Rroxscaffold_3G00229910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000607
Physical Location & Seq
Forward (+)
14473367 .. 14474174
808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00229910.1

Sequence Viewer

Length: 417 bp
ATGGCAAAGGTTTCAGCTAACACTAACTCTCTCGATCGGTGGCTCGATGGGAATGCCCGGAACCATCAAAAACTGTTGTTTAGGAAGTACGGAGGAAGGCTAGAAAGCAAGCCTAGTCTCGATATTGCGGGTAGCCTTATGGTCCCCGCATTGGATGAAAAGCATAAGCATATCTCTGATGAATATGAGAAGGAAGACGACTCAAAGCCAATACATGAGCACACAAGTTCTGCTGTTGAAGAAGAATTTTGCATCCATATCACCGATGTCACTAAAAGACCATGCGGCACATGCGCACACCTGTACAACGTAGGTCCGGACAACAAAAAGAGATGCAGTTGTATCTTATGCCACCGGGAAGAGGAACAATATGGGAATGCCAATTCACCTCCCTCGGAGTTATTGGTAGTGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.52

Weight (kDa)

6.05

Isoelectric Point (pI)

56.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 295
AccIII TCCGGA 1 cut(s) 316
AciI CCGC 3 cut(s) 128, 147, 285
AcsI RAATTY 1 cut(s) 245
AfaI GTAC 2 cut(s) 89, 305
AfiI CCNNNNNNNGG 2 cut(s) 151, 361
AgsI TTSAA 1 cut(s) 239
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 122
Aor13HI TCCGGA 1 cut(s) 316
AoxI GGCC 1 cut(s) 411
ApoI RAATTY 1 cut(s) 245
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 2 cut(s) 142, 314
AsuC2I CCSGG 2 cut(s) 58, 356
AsuHPI GGTGA 2 cut(s) 253, 378
AvaII GGWCC 2 cut(s) 142, 314
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 222
BccI CCATC 2 cut(s) 41, 72
BcgI CGANNNNNNTGC 2 cut(s) 35, 69
BcnI CCSGG 2 cut(s) 58, 356
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 3 cut(s) 101, 114, 415
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
Bme1390I CCNGG 2 cut(s) 58, 356
Bme18I GGWCC 2 cut(s) 142, 314
BmgT120I GGNCC 2 cut(s) 142, 314
BmiI GGNNCC 2 cut(s) 62, 144
BmrFI CCNGG 2 cut(s) 58, 356
BmsI GCATC 2 cut(s) 261, 323
BpiI GAAGAC 1 cut(s) 201
BpuMI CCSGG 2 cut(s) 58, 356
BsaJI CCNNGG 1 cut(s) 393
BsaWI WCCGGW 1 cut(s) 316
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 361
BseAI TCCGGA 1 cut(s) 316
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 2 cut(s) 160, 252
BseLI CCNNNNNNNGG 2 cut(s) 151, 361
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 1 cut(s) 413
BsiEI CGRYCG 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 222
BsiSI CCGG 3 cut(s) 58, 317, 355
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 2 cut(s) 151, 361
BsmAI GTCTC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 128
BsmI GAATGC 2 cut(s) 58, 382
BsnI GGCC 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 222
Bsp13I TCCGGA 1 cut(s) 316
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 3 cut(s) 128, 147, 285
BspANI GGCC 1 cut(s) 413
BspEI TCCGGA 1 cut(s) 316
BspLI GGNNCC 2 cut(s) 62, 144
BsrGI TGTACA 1 cut(s) 303
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 354
BstAUI TGTACA 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 110
BstF5I GGATG 2 cut(s) 160, 252
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 1 cut(s) 34
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 56, 354
BstV2I GAAGAC 1 cut(s) 201
BsuRI GGCC 1 cut(s) 413
BtsCI GGATG 2 cut(s) 160, 252
Cac8I GCNNGC 1 cut(s) 110
