FvH4_4g08976

MULE transposase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000607
Physical Location & Seq
Reverse (-)
10073524 .. 10076622
3099 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08976.t1

Sequence Viewer

Length: 1269 bp
ATGGATGCGTCTGAGAATGAAAAACAACCGAATAAGGGTGTAGAGGATGTGGCAGTAGATGTTTCCCGATTTGGATGCCTGATGATCGCCGATGTGCGAGCTTTGACCTTCGAAACAGTGGATGAGGCAGAGAGATTCTACTGTGCATATTCAGCAGCAGTTGGATTTGGATGTAGGAAGGATGACAAGGGAGAGTCTAACGGTTTGATTCAGTGGAGCGACGCAGCTTTGGCTTTGACAAACACAATGACAATGGTGGAGCAGGCTGGGGGATATTCGGTAGTGGGATTCACCATGAAGGACCTCTACAACAAGCTTGACCAACAACGACGGACCTCCCCATTTGAGAGTGATTTTGAAGGAGCGCTTTCCTACATGAGAGCACTGGCAGCAAAAGACCCACACTTCATATGCAGATTCACTACAGATTTGGAAGACAGATTACTTATGAAACTGAGACACAATCAAGAAAGGGATGAATTCATCAATATGGATTCCTTTCCTGGTGCCGTAACTCACTTGGTAGATTTGGAGATACAAGCCTCTTCTATATTCAAACACGATGTGTTTAAGTGGATTGTAAGAGAGATCAAGAAAGAGAGCTTTATTACACTAAAGCAAGGAGCAGAATGTCATGAAGATGGTAGTTGTGTTTACAAGGTATCAGTTTACAAACAGCCTGAATTTGACCACACTGTTGTTTACCACCCTGAGAAAGAGATTGACAGTGCAGAAGACCCGATTATGGTGTGTTCTTACAGAATGTTTCAGTACAGGGGAGTACCATGTCGTCACATGTTCACGGTGATGAAAAATGAACACATTTTTGAGCTTCACAAGTCACTGATCGTCAAGAGATGGACAAAGGACGCAAAAACTGTGTGTGAGATCCCTTATCCGGATCAATCTATGCCTAGAGAAGCATTGGAAGTGAGCAGGAAGGAGAAAGAAAAAGCTGAGAAGAGCAATGAAAATGACGAACGAAACACTGACCCTCGTCCTTCAGTTGCAACACCTGCAAAGAGATCCTGTGGTTATTGCAAACGATCTGGACACAATACTCAAACATGTGATGTTAGGAAAGAGAAAGAAAAAGCTGAGAAGACAAACGAAAATGTTACGGGAACAAGCAATGATCCTCCTCCTTCGGTTGTGACACCTGCAAAGAAAACTATTCACTGTAGTGCGTGCAAAGGAGCCGGGCACACACACTGTAGATGCCCGAAGAAAACAAAAAAAGGAGACGCCTCCCCCACATCTGAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

423

Amino Acids

47.86

Weight (kDa)

