlI	CCTC	9 cut(s)	8, 28, 70, 128, 213, 397, 621, 851, 1044
MroXI	GAANNNNTTC	3 cut(s)	347, 606, 759
MseI	TTAA	6 cut(s)	102, 239, 249, 330, 1064, 1128
MslI	CAYNNNNRTG	2 cut(s)	104, 686
MspA1I	CMGCKG	2 cut(s)	772, 870
MspCI	CTTAAG	1 cut(s)	1127
MspI	CCGG	1 cut(s)	686
MunI	CAATTG	3 cut(s)	114, 297, 1107
Mva1269I	GAATGC	1 cut(s)	430
MwoI	GCNNNNNNNGC	3 cut(s)	386, 407, 434
NdeII	GATC	2 cut(s)	167, 442
NlaIII	CATG	6 cut(s)	50, 469, 553, 725, 857, 903
NmuCI	GTSAC	2 cut(s)	106, 493
NspI	RCATGY	1 cut(s)	725
OliI	CACNNNNGTG	1 cut(s)	686
PagI	TCATGA	1 cut(s)	46
PaqCI	CACCTGC	1 cut(s)	1003
PciI	ACATGT	1 cut(s)	721
PctI	GAATGC	1 cut(s)	430
PdmI	GAANNNNTTC	3 cut(s)	347, 606, 759
PfeI	GAWTC	2 cut(s)	83, 122
PinAI	ACCGGT	1 cut(s)	685
PkrI	GCNGC	6 cut(s)	409, 436, 717, 771, 869, 872
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PscI	ACATGT	1 cut(s)	721
PshBI	ATTAAT	1 cut(s)	102
PstI	CTGCAG	1 cut(s)	869
PstNI	CAGNNNCTG	1 cut(s)	407
PsuI	RGATCY	1 cut(s)	167
PvuII	CAGCTG	2 cut(s)	772, 870
RsaI	GTAC	3 cut(s)	92, 204, 419
RsaNI	GTAC	3 cut(s)	91, 203, 418
RseI	CAYNNNNRTG	2 cut(s)	104, 686
SaqAI	TTAA	6 cut(s)	102, 239, 249, 330, 1064, 1128
SatI	GCNGC	6 cut(s)	408, 435, 716, 770, 868, 871
Sau3AI	GATC	2 cut(s)	167, 442
SchI	GAGTC	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	907
SfaNI	GCATC	2 cut(s)	166, 388
SfcI	CTRYAG	1 cut(s)	865
SgrAI	CRCCGGYG	1 cut(s)	685
SmiMI	CAYNNNNRTG	2 cut(s)	104, 686
SmlI	CTYRAG	2 cut(s)	1127, 1161
SmoI	CTYRAG	2 cut(s)	1127, 1161
SsiI	CCGC	1 cut(s)	164
SspMI	CTAG	1 cut(s)	461
TaaI	ACNGT	2 cut(s)	200, 733
TaiI	ACGT	1 cut(s)	1124
TaqI	TCGA	1 cut(s)	577
TaqII	GACCGA	1 cut(s)	1146
TatI	WGTACW	1 cut(s)	202
TfiI	GAWTC	2 cut(s)	83, 122
Tru1I	TTAA	6 cut(s)	102, 239, 249, 330, 1064, 1128
Tru9I	TTAA	6 cut(s)	102, 239, 249, 330, 1064, 1128
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	2 cut(s)	106, 493
TseI	GCWGC	6 cut(s)	407, 434, 715, 769, 867, 870
Tsp45I	GTSAC	2 cut(s)	106, 493
TspGWI	ACGGA	1 cut(s)	595
TspRI	CASTG	1 cut(s)	93
Vha464I	CTTAAG	1 cut(s)	1127
VspI	ATTAAT	1 cut(s)	102
XapI	RAATTY	3 cut(s)	270, 332, 676
XceI	RCATGY	1 cut(s)	725
XmiI	GTMKAC	1 cut(s)	735
XmnI	GAANNNNTTC	3 cut(s)	347, 606, 759
XspI	CTAG	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.