Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

3913915 .. 3916338

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03533.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGTCTAACCTAAAAGAATCAGATGTGGAGCATGAAGCTGTTCTGAAGAATGCTATGGTGGATGTCGAAGAAGCAAGCCAACACCGACTAAGCCCCAAACCAGATGTGGAGCATGAAGTTGTTCCGGAGAAGGAAGTCAACACCGTGCAAACTCATCAGTGTTCTGCTGCGGTAGAAGGGTTTTGCACTCATATAGCCGATGTTACTAAAAGACCTTGCGGCACTTGGGCACACTTGTACAGCGTTGGACCAAACAACCGGAATGGGTCCTGGGATGTGACAAATGGTATCAGAGCCACTCTGCCGTGTGGCGCGAGTGTGCCGACGAGGGCGTCGGACTCCCAAGGGGGTTGGATTGTAATATCCCACATCGGTCAAACGGAGAGGGGTTATGTGCTCGGCTTCGGAGGGGATGGGTACTTCGAGGTTAAGCATGTTGATGCTAGAGCAATCCGAGGATGGGTGACCTACTGGGAAGCTGCTCCTGAGCTGCCGGAAACAAAACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

18.51

Weight (kDa)

5.43

Isoelectric Point (pI)

25.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	331
AccII	CGCG	1 cut(s)	314
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	2 cut(s)	170, 219
AcuI	CTGAAG	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	2 cut(s)	239, 419
AfiI	CCNNNNNNNGG	1 cut(s)	460
AjnI	CCWGG	1 cut(s)	269
AluBI	AGCT	3 cut(s)	38, 479, 490
AluI	AGCT	3 cut(s)	38, 479, 490
Alw21I	GWGCWC	1 cut(s)	399
Aor13HI	TCCGGA	1 cut(s)	124
ApeKI	GCWGC	3 cut(s)	167, 479, 490
Asp700I	GAANNNNTTC	2 cut(s)	39, 120
AspLEI	GCGC	1 cut(s)	314
AspS9I	GGNCC	2 cut(s)	248, 267
AsuHPI	GGTGA	1 cut(s)	475
AvaII	GGWCC	2 cut(s)	248, 267
BaeGI	GKGCMC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	399
BbvI	GCAGC	3 cut(s)	154, 466, 477
BccI	CCATC	2 cut(s)	407, 453
BceAI	ACGGC	1 cut(s)	289
BciT130I	CCWGG	1 cut(s)	271
BfaI	CTAG	1 cut(s)	444
BisI	GCNGC	4 cut(s)	168, 220, 480, 491
BlsI	GCNGC	4 cut(s)	169, 221, 481, 492
Bme1390I	CCNGG	1 cut(s)	271
Bme18I	GGWCC	2 cut(s)	248, 267
BmgT120I	GGNCC	2 cut(s)	248, 267
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	1 cut(s)	271
BmrI	ACTGGG	1 cut(s)	481
BmsI	GCATC	1 cut(s)	430
BmuI	ACTGGG	1 cut(s)	481
Bpu10I	CCTNAGC	1 cut(s)	486
BsaHI	GRCGYC	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	270, 343, 454
BsaWI	WCCGGW	2 cut(s)	124, 258
Bsc4I	CCNNNNNNNGG	1 cut(s)	460
Bse1I	ACTGG	1 cut(s)	476
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	3 cut(s)	270, 343, 454
BseGI	GGATG	4 cut(s)	67, 280, 418, 464
BseLI	CCNNNNNNNGG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	1 cut(s)	476
BseSI	GKGCMC	1 cut(s)	232
BseXI	GCAGC	3 cut(s)	154, 466, 477
Bsh1236I	CGCG	1 cut(s)	314
BsiHKAI	GWGCWC	1 cut(s)	399
BsiSI	CCGG	3 cut(s)	125, 259, 494
BslI	CCNNNNNNNGG	1 cut(s)	460
BsmI	GAATGC	1 cut(s)	55
Bsp1286I	GDGCHC	2 cut(s)	232, 399
Bsp13I	TCCGGA	1 cut(s)	124
Bsp1407I	TGTACA	1 cut(s)	237
BspACI	CCGC	2 cut(s)	170, 219
BspCNI	CTCAG	1 cut(s)	478
BspEI	TCCGGA	1 cut(s)	124
BspFNI	CGCG	1 cut(s)	314
BspLI	GGNNCC	1 cut(s)	268
BsrGI	TGTACA	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	476
BssECI	CCNNGG	3 cut(s)	270, 343, 454
BssNI	GRCGYC	1 cut(s)	332
BssT1I	CCWWGG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	2 cut(s)	145, 507
BstACI	GRCGYC	1 cut(s)	332
BstAUI	TGTACA	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	89, 486
BstEII	GGTNACC	1 cut(s)	463
BstF5I	GGATG	4 cut(s)	67, 280, 418, 464
BstFNI	CGCG	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	314
BstNI	CCWGG	1 cut(s)	271
BstNSI	RCATGY	1 cut(s)	437
BstPI	GGTNACC	1 cut(s)	463
BstSCI	CCNGG	1 cut(s)	269
BstSLI	GKGCMC	1 cut(s)	232
BstUI	CGCG	1 cut(s)	314
BstV1I	GCAGC	3 cut(s)	154, 466, 477
BtsCI	GGATG	4 cut(s)	67, 280, 418, 464
BtsIMutI	CAGTG	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	76
CfoI	GCGC	1 cut(s)	314
Cfr13I	GGNCC	2 cut(s)	248, 267
CseI	GACGC	1 cut(s)	321
Csp6I	GTAC	2 cut(s)	238, 418
CviAII	CATG	3 cut(s)	32, 113, 434
CviJI	RGCY	8 cut(s)	38, 78, 93, 197, 296, 402, 479, 490
CviKI_1	RGCY	8 cut(s)	38, 78, 93, 197, 296, 402, 479, 490
