Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

7263393 .. 7264048

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g12050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCGGCGGTGAACCATGTTTTGGCGATGATGGTGCAGAGAGAAGGAGTTCTCTCAAACGGCGGCATCAAAACTCTGACCAATCTAGTGGCCGAAGGTTTCGGTTTCATATCGAAAGCCCTTGTGGCGTCGAAGGCAGACCTTGGCGAAGGCCGGAAAGCACCGGCGGAAGTAGAGAACCCGATCAAACATGTGATCGGGGGTAAGGAGCCTTTGGATCCGACGTTTGGATGTGATGGCTGCAAGGTGATGTCTTTGGGGCTCTGGTTGGGTGTCATGGTGCCACTTGAACCAGTTGAGGACTGGAAGTCATGGCCGTCGAAGCTTCAGGGATGGTGGCCGGAAAGAATAGCAGTGACGGGATTGGGGGCTGCTACCATATGGAGGCACGTGTGGCGGAGTGTCTTGGCCGCCGTCAACGCCTTAACAAGTGACAAGGAAAATCTGGTAGGTTTTGGGAATGGGCTTGGGCTCATGGGCCTGGGGTATAGAATCAAGCCCACAAAAAAGTCAGACTTAGAATTGGGTTGTTGGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

19.21

Weight (kDa)

8.45

Isoelectric Point (pI)

