Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

13014064 .. 13014831

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10123.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGTGGACATCGTTCCGCAGATGGACCGAGCACATATGAGACAGAGGAATAATCAAGTGAGGGATGATTTCAACACCATGAACTCCTTTCCTGTCATCGAGACTCACTTGGAGGATCTGGAGGGACATGCAGCTTCCACTTACACATACGATGTGTACAAGTGGGTTAAGAAAGAGATAATGAAGGAGAAATTCTTGGTCACAAAAGGTTTCCAAGCTGCCGCTGAGGATGACCATTCAGTGCACAAAATAGCAAATTTCAAGCGGCAACAATATGTGCACGAGGTTGTGTACTACCACGGGAGATTAACTACAGATGAAGAAGCCCTGGAGGAGGCGGTTCTCCCCCCAATCATGGTGTGTACTTGTAATATGTTTCAGTATAAGGGAGTCCCATGCCGACACATGTTCATGTTGATGAAACAAGAAAACATGTCAAAAATTCCCAGGTCACTCATAATGAAAAGATGGACGCGGAACGCTGGGAGTGTGTGTGATATTGAATATCCAGATGGACAAAATATGGATAAAGAAGCATTGGAGGTCAGTAGGTTCGGTGCATTGACTGGTGATTGTAATCAGATGTGTTCTTATGCTTCAAAGACCACAAAAGGATATAGTATGTTGAAGAAGGAGATAGCCAGGCTGACCGCATTGATAGAAGGTCTCGTCAAAGATAGTGAGCAAGTGCACGTGTGTGACCCCCAGCCTGAGAGGACTGGCTGTGTTATACGAGATCCGGTCGTCGTTAAGAAGAAAGGCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

256

Amino Acids

29.4

Weight (kDa)

