FvH4_4g00253

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000607
Physical Location & Seq
Forward (+)
272144 .. 272850
707 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g00253.t1

Sequence Viewer

Length: 282 bp
ATGCCGATCAGTTTGACGAGGGATTTGACCTATGAAGAGGAACCGGTTCAGATTCTTGACCGAAAGGAGCAAGTGCTTAGGAATAAGACAATCCCACTTGTCAAGGTGCTTTGGAGAAGTCATCAAGTAGAAGAAGCTACTTGGGAATCAGAGGAGCAAATGATGCAGCACGGCTTCGGAGGGGATAGATACTCCGAGGTTAAGCATGTTGATGCTAGAGCAATCCCAGGATGGGTGACCTACTGGGAAGCTGCTCCTGGGCTGCCAGAAACAAAACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.86

Weight (kDa)

5.13

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 232
AgeI ACCGGT 1 cut(s) 43
AjnI CCWGG 2 cut(s) 226, 256
AluBI AGCT 2 cut(s) 137, 251
AluI AGCT 2 cut(s) 137, 251
ApeKI GCWGC 3 cut(s) 166, 251, 262
ArsI GACNNNNNNTTYG 2 cut(s) 7, 39
AsiGI ACCGGT 1 cut(s) 43
Asp700I GAANNNNTTC 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 247
BbvI GCAGC 3 cut(s) 178, 238, 249
BccI CCATC 1 cut(s) 225
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 2 cut(s) 228, 258
BfaI CTAG 1 cut(s) 216
BisI GCNGC 3 cut(s) 167, 252, 263
BlsI GCNGC 3 cut(s) 168, 253, 264
Bme1390I CCNGG 2 cut(s) 228, 258
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 2 cut(s) 228, 258
BmrI ACTGGG 1 cut(s) 253
BmsI GCATC 2 cut(s) 153, 202
BmuI ACTGGG 1 cut(s) 253
Bpu10I CCTNAGC 1 cut(s) 77
BsaJI CCNNGG 3 cut(s) 195, 226, 257
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 248
BseBI CCWGG 2 cut(s) 228, 258
BseDI CCNNGG 3 cut(s) 195, 226, 257
BseGI GGATG 1 cut(s) 236
BseLI CCNNNNNNNGG 1 cut(s) 232
BseNI ACTGG 1 cut(s) 248
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 3 cut(s) 178, 238, 249
BshTI ACCGGT 1 cut(s) 43
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 232
Bsp143I GATC 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 1 cut(s) 248
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 3 cut(s) 195, 226, 257
BssMI GATC 1 cut(s) 6
Bst2UI CCWGG 2 cut(s) 228, 258
Bst4CI ACNGT 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 30
BstAPI GCANNNNNTGC 1 cut(s) 163
BstDEI CTNAG 1 cut(s) 77
BstEII GGTNACC 1 cut(s) 235
BstF5I GGATG 1 cut(s) 236
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstNI CCWGG 2 cut(s) 228, 258
BstNSI RCATGY 1 cut(s) 209
BstPI GGTNACC 1 cut(s) 235
BstSCI CCNGG 2 cut(s) 226, 256
BstV1I GCAGC 3 cut(s) 178, 238, 249
BtsCI GGATG 1 cut(s) 236
Cfr10I RCCGGY 1 cut(s) 43
CspAI ACCGGT 1 cut(s) 43
CviAII CATG 1 cut(s) 206
CviJI RGCY 4 cut(s) 137, 174, 251, 262
CviKI_1 RGCY 4 cut(s) 137, 174, 251, 262
DdeI CTNAG 1 cut(s) 77
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco91I GGTNACC 1 cut(s) 235
EcoO65I GGTNACC 1 cut(s) 235
EcoRII CCWGG 2 cut(s) 226, 256
FaeI CATG 1 cut(s) 209
FaiI YATR 2 cut(s) 33, 207
FatI CATG 1 cut(s) 205
Fnu4HI GCNGC 3 cut(s) 167, 252, 263
FokI GGATG 1 cut(s) 243
Fsp4HI GCNGC 3 cut(s) 167, 252, 263
FspBI CTAG 1 cut(s) 216
GluI GCNGC 3 cut(s) 167, 252, 263
HapII CCGG 1 cut(s) 44
Hin1II CATG 1 cut(s) 209
HinfI GANTC 2 cut(s) 52, 146
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 247
Hpy188I TCNGA 4 cut(s) 51, 151, 179, 196
Hpy188III TCNNGA 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 279
HpyCH4V TGCA 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 1 cut(s) 209
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 3 cut(s) 67, 154, 259
LpnPI CCDG 6 cut(s) 57, 213, 229, 240, 243, 270
Lsp1109I GCAGC 3 cut(s) 178, 238, 249
LweI GCATC 2 cut(s) 153, 202
MaeI CTAG 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 235
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 2 cut(s) 47, 143
MnlI CCTC 5 cut(s) 12, 31, 145, 173, 190
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 210
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 2 cut(s) 228, 258
MvaI CCWGG 2 cut(s) 228, 258
MwoI GCNNNNNNNGC 1 cut(s) 163
NdeII GATC 1 cut(s) 6
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 235
NspI RCATGY 1 cut(s) 209
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 2 cut(s) 52, 146
PinAI ACCGGT 1 cut(s) 43
PkrI GCNGC 3 cut(s) 168, 253, 264
Psp6I CCWGG 2 cut(s) 226, 256
PspEI GGTNACC 1 cut(s) 235
PspGI CCWGG 2 cut(s) 226, 256
PspN4I GGNNCC 1 cut(s) 42
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 3 cut(s) 167, 252, 263
Sau3AI GATC 1 cut(s) 6
ScrFI CCNGG 2 cut(s) 228, 258
SetI ASST 6 cut(s) 32, 108, 139, 201, 242, 253
SfaNI GCATC 2 cut(s) 153, 202
SmiMI CAYNNNNRTG 1 cut(s) 210
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 2 cut(s) 226, 256
TaaI ACNGT 1 cut(s) 279
TaqII GACCGA 1 cut(s) 75
TfiI GAWTC 2 cut(s) 52, 146
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseFI GTSAC 1 cut(s) 235
TseI GCWGC 3 cut(s) 166, 251, 262
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 48
XceI RCATGY 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.