22.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	280
AccB7I	CCANNNNNTGG	1 cut(s)	22
AciI	CCGC	6 cut(s)	5, 8, 63, 167, 397, 411
AclWI	GGATC	2 cut(s)	212, 225
AcoI	YGGCCR	4 cut(s)	90, 314, 338, 408
AcuI	CTGAAG	1 cut(s)	311
AcvI	CACGTG	1 cut(s)	391
AcyI	GRCGYC	1 cut(s)	128
AfiI	CCNNNNNNNGG	3 cut(s)	22, 227, 384
AflIII	ACRYGT	2 cut(s)	190, 390
AgsI	TTSAA	1 cut(s)	290
AhdI	GACNNNNNGTC	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	480
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
AlwI	GGATC	2 cut(s)	212, 225
AoxI	GGCC	7 cut(s)	90, 151, 314, 338, 408, 478, 534
ApeKI	GCWGC	2 cut(s)	240, 371
Asp700I	GAANNNNTTC	1 cut(s)	48
AspS9I	GGNCC	2 cut(s)	478, 534
AsuHPI	GGTGA	2 cut(s)	22, 259
BamHI	GGATCC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	280
BanII	GRGCYC	2 cut(s)	264, 474
BbrPI	CACGTG	1 cut(s)	391
BbvI	GCAGC	2 cut(s)	227, 358
BccI	CCATC	3 cut(s)	25, 230, 327
BceAI	ACGGC	3 cut(s)	76, 301, 398
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BciT130I	CCWGG	1 cut(s)	482
BfaI	CTAG	1 cut(s)	86
BglI	GCCNNNNNGGC	1 cut(s)	125
BisI	GCNGC	5 cut(s)	6, 64, 241, 372, 411
BlsI	GCNGC	5 cut(s)	7, 65, 242, 373, 412
Bme1390I	CCNGG	1 cut(s)	482
BmeRI	GACNNNNNGTC	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	478, 534
BmiI	GGNNCC	3 cut(s)	210, 219, 282
BmrFI	CCNGG	1 cut(s)	482
BmsI	GCATC	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	391
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	142, 481
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 227, 384
Bse118I	RCCGGY	1 cut(s)	163
Bse1I	ACTGG	2 cut(s)	293, 308
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	2 cut(s)	142, 481
BseGI	GGATG	2 cut(s)	236, 338
BseLI	CCNNNNNNNGG	3 cut(s)	22, 227, 384
BseNI	ACTGG	2 cut(s)	293, 308
BseXI	GCAGC	2 cut(s)	227, 358
BsgI	GTGCAG	1 cut(s)	56
BshFI	GGCC	7 cut(s)	92, 153, 316, 340, 410, 480, 536
BshNI	GGYRCC	1 cut(s)	280
BsiSI	CCGG	3 cut(s)	154, 164, 341
BslI	CCNNNNNNNGG	3 cut(s)	22, 227, 384
BsnI	GGCC	7 cut(s)	92, 153, 316, 340, 410, 480, 536
Bsp1286I	GDGCHC	2 cut(s)	264, 474
Bsp143I	GATC	3 cut(s)	183, 195, 217
BspACI	CCGC	6 cut(s)	5, 8, 63, 167, 397, 411
BspANI	GGCC	7 cut(s)	92, 153, 316, 340, 410, 480, 536
BspLI	GGNNCC	3 cut(s)	210, 219, 282
BspPI	GGATC	2 cut(s)	212, 225
BspT107I	GGYRCC	1 cut(s)	280
BsrFI	RCCGGY	1 cut(s)	163
BsrI	ACTGG	2 cut(s)	293, 308
BssAI	RCCGGY	1 cut(s)	163
BssECI	CCNNGG	2 cut(s)	142, 481
BssMI	GATC	3 cut(s)	183, 195, 217
BssNI	GRCGYC	1 cut(s)	128
BssT1I	CCWWGG	1 cut(s)	142
Bst2UI	CCWGG	1 cut(s)	482
BstACI	GRCGYC	1 cut(s)	128
BstBAI	YACGTR	1 cut(s)	391
BstDEI	CTNAG	1 cut(s)	517
BstF5I	GGATG	2 cut(s)	236, 338
BstKTI	GATC	3 cut(s)	186, 198, 220
BstMBI	GATC	3 cut(s)	183, 195, 217
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 134, 322, 394, 419
BstNI	CCWGG	1 cut(s)	482
BstNSI	RCATGY	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	480
BstV1I	GCAGC	2 cut(s)	227, 358
BstX2I	RGATCY	1 cut(s)	217
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	217
BsuRI	GGCC	7 cut(s)	92, 153, 316, 340, 410, 480, 536
BtgZI	GCGATG	1 cut(s)	41
BtsCI	GGATG	2 cut(s)	236, 338
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	360
Cfr10I	RCCGGY	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	478, 534
CseI	GACGC	1 cut(s)	117
CviAII	CATG	5 cut(s)	17, 191, 277, 312, 475
DdeI	CTNAG	1 cut(s)	517
DpnI	GATC	3 cut(s)	185, 197, 219
DpnII	GATC	3 cut(s)	183, 195, 217
DriI	GACNNNNNGTC	1 cut(s)	307
EaeI	YGGCCR	4 cut(s)	90, 314, 338, 408
Eam1105I	GACNNNNNGTC	1 cut(s)	307
EciI	GGCGGA	2 cut(s)	182, 412
Eco130I	CCWWGG	1 cut(s)	142
Eco24I	GRGCYC	2 cut(s)	264, 474
Eco57I	CTGAAG	1 cut(s)	311