CfoI GCGC 1 cut(s) 296
Cfr13I GGNCC 2 cut(s) 142, 314
Csp6I GTAC 2 cut(s) 88, 304
CviAII CATG 3 cut(s) 215, 282, 291
CviJI RGCY 7 cut(s) 17, 43, 100, 112, 135, 208, 413
CviKI_1 RGCY 7 cut(s) 17, 43, 100, 112, 135, 208, 413
CviQI GTAC 2 cut(s) 88, 304
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco47I GGWCC 2 cut(s) 142, 314
FaeI CATG 3 cut(s) 218, 285, 294
FaqI GGGAC 1 cut(s) 128
FatI CATG 3 cut(s) 214, 281, 290
FauI CCCGC 2 cut(s) 121, 154
Fnu4HI GCNGC 1 cut(s) 286
FokI GGATG 2 cut(s) 167, 239
Fsp4HI GCNGC 1 cut(s) 286
FspAI RTGCGCAY 1 cut(s) 295
FspBI CTAG 3 cut(s) 101, 114, 415
FspI TGCGCA 1 cut(s) 295
GlaI GCGC 1 cut(s) 295
GluI GCNGC 1 cut(s) 286
HaeIII GGCC 1 cut(s) 413
HapII CCGG 3 cut(s) 58, 317, 355
HhaI GCGC 1 cut(s) 296
Hin1II CATG 3 cut(s) 218, 285, 294
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HinfI GANTC 1 cut(s) 200
HpaII CCGG 3 cut(s) 58, 317, 355
HphI GGTGA 2 cut(s) 253, 378
Hpy188I TCNGA 2 cut(s) 178, 397
Hpy188III TCNNGA 3 cut(s) 32, 119, 317
HpyAV CCTTC 2 cut(s) 90, 184
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 2 cut(s) 252, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 3 cut(s) 218, 285, 294
HspAI GCGC 1 cut(s) 294
Kpn2I TCCGGA 1 cut(s) 316
Kzo9I GATC 1 cut(s) 34
LpnPI CCDG 4 cut(s) 71, 314, 330, 368
LweI GCATC 2 cut(s) 261, 323
MaeI CTAG 3 cut(s) 101, 114, 415
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 268
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 4 cut(s) 206, 251, 254, 371
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 2 cut(s) 245, 382
MlyI GAGTC 1 cut(s) 194
MnlI CCTC 4 cut(s) 86, 355, 399, 403
MroI TCCGGA 1 cut(s) 316
MspI CCGG 3 cut(s) 58, 317, 355
MspR9I CCNGG 2 cut(s) 58, 356
Mva1269I GAATGC 2 cut(s) 58, 382
MwoI GCNNNNNNNGC 1 cut(s) 291
NciI CCSGG 2 cut(s) 58, 356
NdeII GATC 1 cut(s) 34
NlaIII CATG 3 cut(s) 218, 285, 294
NlaIV GGNNCC 2 cut(s) 62, 144
NmuCI GTSAC 1 cut(s) 268
NsbI TGCGCA 1 cut(s) 295
NspI RCATGY 1 cut(s) 294
PctI GAATGC 2 cut(s) 58, 382
PkrI GCNGC 1 cut(s) 287
Ple19I CGATCG 1 cut(s) 37
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PspN4I GGNNCC 2 cut(s) 62, 144
PspPI GGNCC 2 cut(s) 142, 314
PvuI CGATCG 1 cut(s) 37
RsaI GTAC 2 cut(s) 89, 305
RsaNI GTAC 2 cut(s) 88, 304
SatI GCNGC 1 cut(s) 286
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 2 cut(s) 142, 314
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 58, 356
SduI GDGCHC 1 cut(s) 222
SetI ASST 6 cut(s) 12, 19, 303, 312, 316, 391
SfaNI GCATC 2 cut(s) 261, 323
SinI GGWCC 2 cut(s) 142, 314
Sse9I AATT 2 cut(s) 245, 382
SsiI CCGC 3 cut(s) 128, 147, 285
SspMI CTAG 3 cut(s) 101, 114, 415
StyD4I CCNGG 2 cut(s) 56, 354
TaaI ACNGT 1 cut(s) 75
TaiI ACGT 1 cut(s) 312
TaqI TCGA 3 cut(s) 33, 45, 120
TasI AATT 2 cut(s) 245, 382
TatI WGTACW 1 cut(s) 303
TauI GCSGC 1 cut(s) 288
TseFI GTSAC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 171, 195
TspGWI ACGGA 1 cut(s) 105
VpaK11BI GGWCC 2 cut(s) 142, 314
XapI RAATTY 1 cut(s) 245
XceI RCATGY 1 cut(s) 294
XspI CTAG 3 cut(s) 101, 114, 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.