6.3

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1024, 1168
Acc36I ACCTGC 2 cut(s) 1024, 1168
AccB1I GGYRCC 1 cut(s) 506
AccIII TCCGGA 1 cut(s) 898
AclWI GGATC 4 cut(s) 883, 909, 1020, 1130
AcsI RAATTY 2 cut(s) 479, 683
AcuI CTGAAG 1 cut(s) 987
AcyI GRCGYC 1 cut(s) 1245
AdeI CACNNNGTG 1 cut(s) 565
AfaI GTAC 2 cut(s) 773, 783
AfeI AGCGCT 1 cut(s) 366
AfiI CCNNNNNNNGG 3 cut(s) 35, 745, 898
AflIII ACRYGT 2 cut(s) 795, 1067
AgsI TTSAA 2 cut(s) 359, 556
AjnI CCWGG 1 cut(s) 502
AleI CACNNNNGTG 1 cut(s) 1182
AluBI AGCT 7 cut(s) 101, 227, 316, 603, 832, 956, 1097
AluI AGCT 7 cut(s) 101, 227, 316, 603, 832, 956, 1097
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 2 cut(s) 451, 1236
AlwI GGATC 4 cut(s) 883, 909, 1020, 1130
Aor13HI TCCGGA 1 cut(s) 898
Aor51HI AGCGCT 1 cut(s) 366
ApeKI GCWGC 3 cut(s) 155, 224, 389
ApoI RAATTY 2 cut(s) 479, 683
AspLEI GCGC 1 cut(s) 367
AspS9I GGNCC 2 cut(s) 301, 333
AsuC2I CCSGG 1 cut(s) 1201
AsuHPI GGTGA 2 cut(s) 283, 817
AsuII TTCGAA 1 cut(s) 111
AvaII GGWCC 2 cut(s) 301, 333
BaeGI GKGCMC 1 cut(s) 1206
BanI GGYRCC 1 cut(s) 506
BarI GAAGNNNNNNTAC 4 cut(s) 290, 322, 426, 458
BbsI GAAGAC 3 cut(s) 441, 741, 1109
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 3 cut(s) 167, 236, 401
BccI CCATC 2 cut(s) 635, 852
BceAI ACGGC 1 cut(s) 494
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
BciT130I CCWGG 1 cut(s) 504
BcnI CCSGG 1 cut(s) 1201
BcoDI GTCTC 2 cut(s) 451, 1236
BfaI CTAG 1 cut(s) 915
BfmI CTRYAG 3 cut(s) 423, 1180, 1213
BfoI RGCGCY 1 cut(s) 368
BfuAI ACCTGC 2 cut(s) 1024, 1168
BisI GCNGC 3 cut(s) 156, 225, 390
BlsI GCNGC 3 cut(s) 157, 226, 391
Bme1390I CCNGG 2 cut(s) 504, 1201
Bme18I GGWCC 2 cut(s) 301, 333
BmgT120I GGNCC 2 cut(s) 301, 333
BmiI GGNNCC 2 cut(s) 508, 1198
BmrFI CCNGG 2 cut(s) 504, 1201
BmsI GCATC 2 cut(s) 65, 1208
BoxI GACNNNNGTC 1 cut(s) 996
BpiI GAAGAC 3 cut(s) 441, 741, 1109
Bpu14I TTCGAA 1 cut(s) 111
BpuMI CCSGG 1 cut(s) 1201
BsaHI GRCGYC 1 cut(s) 1245
BsaWI WCCGGW 1 cut(s) 898
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 745, 898
Bse1I ACTGG 1 cut(s) 390
Bse3DI GCAATG 2 cut(s) 973, 1138
BseAI TCCGGA 1 cut(s) 898
BseBI CCWGG 1 cut(s) 504
BseGI GGATG 7 cut(s) 10, 52, 80, 127, 176, 187, 481
BseLI CCNNNNNNNGG 3 cut(s) 35, 745, 898
BseMI GCAATG 2 cut(s) 973, 1138
BseMII CTCAG 5 cut(s) 446, 702, 948, 1089, 1251
BseNI ACTGG 1 cut(s) 390
BseRI GAGGAG 1 cut(s) 1131