Eco72I	CACGTG	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	480
EcoT14I	CCWWGG	1 cut(s)	142
EcoT38I	GRGCYC	2 cut(s)	264, 474
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	5 cut(s)	20, 194, 280, 315, 478
FaiI	YATR	9 cut(s)	18, 110, 192, 278, 313, 380, 382, 476, 489
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FatI	CATG	5 cut(s)	16, 190, 276, 311, 474
FauNDI	CATATG	1 cut(s)	380
Fnu4HI	GCNGC	5 cut(s)	6, 64, 241, 372, 411
FokI	GGATG	2 cut(s)	243, 345
FriOI	GRGCYC	2 cut(s)	264, 474
Fsp4HI	GCNGC	5 cut(s)	6, 64, 241, 372, 411
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	5 cut(s)	6, 64, 241, 372, 411
HaeIII	GGCC	7 cut(s)	92, 153, 316, 340, 410, 480, 536
HapII	CCGG	3 cut(s)	154, 164, 341
HgaI	GACGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	5 cut(s)	20, 194, 280, 315, 478
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	323
HinfI	GANTC	1 cut(s)	492
HpaII	CCGG	3 cut(s)	154, 164, 341
HphI	GGTGA	2 cut(s)	22, 259
Hpy166II	GTNNAC	2 cut(s)	13, 418
Hpy188I	TCNGA	3 cut(s)	78, 222, 514
Hpy8I	GTNNAC	2 cut(s)	13, 418
Hpy99I	CGWCG	3 cut(s)	133, 226, 322
HpyAV	CCTTC	4 cut(s)	38, 89, 127, 143
HpyCH4IV	ACGT	2 cut(s)	224, 390
HpyCH4V	TGCA	2 cut(s)	37, 243
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 134, 322, 394, 419
HpyF3I	CTNAG	1 cut(s)	517
HpySE526I	ACGT	2 cut(s)	224, 390
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	5 cut(s)	20, 194, 280, 315, 478
Kzo9I	GATC	3 cut(s)	183, 195, 217
LmnI	GCTCC	1 cut(s)	208
Lsp1109I	GCAGC	2 cut(s)	227, 358
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	2 cut(s)	224, 390
MaeIII	GTNAC	2 cut(s)	355, 431
MalI	GATC	3 cut(s)	185, 197, 219
MboI	GATC	3 cut(s)	183, 195, 217
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	2 cut(s)	264, 474
MluCI	AATT	1 cut(s)	521
MmeI	TCCRAC	1 cut(s)	245
MnlI	CCTC	2 cut(s)	292, 378
MroXI	GAANNNNTTC	1 cut(s)	48
MseI	TTAA	1 cut(s)	425
MspI	CCGG	3 cut(s)	154, 164, 341
MspR9I	CCNGG	1 cut(s)	482
MvaI	CCWGG	1 cut(s)	482
MwoI	GCNNNNNNNGC	5 cut(s)	125, 134, 322, 394, 419
NdeI	CATATG	1 cut(s)	380
NdeII	GATC	3 cut(s)	183, 195, 217
NlaIII	CATG	5 cut(s)	20, 194, 280, 315, 478
NlaIV	GGNNCC	3 cut(s)	210, 219, 282
NmuCI	GTSAC	2 cut(s)	355, 431
NspI	RCATGY	1 cut(s)	194
PciI	ACATGT	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	492
PflMI	CCANNNNNTGG	1 cut(s)	22
PkrI	GCNGC	5 cut(s)	7, 65, 242, 373, 412
PmaCI	CACGTG	1 cut(s)	391
PmlI	CACGTG	1 cut(s)	391
Ppu21I	YACGTR	1 cut(s)	391
PscI	ACATGT	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	480
PspCI	CACGTG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	480
PspN4I	GGNNCC	3 cut(s)	210, 219, 282
PspPI	GGNCC	2 cut(s)	478, 534
PsuI	RGATCY	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	425
SatI	GCNGC	5 cut(s)	6, 64, 241, 372, 411
Sau3AI	GATC	3 cut(s)	183, 195, 217
Sau96I	GGNCC	2 cut(s)	478, 534
ScrFI	CCNGG	1 cut(s)	482
SduI	GDGCHC	2 cut(s)	264, 474
SetI	ASST	7 cut(s)	100, 144, 227, 249, 327, 393, 454
SfaNI	GCATC	1 cut(s)	75
SgrAI	CRCCGGYG	1 cut(s)	163
Sse9I	AATT	1 cut(s)	521
SsiI	CCGC	6 cut(s)	5, 8, 63, 167, 397, 411
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	480
StyI	CCWWGG	1 cut(s)	142
TaiI	ACGT	2 cut(s)	227, 393
TaqI	TCGA	3 cut(s)	113, 131, 320
TasI	AATT	1 cut(s)	521
TauI	GCSGC	3 cut(s)	8, 66, 413
TfiI	GAWTC	1 cut(s)	492
Tru1I	TTAA	1 cut(s)	425
Tru9I	TTAA	1 cut(s)	425
TscAI	CASTG	1 cut(s)	360
TseFI	GTSAC	2 cut(s)	355, 431
TseI	GCWGC	2 cut(s)	240, 371
Tsp45I	GTSAC	2 cut(s)	355, 431
TspDTI	ATGAA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	360
Van91I	CCANNNNNTGG	1 cut(s)	22
XceI	RCATGY	1 cut(s)	194
XcmI	CCANNNNNNNNNTGG	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.