CviQI	GTAC	2 cut(s)	238, 418
DdeI	CTNAG	2 cut(s)	89, 486
DrdI	GACNNNNNNGTC	1 cut(s)	331
DseDI	GACNNNNNNGTC	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	343
Eco47I	GGWCC	2 cut(s)	248, 267
Eco57I	CTGAAG	1 cut(s)	65
Eco91I	GGTNACC	1 cut(s)	463
EcoO109I	RGGNCCY	1 cut(s)	267
EcoO65I	GGTNACC	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	269
EcoT14I	CCWWGG	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	343
FaeI	CATG	3 cut(s)	35, 116, 437
FaiI	YATR	7 cut(s)	33, 56, 114, 192, 194, 393, 435
FatI	CATG	3 cut(s)	31, 112, 433
Fnu4HI	GCNGC	4 cut(s)	168, 220, 480, 491
FokI	GGATG	4 cut(s)	74, 287, 425, 471
Fsp4HI	GCNGC	4 cut(s)	168, 220, 480, 491
FspBI	CTAG	1 cut(s)	444
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	4 cut(s)	168, 220, 480, 491
HapII	CCGG	3 cut(s)	125, 259, 494
HgaI	GACGC	1 cut(s)	321
HhaI	GCGC	1 cut(s)	314
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	3 cut(s)	35, 116, 437
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	2 cut(s)	17, 338
HpaII	CCGG	3 cut(s)	125, 259, 494
HphI	GGTGA	1 cut(s)	475
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	6 cut(s)	22, 45, 293, 337, 407, 455
Hpy188III	TCNNGA	2 cut(s)	125, 485
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	2 cut(s)	328, 337
HpyAV	CCTTC	2 cut(s)	124, 170
HpyCH4III	ACNGT	2 cut(s)	145, 507
HpyCH4V	TGCA	2 cut(s)	148, 186
HpyF3I	CTNAG	2 cut(s)	89, 486
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	3 cut(s)	35, 116, 437
HspAI	GCGC	1 cut(s)	312
Kpn2I	TCCGGA	1 cut(s)	124
LmnI	GCTCC	3 cut(s)	28, 109, 487
LpnPI	CCDG	7 cut(s)	114, 138, 256, 272, 283, 457, 498
Lsp1109I	GCAGC	3 cut(s)	154, 466, 477
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	1 cut(s)	444
MaeIII	GTNAC	3 cut(s)	202, 277, 463
MboII	GAAGA	2 cut(s)	58, 80
MhlI	GDGCHC	2 cut(s)	232, 399
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	3 cut(s)	226, 315, 332
MnlI	CCTC	5 cut(s)	321, 378, 401, 418, 449
MroI	TCCGGA	1 cut(s)	124
MroXI	GAANNNNTTC	2 cut(s)	39, 120
MseI	TTAA	1 cut(s)	429
MslI	CAYNNNNRTG	1 cut(s)	438
MspI	CCGG	3 cut(s)	125, 259, 494
MspR9I	CCNGG	1 cut(s)	271
Mva1269I	GAATGC	1 cut(s)	55
MvaI	CCWGG	1 cut(s)	271
MvnI	CGCG	1 cut(s)	314
NlaIII	CATG	3 cut(s)	35, 116, 437
NlaIV	GGNNCC	1 cut(s)	268
NmeAIII	GCCGAG	1 cut(s)	378
NmuCI	GTSAC	2 cut(s)	277, 463
NspI	RCATGY	1 cut(s)	437
PctI	GAATGC	1 cut(s)	55
PdmI	GAANNNNTTC	2 cut(s)	39, 120
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	4 cut(s)	169, 221, 481, 492
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
PpuMI	RGGWCCY	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	269
PspEI	GGTNACC	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	2 cut(s)	248, 267
PspPPI	RGGWCCY	1 cut(s)	267
RsaI	GTAC	2 cut(s)	239, 419
RsaNI	GTAC	2 cut(s)	238, 418
RseI	CAYNNNNRTG	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	4 cut(s)	168, 220, 480, 491
Sau96I	GGNCC	2 cut(s)	248, 267
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	271
SduI	GDGCHC	2 cut(s)	232, 399
SetI	ASST	7 cut(s)	12, 40, 217, 429, 470, 481, 492
SfaNI	GCATC	1 cut(s)	430
SinI	GGWCC	2 cut(s)	248, 267
SmiMI	CAYNNNNRTG	1 cut(s)	438
SsiI	CCGC	2 cut(s)	170, 219
SspMI	CTAG	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	269
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	2 cut(s)	145, 507
TaqI	TCGA	2 cut(s)	66, 423
TaqII	GACCGA	1 cut(s)	362
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	1 cut(s)	164
TseFI	GTSAC	2 cut(s)	277, 463
TseI	GCWGC	3 cut(s)	167, 479, 490
Tsp45I	GTSAC	2 cut(s)	277, 463
TspDTI	ATGAA	2 cut(s)	48, 129
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	1 cut(s)	164
VpaK11BI	GGWCC	2 cut(s)	248, 267
XceI	RCATGY	1 cut(s)	437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XmnI	GAANNNNTTC	2 cut(s)	39, 120
XspI	CTAG	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.