BseSI GKGCMC 1 cut(s) 1206
BseXI GCAGC 3 cut(s) 167, 236, 401
BseYI CCCAGC 1 cut(s) 266
BsgI GTGCAG 1 cut(s) 750
BshNI GGYRCC 1 cut(s) 506
BsiHKAI GWGCWC 1 cut(s) 385
BsiSI CCGG 2 cut(s) 899, 1200
BslI CCNNNNNNNGG 3 cut(s) 35, 745, 898
BsmAI GTCTC 2 cut(s) 451, 1236
BsmBI CGTCTC 1 cut(s) 1236
Bsp119I TTCGAA 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 385, 1206
Bsp13I TCCGGA 1 cut(s) 898
Bsp143I GATC 8 cut(s) 84, 588, 846, 888, 901, 1025, 1046, 1135
BspCNI CTCAG 6 cut(s) 4, 447, 703, 949, 1090, 1252
BspEI TCCGGA 1 cut(s) 898
BspHI TCATGA 1 cut(s) 634
BspLI GGNNCC 2 cut(s) 508, 1198
BspMI ACCTGC 2 cut(s) 1024, 1168
BspPI GGATC 4 cut(s) 883, 909, 1020, 1130
BspQI GCTCTTC 1 cut(s) 956
BspT104I TTCGAA 1 cut(s) 111
BspT107I GGYRCC 1 cut(s) 506
BsrDI GCAATG 2 cut(s) 973, 1138
BsrI ACTGG 1 cut(s) 390
BssMI GATC 8 cut(s) 84, 588, 846, 888, 901, 1025, 1046, 1135
BssNI GRCGYC 1 cut(s) 1245
Bst2UI CCWGG 1 cut(s) 504
Bst4CI ACNGT 9 cut(s) 118, 143, 203, 697, 728, 805, 880, 1181, 1214
Bst6I CTCTTC 2 cut(s) 550, 956
BstACI GRCGYC 1 cut(s) 1245
BstAPI GCANNNNNTGC 1 cut(s) 1016
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 3 cut(s) 99, 264, 1189
BstDEI CTNAG 6 cut(s) 12, 455, 711, 957, 1098, 1260
BstF5I GGATG 7 cut(s) 10, 52, 80, 127, 176, 187, 481
BstH2I RGCGCY 1 cut(s) 368
BstHHI GCGC 1 cut(s) 367
BstKTI GATC 8 cut(s) 87, 591, 849, 891, 904, 1028, 1049, 1138
BstMAI GTCTC 2 cut(s) 451, 1236
BstMBI GATC 8 cut(s) 84, 588, 846, 888, 901, 1025, 1046, 1135
BstMWI GCNNNNNNNGC 4 cut(s) 152, 230, 389, 1016
BstNI CCWGG 1 cut(s) 504
BstNSI RCATGY 2 cut(s) 799, 1071
BstPAI GACNNNNGTC 1 cut(s) 996
BstSCI CCNGG 2 cut(s) 502, 1199
BstSFI CTRYAG 3 cut(s) 423, 1180, 1213
BstSLI GKGCMC 1 cut(s) 1206
BstV1I GCAGC 3 cut(s) 167, 236, 401
BstV2I GAAGAC 3 cut(s) 441, 741, 1109
BstX2I RGATCY 2 cut(s) 888, 1025
BstYI RGATCY 2 cut(s) 888, 1025
BtsCI GGATG 7 cut(s) 10, 52, 80, 127, 176, 187, 481
BtsIMutI CAGTG 9 cut(s) 123, 218, 383, 693, 733, 842, 987, 1177, 1210
BveI ACCTGC 2 cut(s) 1024, 1168
Cac8I GCNNGC 3 cut(s) 99, 264, 1189
CciI TCATGA 1 cut(s) 634
CfoI GCGC 1 cut(s) 367
Cfr13I GGNCC 2 cut(s) 301, 333
CseI GACGC 3 cut(s) 230, 878, 1253
Csp6I GTAC 2 cut(s) 772, 782
CviAII CATG 6 cut(s) 295, 376, 635, 786, 796, 1068
CviQI GTAC 2 cut(s) 772, 782
DdeI CTNAG 6 cut(s) 12, 455, 711, 957, 1098, 1260
DpnI GATC 8 cut(s) 86, 590, 848, 890, 903, 1027, 1048, 1137
