Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Reverse (-)

9571808 .. 9575491

Gene Structure 3684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00226140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCCCAACGGGTTGCTACCAAGTGCCAACCAGCCACTTTCAAAGAGCCATGGGCCATATCTCTATGCAACAAAAATATGGCTGCAACGATCTGGGGTCAAGGCCCAAGGCTATTCCCTTTTGGACCAGACCTCCCACCACAAATTCAAAGGGAAATGGGGGCAATTCCATGTCTCATGCTGAAAATGAATCTTCGCATTGAGGAAAGAATCAAGGCGGCTAGGGCCCGAGGAAAGAATCGAGGCAGCCGGGGCCTAAGGAAAGATTCAGGACTCGCCAAGGCCCGAGGAAAGATTTGGGGCGGCCGGGAAGGTCGGGGCCCGAGGAAAGAATCGGGGCGGCCAAGGCCTCGGGGAAATAATCGGGGCGCCCGGGGCTTGAGGAAAGATTCGGGACTGCCAGGGCTCGAGGAAATATTTGAGGCAAGATTCGAAACAGCTAGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

16.62

Weight (kDa)

11.4

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	368
AciI	CCGC	3 cut(s)	218, 303, 340
AcoI	YGGCCR	2 cut(s)	304, 341
AcsI	RAATTY	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	369
AgsI	TTSAA	2 cut(s)	43, 149
AjnI	CCWGG	1 cut(s)	400
AluBI	AGCT	1 cut(s)	440
AluI	AGCT	1 cut(s)	440
Alw26I	GTCTC	1 cut(s)	179
Ama87I	CYCGRG	6 cut(s)	228, 285, 322, 351, 372, 407
ApaI	GGGCCC	2 cut(s)	229, 323
ApeKI	GCWGC	2 cut(s)	83, 246
ApoI	RAATTY	1 cut(s)	144
AspLEI	GCGC	1 cut(s)	371
AsuC2I	CCSGG	4 cut(s)	251, 308, 373, 374
AsuII	TTCGAA	1 cut(s)	432
AvaI	CYCGRG	6 cut(s)	228, 285, 322, 351, 372, 407
AvaII	GGWCC	1 cut(s)	125
AxyI	CCTNAGG	1 cut(s)	257
BaeGI	GKGCMC	2 cut(s)	229, 323
BanI	GGYRCC	1 cut(s)	368
BanII	GRGCYC	3 cut(s)	229, 323, 408
BbvI	GCAGC	2 cut(s)	70, 258
BciT130I	CCWGG	1 cut(s)	402
BcnI	CCSGG	4 cut(s)	251, 308, 373, 374
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	2 cut(s)	222, 441
BfoI	RGCGCY	1 cut(s)	372
BisI	GCNGC	5 cut(s)	84, 219, 247, 304, 341
BlsI	GCNGC	5 cut(s)	85, 220, 248, 305, 342
Bme1390I	CCNGG	5 cut(s)	251, 308, 373, 374, 402
Bme18I	GGWCC	1 cut(s)	125
BmeT110I	CYCGRG	6 cut(s)	228, 285, 322, 351, 372, 407
BmiI	GGNNCC	5 cut(s)	227, 254, 320, 321, 370
BmrFI	CCNGG	5 cut(s)	251, 308, 373, 374, 402
Bpu14I	TTCGAA	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	400
BpuMI	CCSGG	4 cut(s)	251, 308, 373, 374
BsaHI	GRCGYC	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bse21I	CCTNAGG	1 cut(s)	257
BseBI	CCWGG	1 cut(s)	402
BseSI	GKGCMC	2 cut(s)	229, 323
BseX3I	CGGCCG	1 cut(s)	304
BseXI	GCAGC	2 cut(s)	70, 258
Bsh1285I	CGRYCG	1 cut(s)	307
BshNI	GGYRCC	1 cut(s)	368
BsiEI	CGRYCG	1 cut(s)	307
BsiHKCI	CYCGRG	6 cut(s)	228, 285, 322, 351, 372, 407
BsiSI	CCGG	3 cut(s)	250, 307, 373