7.1

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	475
AciI	CCGC	6 cut(s)	17, 222, 265, 338, 475, 651
AclWI	GGATC	2 cut(s)	123, 731
AcsI	RAATTY	3 cut(s)	191, 256, 441
AcvI	CACGTG	1 cut(s)	694
AfaI	GTAC	3 cut(s)	158, 293, 364
AfiI	CCNNNNNNNGG	2 cut(s)	334, 355
AflIII	ACRYGT	3 cut(s)	405, 432, 693
AgsI	TTSAA	5 cut(s)	73, 262, 503, 600, 628
AjnI	CCWGG	3 cut(s)	327, 446, 641
AleI	CACNNNNGTG	1 cut(s)	696
AluBI	AGCT	2 cut(s)	134, 218
AluI	AGCT	2 cut(s)	134, 218
Alw21I	GWGCWC	4 cut(s)	34, 246, 282, 693
Alw26I	GTCTC	3 cut(s)	34, 95, 671
Alw44I	GTGCAC	3 cut(s)	242, 278, 689
AlwI	GGATC	2 cut(s)	123, 731
ApaLI	GTGCAC	3 cut(s)	242, 278, 689
ApeKI	GCWGC	2 cut(s)	131, 218
ApoI	RAATTY	3 cut(s)	191, 256, 441
AspS9I	GGNCC	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	581
AvaII	GGWCC	1 cut(s)	25
BaeGI	GKGCMC	3 cut(s)	246, 282, 693
BauI	CACGAG	1 cut(s)	281
BbrPI	CACGTG	1 cut(s)	694
Bbv12I	GWGCWC	4 cut(s)	34, 246, 282, 693
BbvCI	CCTCAGC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	143, 205
BccI	CCATC	3 cut(s)	16, 462, 506
BciT130I	CCWGG	3 cut(s)	329, 448, 643
BcoDI	GTCTC	3 cut(s)	34, 95, 671
BfaI	CTAG	1 cut(s)	766
BfmI	CTRYAG	1 cut(s)	312
BisI	GCNGC	4 cut(s)	132, 219, 222, 266
BlsI	GCNGC	4 cut(s)	133, 220, 223, 267
Bme1390I	CCNGG	3 cut(s)	329, 448, 643
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	25
BmrFI	CCNGG	3 cut(s)	329, 448, 643
BpmI	CTGGAG	2 cut(s)	140, 350
Bpu10I	CCTNAGC	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	694
BsaBI	GATNNNNATC	1 cut(s)	576
BsaI	GGTCTC	1 cut(s)	671
BsaJI	CCNNGG	3 cut(s)	298, 327, 446
BsaWI	WCCGGW	1 cut(s)	739
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 355
Bse1I	ACTGG	2 cut(s)	571, 724
Bse8I	GATNNNNATC	1 cut(s)	576
BseBI	CCWGG	3 cut(s)	329, 448, 643
BseDI	CCNNGG	3 cut(s)	298, 327, 446
BseGI	GGATG	2 cut(s)	70, 235
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	2 cut(s)	334, 355
BseMII	CTCAG	2 cut(s)	216, 702
BseNI	ACTGG	2 cut(s)	571, 724
BseRI	GAGGAG	1 cut(s)	347
BseSI	GKGCMC	3 cut(s)	246, 282, 693
BseXI	GCAGC	2 cut(s)	143, 205
BseYI	CCCAGC	2 cut(s)	482, 705
Bsh1236I	CGCG	1 cut(s)	475
Bsh1285I	CGRYCG	1 cut(s)	744
BsiEI	CGRYCG	1 cut(s)	744
BsiHKAI	GWGCWC	4 cut(s)	34, 246, 282, 693
BsiSI	CCGG	1 cut(s)	740
BslFI	GGGAC	2 cut(s)	138, 377
BslI	CCNNNNNNNGG	2 cut(s)	334, 355
BsmAI	GTCTC	3 cut(s)	34, 95, 671
BsmFI	GGGAC	2 cut(s)	138, 377
Bso31I	GGTCTC	1 cut(s)	671
Bsp1286I	GDGCHC	4 cut(s)	34, 246, 282, 693
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	115, 736
BspACI	CCGC	6 cut(s)	17, 222, 265, 338, 475, 651
BspCNI	CTCAG	2 cut(s)	217, 703
BspFNI	CGCG	1 cut(s)	475
BspPI	GGATC	2 cut(s)	123, 731
BspTNI	GGTCTC	1 cut(s)	671
BsrGI	TGTACA	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	571, 724
BssECI	CCNNGG	3 cut(s)	298, 327, 446
BssMI	GATC	2 cut(s)	115, 736
BssSI	CACGAG	1 cut(s)	281
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	3 cut(s)	329, 448, 643
BstAUI	TGTACA	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	694
BstDEI	CTNAG	2 cut(s)	225, 711
BstDSI	CCRYGG	1 cut(s)	298
BstENI	CCTNNNNNAGG	1 cut(s)	332
BstF5I	GGATG	2 cut(s)	70, 235
BstFNI	CGCG	1 cut(s)	475
BstKTI	GATC	2 cut(s)	118, 739
BstMAI	GTCTC	3 cut(s)	34, 95, 671
BstMBI	GATC	2 cut(s)	115, 736
BstMCI	CGRYCG	1 cut(s)	744
BstNI	CCWGG	3 cut(s)	329, 448, 643
BstNSI	RCATGY	3 cut(s)	131, 409, 436
BstSCI	CCNGG	3 cut(s)	327, 446, 641
BstSFI	CTRYAG	1 cut(s)	312
BstSLI	GKGCMC	3 cut(s)	246, 282, 693
BstUI	CGCG	1 cut(s)	475
BstV1I	GCAGC	2 cut(s)	143, 205
BstX2I	RGATCY	2 cut(s)	115, 736
BstYI	RGATCY	2 cut(s)	115, 736
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	2 cut(s)	70, 235
BtsIMutI	CAGTG	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	25
CseI	GACGC	1 cut(s)	481
Csp6I	GTAC	3 cut(s)	157, 292, 363
CviAII	CATG	7 cut(s)	79, 128, 355, 396, 406, 412, 433
CviJI	RGCY	7 cut(s)	134, 218, 326, 641, 646, 709, 723