DpnII GATC 8 cut(s) 84, 588, 846, 888, 901, 1025, 1046, 1135
DraIII CACNNNGTG 1 cut(s) 565
Eam1104I CTCTTC 2 cut(s) 550, 956
EarI CTCTTC 2 cut(s) 550, 956
Eco47I GGWCC 2 cut(s) 301, 333
Eco47III AGCGCT 1 cut(s) 366
Eco57I CTGAAG 1 cut(s) 987
EcoO109I RGGNCCY 1 cut(s) 301
EcoRI GAATTC 1 cut(s) 479
EcoRII CCWGG 1 cut(s) 502
Esp3I CGTCTC 1 cut(s) 1236
FaeI CATG 6 cut(s) 298, 379, 638, 789, 799, 1071
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FatI CATG 6 cut(s) 294, 375, 634, 785, 795, 1067
FauNDI CATATG 1 cut(s) 410
Fnu4HI GCNGC 3 cut(s) 156, 225, 390
FokI GGATG 7 cut(s) 17, 59, 87, 134, 183, 194, 488
Fsp4HI GCNGC 3 cut(s) 156, 225, 390
FspBI CTAG 1 cut(s) 915
GlaI GCGC 1 cut(s) 366
GluI GCNGC 3 cut(s) 156, 225, 390
GsaI CCCAGC 1 cut(s) 270
HaeII RGCGCY 1 cut(s) 368
HapII CCGG 2 cut(s) 899, 1200
HgaI GACGC 3 cut(s) 230, 878, 1253
HhaI GCGC 1 cut(s) 367
Hin1I GRCGYC 1 cut(s) 1245
Hin1II CATG 6 cut(s) 298, 379, 638, 789, 799, 1071
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 6 cut(s) 135, 194, 208, 288, 417, 494
HpaII CCGG 2 cut(s) 899, 1200
HphI GGTGA 2 cut(s) 283, 817
Hpy166II GTNNAC 4 cut(s) 655, 670, 703, 801
Hpy188I TCNGA 2 cut(s) 13, 1261
Hpy188III TCNNGA 7 cut(s) 66, 467, 592, 635, 853, 899, 1050
Hpy8I GTNNAC 4 cut(s) 655, 670, 703, 801
Hpy99I CGWCG 2 cut(s) 224, 333
HpyAV CCTTC 7 cut(s) 118, 172, 292, 353, 934, 1011, 1155
HpyCH4III ACNGT 9 cut(s) 118, 143, 203, 697, 728, 805, 880, 1181, 1214
HpyCH4V TGCA 8 cut(s) 146, 414, 731, 1010, 1019, 1041, 1163, 1191
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 230, 389, 1016
HpyF3I CTNAG 6 cut(s) 12, 455, 711, 957, 1098, 1260
Hsp92I GRCGYC 1 cut(s) 1245
Hsp92II CATG 6 cut(s) 298, 379, 638, 789, 799, 1071
HspAI GCGC 1 cut(s) 365
Kpn2I TCCGGA 1 cut(s) 898
Kzo9I GATC 8 cut(s) 84, 588, 846, 888, 901, 1025, 1046, 1135
LguI GCTCTTC 1 cut(s) 956
LmnI GCTCC 5 cut(s) 216, 259, 362, 623, 1196
Lsp1109I GCAGC 3 cut(s) 167, 236, 401
LweI GCATC 2 cut(s) 65, 1208
MaeI CTAG 1 cut(s) 915
MaeIII GTNAC 5 cut(s) 511, 791, 840, 1117, 1153
MalI GATC 8 cut(s) 86, 590, 848, 890, 903, 1027, 1048, 1137
MboI GATC 8 cut(s) 84, 588, 846, 888, 901, 1025, 1046, 1135
MboII GAAGA 7 cut(s) 446, 537, 650, 746, 973, 1114, 1237
MflI RGATCY 2 cut(s) 888, 1025
MhlI GDGCHC 2 cut(s) 385, 1206
MluCI AATT 2 cut(s) 479, 683
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 142
MroI TCCGGA 1 cut(s) 898
MseI TTAA 1 cut(s) 570