BslFI	GGGAC	1 cut(s)	408
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	408
BsoBI	CYCGRG	6 cut(s)	228, 285, 322, 351, 372, 407
Bsp119I	TTCGAA	1 cut(s)	432
Bsp120I	GGGCCC	2 cut(s)	225, 319
Bsp1286I	GDGCHC	3 cut(s)	229, 323, 408
Bsp143I	GATC	1 cut(s)	90
Bsp19I	CCATGG	1 cut(s)	50
BspACI	CCGC	3 cut(s)	218, 303, 340
BspLI	GGNNCC	5 cut(s)	227, 254, 320, 321, 370
BspT104I	TTCGAA	1 cut(s)	432
BspT107I	GGYRCC	1 cut(s)	368
BssMI	GATC	1 cut(s)	90
BssNI	GRCGYC	1 cut(s)	369
BssT1I	CCWWGG	4 cut(s)	50, 107, 279, 344
Bst2UI	CCWGG	1 cut(s)	402
BstACI	GRCGYC	1 cut(s)	369
BstBI	TTCGAA	1 cut(s)	432
BstDEI	CTNAG	1 cut(s)	257
BstDSI	CCRYGG	1 cut(s)	50
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	1 cut(s)	93
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	1 cut(s)	90
BstMCI	CGRYCG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 252, 346, 375
BstNI	CCWGG	1 cut(s)	402
BstSCI	CCNGG	5 cut(s)	249, 306, 371, 372, 400
BstSLI	GKGCMC	2 cut(s)	229, 323
BstV1I	GCAGC	2 cut(s)	70, 258
BstZI	CGGCCG	1 cut(s)	304
Bsu36I	CCTNAGG	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	50
CfoI	GCGC	1 cut(s)	371
Cfr9I	CCCGGG	1 cut(s)	372
CviAII	CATG	3 cut(s)	51, 171, 178
DdeI	CTNAG	1 cut(s)	257
DinI	GGCGCC	1 cut(s)	370
DpnI	GATC	1 cut(s)	92
DpnII	GATC	1 cut(s)	90
EaeI	YGGCCR	2 cut(s)	304, 341
EagI	CGGCCG	1 cut(s)	304
EclXI	CGGCCG	1 cut(s)	304
Eco130I	CCWWGG	4 cut(s)	50, 107, 279, 344
Eco147I	AGGCCT	1 cut(s)	349
Eco24I	GRGCYC	3 cut(s)	229, 323, 408
Eco47I	GGWCC	1 cut(s)	125
Eco52I	CGGCCG	1 cut(s)	304
Eco81I	CCTNAGG	1 cut(s)	257
Eco88I	CYCGRG	6 cut(s)	228, 285, 322, 351, 372, 407
EcoO109I	RGGNCCY	3 cut(s)	225, 253, 319
EcoRII	CCWGG	1 cut(s)	400
EcoT14I	CCWWGG	4 cut(s)	50, 107, 279, 344
EcoT38I	GRGCYC	3 cut(s)	229, 323, 408
EgeI	GGCGCC	1 cut(s)	370
EheI	GGCGCC	1 cut(s)	370
ErhI	CCWWGG	4 cut(s)	50, 107, 279, 344
FaeI	CATG	3 cut(s)	54, 174, 181
FaiI	YATR	6 cut(s)	52, 59, 67, 80, 172, 179
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	3 cut(s)	50, 170, 177
Fnu4HI	GCNGC	5 cut(s)	84, 219, 247, 304, 341
FriOI	GRGCYC	3 cut(s)	229, 323, 408
Fsp4HI	GCNGC	5 cut(s)	84, 219, 247, 304, 341
FspBI	CTAG	2 cut(s)	222, 441
GlaI	GCGC	1 cut(s)	370
GluI	GCNGC	5 cut(s)	84, 219, 247, 304, 341
HaeII	RGCGCY	1 cut(s)	372
HapII	CCGG	3 cut(s)	250, 307, 373
HhaI	GCGC	1 cut(s)	371
Hin1I	GRCGYC	1 cut(s)	369
Hin1II	CATG	3 cut(s)	54, 174, 181
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HinfI	GANTC	8 cut(s)	190, 210, 238, 266, 273, 332, 389, 429
HpaII	CCGG	3 cut(s)	250, 307, 373