CviKI_1	RGCY	7 cut(s)	134, 218, 326, 641, 646, 709, 723
CviQI	GTAC	3 cut(s)	157, 292, 363
DdeI	CTNAG	2 cut(s)	225, 711
DpnI	GATC	2 cut(s)	117, 738
DpnII	GATC	2 cut(s)	115, 736
Eco31I	GGTCTC	1 cut(s)	671
Eco47I	GGWCC	1 cut(s)	25
Eco72I	CACGTG	1 cut(s)	694
EcoNI	CCTNNNNNAGG	1 cut(s)	332
EcoRII	CCWGG	3 cut(s)	327, 446, 641
FaeI	CATG	7 cut(s)	82, 131, 358, 399, 409, 415, 436
FaqI	GGGAC	2 cut(s)	138, 377
FatI	CATG	7 cut(s)	78, 127, 354, 395, 405, 411, 432
FauNDI	CATATG	1 cut(s)	36
Fnu4HI	GCNGC	4 cut(s)	132, 219, 222, 266
FokI	GGATG	2 cut(s)	77, 242
Fsp4HI	GCNGC	4 cut(s)	132, 219, 222, 266
FspBI	CTAG	1 cut(s)	766
GluI	GCNGC	4 cut(s)	132, 219, 222, 266
GsaI	CCCAGC	2 cut(s)	486, 709
GsuI	CTGGAG	2 cut(s)	140, 350
HapII	CCGG	1 cut(s)	740
HgaI	GACGC	1 cut(s)	481
Hin1II	CATG	7 cut(s)	82, 131, 358, 399, 409, 415, 436
HinfI	GANTC	2 cut(s)	103, 390
HpaII	CCGG	1 cut(s)	740
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	7 cut(s)	7, 157, 244, 280, 292, 363, 691
Hpy188I	TCNGA	1 cut(s)	582
Hpy188III	TCNNGA	3 cut(s)	100, 119, 509
Hpy8I	GTNNAC	7 cut(s)	7, 157, 244, 280, 292, 363, 691
Hpy99I	CGWCG	1 cut(s)	749
HpyAV	CCTTC	3 cut(s)	178, 625, 656
HpyCH4IV	ACGT	1 cut(s)	693
HpyCH4V	TGCA	5 cut(s)	131, 244, 280, 560, 691
HpyF3I	CTNAG	2 cut(s)	225, 711
HpySE526I	ACGT	1 cut(s)	693
Hsp92II	CATG	7 cut(s)	82, 131, 358, 399, 409, 415, 436
Kzo9I	GATC	2 cut(s)	115, 736
Lsp1109I	GCAGC	2 cut(s)	143, 205
MaeI	CTAG	1 cut(s)	766
MaeII	ACGT	1 cut(s)	693
MaeIII	GTNAC	3 cut(s)	199, 450, 698
MalI	GATC	2 cut(s)	117, 738
MboI	GATC	2 cut(s)	115, 736
MboII	GAAGA	3 cut(s)	332, 640, 766
MflI	RGATCY	2 cut(s)	115, 736
MhlI	GDGCHC	4 cut(s)	34, 246, 282, 693
MluCI	AATT	3 cut(s)	191, 256, 441
MlyI	GAGTC	2 cut(s)	97, 399
MseI	TTAA	3 cut(s)	168, 308, 750
MslI	CAYNNNNRTG	3 cut(s)	410, 416, 696
MspA1I	CMGCKG	1 cut(s)	224
MspI	CCGG	1 cut(s)	740
MspR9I	CCNGG	3 cut(s)	329, 448, 643
MvaI	CCWGG	3 cut(s)	329, 448, 643
MvnI	CGCG	1 cut(s)	475
NdeI	CATATG	1 cut(s)	36
NdeII	GATC	2 cut(s)	115, 736
NlaIII	CATG	7 cut(s)	82, 131, 358, 399, 409, 415, 436
NmuCI	GTSAC	3 cut(s)	199, 450, 698
NspI	RCATGY	3 cut(s)	131, 409, 436
OliI	CACNNNNGTG	1 cut(s)	696
PciI	ACATGT	2 cut(s)	405, 432
PkrI	GCNGC	4 cut(s)	133, 220, 223, 267
PleI	GAGTC	2 cut(s)	97, 398
PmaCI	CACGTG	1 cut(s)	694
PmlI	CACGTG	1 cut(s)	694
PpsI	GAGTC	2 cut(s)	97, 398
Ppu21I	YACGTR	1 cut(s)	694
PscI	ACATGT	2 cut(s)	405, 432
Psp6I	CCWGG	3 cut(s)	327, 446, 641
PspCI	CACGTG	1 cut(s)	694
PspFI	CCCAGC	2 cut(s)	482, 705
PspGI	CCWGG	3 cut(s)	327, 446, 641
PspPI	GGNCC	1 cut(s)	25
PsuI	RGATCY	2 cut(s)	115, 736
RsaI	GTAC	3 cut(s)	158, 293, 364
RsaNI	GTAC	3 cut(s)	157, 292, 363
RseI	CAYNNNNRTG	3 cut(s)	410, 416, 696
SaqAI	TTAA	3 cut(s)	168, 308, 750
SatI	GCNGC	4 cut(s)	132, 219, 222, 266
Sau3AI	GATC	2 cut(s)	115, 736
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	2 cut(s)	97, 399
ScrFI	CCNGG	3 cut(s)	329, 448, 643
SduI	GDGCHC	4 cut(s)	34, 246, 282, 693
SetI	ASST	9 cut(s)	136, 211, 220, 288, 452, 546, 554, 667, 696
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	1 cut(s)	25
SmiMI	CAYNNNNRTG	3 cut(s)	410, 416, 696
Sse9I	AATT	3 cut(s)	191, 256, 441
SsiI	CCGC	6 cut(s)	17, 222, 265, 338, 475, 651
SspMI	CTAG	1 cut(s)	766
StyD4I	CCNGG	3 cut(s)	327, 446, 641
TaiI	ACGT	1 cut(s)	696
TaqI	TCGA	1 cut(s)	99
TaqII	GACCGA	1 cut(s)	42
TasI	AATT	3 cut(s)	191, 256, 441
TatI	WGTACW	3 cut(s)	156, 291, 362
TauI	GCSGC	2 cut(s)	224, 268
Tru1I	TTAA	3 cut(s)	168, 308, 750
Tru9I	TTAA	3 cut(s)	168, 308, 750
TscAI	CASTG	1 cut(s)	246
TseFI	GTSAC	3 cut(s)	199, 450, 698
TseI	GCWGC	2 cut(s)	131, 218
Tsp45I	GTSAC	3 cut(s)	199, 450, 698
TspDTI	ATGAA	6 cut(s)	95, 197, 333, 400, 434, 476
TspRI	CASTG	1 cut(s)	246
VneI	GTGCAC	3 cut(s)	242, 278, 689
VpaK11BI	GGWCC	1 cut(s)	25
XagI	CCTNNNNNAGG	1 cut(s)	332
XapI	RAATTY	3 cut(s)	191, 256, 441
XceI	RCATGY	3 cut(s)	131, 409, 436
XspI	CTAG	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.