FvH4_5g25100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000607
Physical Location & Seq
Reverse (-)
16579825 .. 16580261
437 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g25100.t1

Sequence Viewer

Length: 225 bp
ATGGCTGGTTTGAGTGTTTTGGTTGCTTGTATGTCGAGAACTTGGTGTTTTGAAGAATACAGAGAGGTCGCCGGAAACCGTAAGAATATTCCGGTAAGTCGCTGGAATTTGGCGGCCGATTCTAGCAAAACAGCAGATCTGGCAGAGAGCAGAGAAGATGGTTATTTGGCTAGAGCTCTTGTTCCCAGTGGTGCCTCTATCGGTAAGTTTAGTGAAAAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.07

Weight (kDa)

7.77

Isoelectric Point (pI)

63.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 191
AciI CCGC 1 cut(s) 113
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 1 cut(s) 106
AgsI TTSAA 1 cut(s) 53
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw21I GWGCWC 1 cut(s) 178
AoxI GGCC 1 cut(s) 114
ApoI RAATTY 1 cut(s) 106
BanI GGYRCC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 178
Bbv12I GWGCWC 1 cut(s) 178
BccI CCATC 1 cut(s) 152
BfaI CTAG 2 cut(s) 123, 171
BglII AGATCT 1 cut(s) 136
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 193
BmrI ACTGGG 1 cut(s) 180
BmuI ACTGGG 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 186
BseX3I CGGCCG 1 cut(s) 114
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 1 cut(s) 116
BshNI GGYRCC 1 cut(s) 191
BsiEI CGRYCG 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 178
BsiSI CCGG 2 cut(s) 72, 92
BsnI GGCC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 178
Bsp143I GATC 1 cut(s) 136
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 116
BspLI GGNNCC 1 cut(s) 193
BspT107I GGYRCC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 186
BssMI GATC 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 80
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BstZI CGGCCG 1 cut(s) 114
BsuRI GGCC 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 193
CviJI RGCY 4 cut(s) 5, 116, 170, 176
CviKI_1 RGCY 4 cut(s) 5, 116, 170, 176
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 114
EagI CGGCCG 1 cut(s) 114
Ecl136II GAGCTC 1 cut(s) 176
EclXI CGGCCG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 178
Eco52I CGGCCG 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 178
FaiI YATR 1 cut(s) 32
Fnu4HI GCNGC 1 cut(s) 114
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 2 cut(s) 123, 171
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 116
HapII CCGG 2 cut(s) 72, 92
HinfI GANTC 1 cut(s) 119
HpaII CCGG 2 cut(s) 72, 92
Hpy188III TCNNGA 1 cut(s) 36
HpyCH4III ACNGT 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
Kzo9I GATC 1 cut(s) 136
LpnPI CCDG 5 cut(s) 85, 88, 105, 125, 199
MaeI CTAG 2 cut(s) 123, 171
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 2 cut(s) 65, 167
MflI RGATCY 1 cut(s) 136
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 1 cut(s) 106
MnlI CCTC 2 cut(s) 58, 205
MspI CCGG 2 cut(s) 72, 92
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 1 cut(s) 136
NlaIV GGNNCC 1 cut(s) 193
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 115
Psp124BI GAGCTC 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 193
PsuI RGATCY 1 cut(s) 136
SacI GAGCTC 1 cut(s) 178
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 1 cut(s) 136
SduI GDGCHC 1 cut(s) 178
SetI ASST 2 cut(s) 69, 178
Sse9I AATT 1 cut(s) 106
SsiI CCGC 1 cut(s) 113
SspI AATATT 1 cut(s) 88
SspMI CTAG 2 cut(s) 123, 171
SstI GAGCTC 1 cut(s) 178
TaaI ACNGT 1 cut(s) 80
TaqI TCGA 1 cut(s) 35
TasI AATT 1 cut(s) 106
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 1 cut(s) 119
TscAI CASTG 1 cut(s) 193
TspRI CASTG 1 cut(s) 193
XapI RAATTY 1 cut(s) 106
XspI CTAG 2 cut(s) 123, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.