Hpy188III	TCNNGA	2 cut(s)	270, 393
HpyAV	CCTTC	1 cut(s)	305
HpyCH4V	TGCA	2 cut(s)	69, 86
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 252, 346, 375
HpyF3I	CTNAG	1 cut(s)	257
Hsp92I	GRCGYC	1 cut(s)	369
Hsp92II	CATG	3 cut(s)	54, 174, 181
HspAI	GCGC	1 cut(s)	369
KasI	GGCGCC	1 cut(s)	368
Kzo9I	GATC	1 cut(s)	90
LpnPI	CCDG	9 cut(s)	45, 79, 141, 255, 263, 320, 386, 387, 414
Lsp1109I	GCAGC	2 cut(s)	70, 258
MaeI	CTAG	2 cut(s)	222, 441
MalI	GATC	1 cut(s)	92
MboI	GATC	1 cut(s)	90
MboII	GAAGA	1 cut(s)	185
MhlI	GDGCHC	3 cut(s)	229, 323, 408
MluCI	AATT	2 cut(s)	144, 165
Mly113I	GGCGCC	1 cut(s)	369
MlyI	GAGTC	1 cut(s)	267
MspI	CCGG	3 cut(s)	250, 307, 373
MspR9I	CCNGG	5 cut(s)	251, 308, 373, 374, 402
MvaI	CCWGG	1 cut(s)	402
MwoI	GCNNNNNNNGC	4 cut(s)	224, 252, 346, 375
NarI	GGCGCC	1 cut(s)	369
NciI	CCSGG	4 cut(s)	251, 308, 373, 374
NcoI	CCATGG	1 cut(s)	50
NdeII	GATC	1 cut(s)	90
NlaIII	CATG	3 cut(s)	54, 174, 181
NlaIV	GGNNCC	5 cut(s)	227, 254, 320, 321, 370
NspV	TTCGAA	1 cut(s)	432
PaeR7I	CTCGAG	1 cut(s)	407
PceI	AGGCCT	1 cut(s)	349
PfeI	GAWTC	7 cut(s)	190, 210, 238, 266, 332, 389, 429
PkrI	GCNGC	5 cut(s)	85, 220, 248, 305, 342
PleI	GAGTC	1 cut(s)	267
PluTI	GGCGCC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	5 cut(s)	227, 254, 320, 321, 370
PspOMI	GGGCCC	2 cut(s)	225, 319
PspXI	VCTCGAGB	1 cut(s)	407
SatI	GCNGC	5 cut(s)	84, 219, 247, 304, 341
Sau3AI	GATC	1 cut(s)	90
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	5 cut(s)	251, 308, 373, 374, 402
SduI	GDGCHC	3 cut(s)	229, 323, 408
SetI	ASST	3 cut(s)	135, 316, 442
SfoI	GGCGCC	1 cut(s)	370
Sfr274I	CTCGAG	1 cut(s)	407
SfuI	TTCGAA	1 cut(s)	432
SinI	GGWCC	1 cut(s)	125
SlaI	CTCGAG	1 cut(s)	407
SmaI	CCCGGG	1 cut(s)	374
SmlI	CTYRAG	2 cut(s)	379, 407
SmoI	CTYRAG	2 cut(s)	379, 407
Sse9I	AATT	2 cut(s)	144, 165
SseBI	AGGCCT	1 cut(s)	349
SsiI	CCGC	3 cut(s)	218, 303, 340
SspDI	GGCGCC	1 cut(s)	368
SspI	AATATT	1 cut(s)	417
SspMI	CTAG	2 cut(s)	222, 441
StuI	AGGCCT	1 cut(s)	349
StyD4I	CCNGG	5 cut(s)	249, 306, 371, 372, 400
StyI	CCWWGG	4 cut(s)	50, 107, 279, 344
TaqI	TCGA	3 cut(s)	241, 408, 432
TasI	AATT	2 cut(s)	144, 165
TauI	GCSGC	3 cut(s)	221, 306, 343
TfiI	GAWTC	7 cut(s)	190, 210, 238, 266, 332, 389, 429
TseI	GCWGC	2 cut(s)	83, 246
TspDTI	ATGAA	1 cut(s)	203
TspMI	CCCGGG	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	125
XapI	RAATTY	1 cut(s)	144
XhoI	CTCGAG	1 cut(s)	407
XmaI	CCCGGG	1 cut(s)	372
XspI	CTAG	2 cut(s)	222, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.