Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

24265839 .. 24269730

Gene Structure 3892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0258900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGTATCCGAGTTAATAAATGCGAATCCAGTCATCTATGAAAAGAAAGAGCGGCGGGTTCGTAGTGTTCCAAATATTAAAGACCCGGAACACCCTTACTCTTTGGAAGAGCTCAAAGTAATTTCAGAAGATGCAATTGAAGTAGATGATGGCCGTGGTCATGTTAGGGTCACATTTACTCCTACTGTTGAACATTGCAGTATGGCAACAGTTATTGGTCTTTGCATACGTGTTAAACTCTTGAGGAGCCTGCCTTCTCGTTTCAAGGTGGACATTAGGGTGGCACCTGGATCTCATGCAACTGAAGCTGCAGTTAATAAGCAACTGAATGATAAAGAGCGGGTAGCAGCGGCATTGGAAAACCCAAATGTTGTGGAAATGGTTGATGAATGCCTTACTCCTTCATATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

137

Amino Acids

15.32

Weight (kDa)

5.6

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FeS_assembly_P	PF01883	25 - 92	2.5e-07	Iron-sulfur cluster assembly protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	283
AccBSI	CCGCTC	2 cut(s)	52, 340
AciI	CCGC	4 cut(s)	52, 55, 340, 350
AclWI	GGATC	1 cut(s)	298
AcoI	YGGCCR	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	324
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	3 cut(s)	140, 191, 265
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	2 cut(s)	112, 308
AluI	AGCT	2 cut(s)	112, 308
Alw21I	GWGCWC	1 cut(s)	114
AlwI	GGATC	1 cut(s)	298
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	2 cut(s)	308, 347
AsuC2I	CCSGG	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	295, 359
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	138
BciT130I	CCWGG	1 cut(s)	288
BciVI	GTATCC	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	309
BfuI	GTATCC	1 cut(s)	16
BisI	GCNGC	4 cut(s)	53, 309, 348, 351
BlsI	GCNGC	4 cut(s)	54, 310, 349, 352
Bme1390I	CCNGG	2 cut(s)	86, 288
BmiI	GGNNCC	2 cut(s)	248, 285
BmrFI	CCNGG	2 cut(s)	86, 288
BmsI	GCATC	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	262
BpuMI	CCSGG	1 cut(s)	86
BsaAI	YACGTR	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bse1I	ACTGG	1 cut(s)	29
Bse3DI	GCAATG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	154
BseMI	GCAATG	1 cut(s)	193
BseNI	ACTGG	1 cut(s)	29
BseRI	GAGGAG	1 cut(s)	259
BseXI	GCAGC	2 cut(s)	295, 359
BshFI	GGCC	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	290
BspACI	CCGC	4 cut(s)	52, 55, 340, 350
BspANI	GGCC	1 cut(s)	153
BspLI	GGNNCC	2 cut(s)	248, 285
BspMAI	CTGCAG	1 cut(s)	313
BspPI	GGATC	1 cut(s)	298
BspQI	GCTCTTC	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	283
BsrBI	CCGCTC	2 cut(s)	52, 340
BsrDI	GCAATG	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	187, 211
Bst6I	CTCTTC	1 cut(s)	102
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	251
BstDSI	CCRYGG	1 cut(s)	154
BstKTI	GATC	1 cut(s)	293
BstMBI	GATC	1 cut(s)	290
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNI	CCWGG	1 cut(s)	288
BstSCI	CCNGG	2 cut(s)	84, 286
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	295, 359
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
BsuI	GTATCC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	154
Cac8I	GCNNGC	1 cut(s)	251
CspCI	CAANNNNNGTGG	2 cut(s)	354, 389
CviAII	CATG	2 cut(s)	161, 296
CviJI	RGCY	4 cut(s)	112, 153, 249, 308
CviKI_1	RGCY	4 cut(s)	112, 153, 249, 308
DpnI	GATC	1 cut(s)	292
DpnII	GATC	1 cut(s)	290
EaeI	YGGCCR	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Ecl136II	GAGCTC	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	114
Eco53kI	GAGCTC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	2 cut(s)	164, 299
FaiI	YATR	7 cut(s)	39, 162, 203, 227, 297, 406, 408
FatI	CATG	2 cut(s)	160, 295
FauI	CCCGC	2 cut(s)	48, 333
FauNDI	CATATG	1 cut(s)	406
Fnu4HI	GCNGC	4 cut(s)	53, 309, 348, 351
FriOI	GRGCYC	1 cut(s)	114
Fsp4HI	GCNGC	4 cut(s)	53, 309, 348, 351
GluI	GCNGC	4 cut(s)	53, 309, 348, 351
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	2 cut(s)	164, 299
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	1 cut(s)	86
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	2 cut(s)	10, 127
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	2 cut(s)	264, 411
HpyCH4III	ACNGT	2 cut(s)	187, 211
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	5 cut(s)	134, 198, 225, 299, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	2 cut(s)	164, 299
Kzo9I	GATC	1 cut(s)	290
LguI	GCTCTTC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	246
LpnPI	CCDG	5 cut(s)	42, 99, 263, 273, 300
Lsp1109I	GCAGC	2 cut(s)	295, 359
LweI	GCATC	1 cut(s)	121
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	1 cut(s)	292
MbiI	CCGCTC	2 cut(s)	52, 340
MboI	GATC	1 cut(s)	290
MboII	GAAGA	2 cut(s)	119, 140
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	1 cut(s)	290
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	2 cut(s)	120, 135
MnlI	CCTC	1 cut(s)	237
MseI	TTAA	4 cut(s)	14, 78, 234, 315
MslI	CAYNNNNRTG	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	2 cut(s)	86, 288
MunI	CAATTG	1 cut(s)	135
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	1 cut(s)	305
NciI	CCSGG	1 cut(s)	86
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	1 cut(s)	290
NlaIII	CATG	2 cut(s)	164, 299
NlaIV	GGNNCC	2 cut(s)	248, 285
NmuCI	GTSAC	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	102
PctI	GAATGC	1 cut(s)	395
PfeI	GAWTC	1 cut(s)	25
PkrI	GCNGC	4 cut(s)	54, 310, 349, 352
Ppu21I	YACGTR	1 cut(s)	230
Psp124BI	GAGCTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	2 cut(s)	248, 285
PstI	CTGCAG	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	278
SacI	GAGCTC	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	102
SaqAI	TTAA	4 cut(s)	14, 78, 234, 315
SatI	GCNGC	4 cut(s)	53, 309, 348, 351
Sau3AI	GATC	1 cut(s)	290
ScrFI	CCNGG	2 cut(s)	86, 288
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	5 cut(s)	114, 232, 270, 289, 310
SfaNI	GCATC	1 cut(s)	121
SfcI	CTRYAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	241
SmoI	CTYRAG	1 cut(s)	241
Sse9I	AATT	2 cut(s)	120, 135
SsiI	CCGC	4 cut(s)	52, 55, 340, 350
SspI	AATATT	1 cut(s)	76
SstI	GAGCTC	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	84, 286
TaaI	ACNGT	2 cut(s)	187, 211
TaiI	ACGT	1 cut(s)	232
TasI	AATT	2 cut(s)	120, 135
TauI	GCSGC	2 cut(s)	55, 353
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	4 cut(s)	14, 78, 234, 315
Tru9I	TTAA	4 cut(s)	14, 78, 234, 315
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	2 cut(s)	308, 347
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	3 cut(s)	54, 393, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.