MslI CAYNNNNRTG 4 cut(s) 488, 639, 806, 1182
MspI CCGG 2 cut(s) 899, 1200
MspR9I CCNGG 2 cut(s) 504, 1201
MvaI CCWGG 1 cut(s) 504
MwoI GCNNNNNNNGC 4 cut(s) 152, 230, 389, 1016
NciI CCSGG 1 cut(s) 1201
NdeI CATATG 1 cut(s) 410
NdeII GATC 8 cut(s) 84, 588, 846, 888, 901, 1025, 1046, 1135
NlaIII CATG 6 cut(s) 298, 379, 638, 789, 799, 1071
NlaIV GGNNCC 2 cut(s) 508, 1198
NmuCI GTSAC 3 cut(s) 791, 840, 1153
NspI RCATGY 2 cut(s) 799, 1071
NspV TTCGAA 1 cut(s) 111
OliI CACNNNNGTG 1 cut(s) 1182
PagI TCATGA 1 cut(s) 634
PaqCI CACCTGC 2 cut(s) 1024, 1168
PciI ACATGT 2 cut(s) 795, 1067
PciSI GCTCTTC 1 cut(s) 956
PfeI GAWTC 5 cut(s) 135, 208, 288, 417, 494
PkrI GCNGC 3 cut(s) 157, 226, 391
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PpuMI RGGWCCY 1 cut(s) 301
PscI ACATGT 2 cut(s) 795, 1067
PshAI GACNNNNGTC 1 cut(s) 996
Psp5II RGGWCCY 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 502
PspFI CCCAGC 1 cut(s) 266
PspGI CCWGG 1 cut(s) 502
PspN4I GGNNCC 2 cut(s) 508, 1198
PspPI GGNCC 2 cut(s) 301, 333
PspPPI RGGWCCY 1 cut(s) 301
PsuI RGATCY 2 cut(s) 888, 1025
RsaI GTAC 2 cut(s) 773, 783
RsaNI GTAC 2 cut(s) 772, 782
RseI CAYNNNNRTG 4 cut(s) 488, 639, 806, 1182
SapI GCTCTTC 1 cut(s) 956
SaqAI TTAA 1 cut(s) 570
SatI GCNGC 3 cut(s) 156, 225, 390
Sau3AI GATC 8 cut(s) 84, 588, 846, 888, 901, 1025, 1046, 1135
Sau96I GGNCC 2 cut(s) 301, 333
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 2 cut(s) 504, 1201
SduI GDGCHC 2 cut(s) 385, 1206
SfaNI GCATC 2 cut(s) 65, 1208
SfcI CTRYAG 3 cut(s) 423, 1180, 1213
SfuI TTCGAA 1 cut(s) 111
SinI GGWCC 2 cut(s) 301, 333
SmiMI CAYNNNNRTG 4 cut(s) 488, 639, 806, 1182
Sse9I AATT 2 cut(s) 479, 683
SspMI CTAG 1 cut(s) 915
StyD4I CCNGG 2 cut(s) 502, 1199
TaaI ACNGT 9 cut(s) 118, 143, 203, 697, 728, 805, 880, 1181, 1214
TaqI TCGA 1 cut(s) 111
TasI AATT 2 cut(s) 479, 683
TatI WGTACW 1 cut(s) 771
TfiI GAWTC 5 cut(s) 135, 208, 288, 417, 494
Tru1I TTAA 1 cut(s) 570
Tru9I TTAA 1 cut(s) 570
TscAI CASTG 9 cut(s) 123, 218, 390, 700, 733, 849, 994, 1184, 1217
TseFI GTSAC 3 cut(s) 791, 840, 1153
TseI GCWGC 3 cut(s) 155, 224, 389
Tsp45I GTSAC 3 cut(s) 791, 840, 1153
TspGWI ACGGA 1 cut(s) 346
TspRI CASTG 9 cut(s) 123, 218, 390, 700, 733, 849, 994, 1184, 1217
VpaK11BI GGWCC 2 cut(s) 301, 333
XapI RAATTY 2 cut(s) 479, 683
XceI RCATGY 2 cut(s) 799, 1071
XspI CTAG 1 cut(s) 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.