Rmu_sc0003433.1_g000009

protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003433.1
Physical Location & Seq
Reverse (-)
37349 .. 37615
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003433.1_g000009.1.cds

Sequence Viewer

Length: 267 bp
atgatgtatgataaacgagataaatgggctgaagcatttgtgagtggacattttttcgctcgcatgcgtagcatgcagcgatgtgaaggcatgcataggtatgtgaaggatagtctcagcttcagtggagtgaaattgattgaactcattccgcagcttgataaagcattggaacgacttagaaataaagtagctgaagaagattttcgatcgaataactccgctcatgtactttctgttaacgttagtgatccgtgggatctctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

88

Amino Acids

10.34

Weight (kDa)

7.92

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 224
AciI CCGC 2 cut(s) 152, 222
AclI AACGTT 1 cut(s) 243
AclWI GGATC 1 cut(s) 245
AcuI CTGAAG 3 cut(s) 51, 106, 216
AfaI GTAC 1 cut(s) 231
AgsI TTSAA 1 cut(s) 143
AluBI AGCT 3 cut(s) 120, 157, 194
AluI AGCT 3 cut(s) 120, 157, 194
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 245
ApeKI GCWGC 2 cut(s) 76, 154
Asp700I GAANNNNTTC 2 cut(s) 147, 204
BbvI GCAGC 2 cut(s) 88, 166
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 265
BisI GCNGC 2 cut(s) 77, 155
BlsI GCNGC 2 cut(s) 78, 156
BsaJI CCNNGG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 130
BseXI GCAGC 2 cut(s) 88, 166
Bsh1285I CGRYCG 1 cut(s) 212
BsiEI CGRYCG 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 119
Bsp143I GATC 3 cut(s) 209, 250, 259
BspACI CCGC 2 cut(s) 152, 222
BspCNI CTCAG 1 cut(s) 129
BspPI GGATC 1 cut(s) 245
BsrBI CCGCTC 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 3 cut(s) 209, 250, 259
BstC8I GCNNGC 4 cut(s) 61, 65, 74, 92
BstDEI CTNAG 2 cut(s) 116, 179
BstDSI CCRYGG 1 cut(s) 254
BstKTI GATC 3 cut(s) 212, 253, 262
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 3 cut(s) 209, 250, 259
BstMCI CGRYCG 1 cut(s) 212
BstMWI GCNNNNNNNGC 2 cut(s) 69, 73
BstNSI RCATGY 3 cut(s) 67, 76, 94
BstV1I GCAGC 2 cut(s) 88, 166
BstX2I RGATCY 1 cut(s) 259
BstYI RGATCY 1 cut(s) 259
BtgI CCRYGG 1 cut(s) 254
BtgZI GCGATG 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 130
Cac8I GCNNGC 4 cut(s) 61, 65, 74, 92
Csp6I GTAC 1 cut(s) 230
CviAII CATG 4 cut(s) 64, 73, 91, 227
CviJI RGCY 4 cut(s) 29, 120, 157, 194
CviKI_1 RGCY 4 cut(s) 29, 120, 157, 194
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 2 cut(s) 116, 179
DpnI GATC 3 cut(s) 211, 252, 261
DpnII GATC 3 cut(s) 209, 250, 259
Eco57I CTGAAG 3 cut(s) 51, 106, 216
EcoT22I ATGCAT 1 cut(s) 96
FaeI CATG 4 cut(s) 67, 76, 94, 230
FaiI YATR 7 cut(s) 9, 65, 74, 92, 96, 102, 228
FatI CATG 4 cut(s) 63, 72, 90, 226
Fnu4HI GCNGC 2 cut(s) 77, 155
Fsp4HI GCNGC 2 cut(s) 77, 155
FspBI CTAG 1 cut(s) 265
GluI GCNGC 2 cut(s) 77, 155
Hin1II CATG 4 cut(s) 67, 76, 94, 230
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HpaI GTTAAC 1 cut(s) 241
Hpy166II GTNNAC 2 cut(s) 47, 241
Hpy8I GTNNAC 2 cut(s) 47, 241
HpyAV CCTTC 2 cut(s) 80, 100
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 2 cut(s) 76, 94
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 73
HpyF3I CTNAG 2 cut(s) 116, 179
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 4 cut(s) 67, 76, 94, 230
KspAI GTTAAC 1 cut(s) 241
Kzo9I GATC 3 cut(s) 209, 250, 259
Lsp1109I GCAGC 2 cut(s) 88, 166
MaeI CTAG 1 cut(s) 265
MaeII ACGT 1 cut(s) 243
MalI GATC 3 cut(s) 211, 252, 261
MbiI CCGCTC 1 cut(s) 224
MboI GATC 3 cut(s) 209, 250, 259
MboII GAAGA 2 cut(s) 209, 212
MflI RGATCY 1 cut(s) 259
MluCI AATT 1 cut(s) 134
Mph1103I ATGCAT 1 cut(s) 96
MroXI GAANNNNTTC 2 cut(s) 147, 204
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 99
MwoI GCNNNNNNNGC 2 cut(s) 69, 73
NdeII GATC 3 cut(s) 209, 250, 259
NlaIII CATG 4 cut(s) 67, 76, 94, 230
NsiI ATGCAT 1 cut(s) 96
NspI RCATGY 3 cut(s) 67, 76, 94
PaeI GCATGC 3 cut(s) 67, 76, 94
PdmI GAANNNNTTC 2 cut(s) 147, 204
PkrI GCNGC 2 cut(s) 78, 156
Ple19I CGATCG 1 cut(s) 212
Psp1406I AACGTT 1 cut(s) 243
PsuI RGATCY 1 cut(s) 259
PvuI CGATCG 1 cut(s) 212
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 2 cut(s) 77, 155
Sau3AI GATC 3 cut(s) 209, 250, 259
SetI ASST 5 cut(s) 101, 122, 159, 196, 246
SgeI CNNG 7 cut(s) 29, 72, 76, 85, 103, 170, 239
SmiMI CAYNNNNRTG 1 cut(s) 99
SphI GCATGC 3 cut(s) 67, 76, 94
Sse9I AATT 1 cut(s) 134
SsiI CCGC 2 cut(s) 152, 222
SspMI CTAG 1 cut(s) 265
TaiI ACGT 1 cut(s) 246
TaqI TCGA 2 cut(s) 208, 212
TasI AATT 1 cut(s) 134
TatI WGTACW 1 cut(s) 229
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 1 cut(s) 130
TseI GCWGC 2 cut(s) 76, 154
TspGWI ACGGA 1 cut(s) 243
TspRI CASTG 1 cut(s) 130
XceI RCATGY 3 cut(s) 67, 76, 94
XmnI GAANNNNTTC 2 cut(s) 147, 204
XspI CTAG 1 cut(s) 265
Zsp2I ATGCAT 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.