RLG00000019918

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000607
Physical Location & Seq
Forward (+)
58522017 .. 58523625
1609 bp
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UTR
Exon/CDS
Intron
RLM00000019918

Sequence Viewer

Length: 483 bp
ATGTCTTCACTGGAAGAAACATCCCCCGTTGTGAACTCGGATCACAAGAAGCCTAAACTCGATATTGCAGGTAGCCTTATGGTCCCTGAATTGGATGAAAAGCAGAAGCATATCTCTGATGAATATGAGAAGGAAGATGACTCAAAGCCTAGACATGCACACACATGTTCCACTGCTGAAGAAGGATTTTGCATCCATATCGCCGATGTCACTAAAAGACCATGCGGCACATGCGCACACTTGTACAACGTTGGTTCATACAACAAAAAGAGATGCAGTTGTATCTTATGCCACTGGGAAGAGGAACAAGATGAGAACGCCAATTCACCTCCCTCAGACCTTTTTGAAGAAATCAGTTTGCCAGAAGAGTCTATTGGCTTGAGCAAGTCGGTCTACTCATTAAGGAACAATGATATTGATGAAAAGTTCCCTTTTATTGGGCTCCTCAATGGTGTCTACTTGCCTAATGGTGTTGTAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.94

Weight (kDa)

4.84

Isoelectric Point (pI)

65.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 235
Acc36I ACCTGC 1 cut(s) 59
AccI GTMKAC 2 cut(s) 393, 456
AciI CCGC 1 cut(s) 225
AclI AACGTT 1 cut(s) 249
AclWI GGATC 1 cut(s) 48
AcuI CTGAAG 1 cut(s) 198
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 2 cut(s) 91, 437
AflIII ACRYGT 1 cut(s) 164
AgsI TTSAA 1 cut(s) 347
AjuI GAANNNNNNNTTGG 2 cut(s) 357, 389
AlwI GGATC 1 cut(s) 48
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 318
AvaII GGWCC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 444
BcgI CGANNNNNNTGC 2 cut(s) 181, 215
BfaI CTAG 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 59
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 2 cut(s) 84, 443
BmrI ACTGGG 1 cut(s) 304
BmsI GCATC 2 cut(s) 201, 263
BmuI ACTGGG 1 cut(s) 304
BpuEI CTTGAG 1 cut(s) 400
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 437
Bse1I ACTGG 2 cut(s) 15, 299
BseGI GGATG 3 cut(s) 20, 100, 192
BseLI CCNNNNNNNGG 2 cut(s) 91, 437
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 2 cut(s) 15, 299
BseRI GAGGAG 1 cut(s) 434
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 2 cut(s) 91, 437
BsmFI GGGAC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 444
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 1 cut(s) 225
BspCNI CTCAG 1 cut(s) 347
BspLI GGNNCC 2 cut(s) 84, 443
BspMI ACCTGC 1 cut(s) 59
BspPI GGATC 1 cut(s) 48
BsrGI TGTACA 1 cut(s) 243
BsrI ACTGG 2 cut(s) 15, 299
BssMI GATC 1 cut(s) 40
Bst6I CTCTTC 2 cut(s) 294, 360
BstAUI TGTACA 1 cut(s) 243
BstDEI CTNAG 1 cut(s) 334
BstF5I GGATG 3 cut(s) 20, 100, 192
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 1 cut(s) 231
BstNSI RCATGY 3 cut(s) 158, 168, 234
BtsCI GGATG 3 cut(s) 20, 100, 192
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 3 cut(s) 8, 171, 292
BveI ACCTGC 1 cut(s) 59
CfoI GCGC 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 244
CviAII CATG 4 cut(s) 155, 165, 222, 231
CviJI RGCY 5 cut(s) 52, 75, 148, 378, 442
CviKI_1 RGCY 5 cut(s) 52, 75, 148, 378, 442
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 334
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 294, 360
EarI CTCTTC 2 cut(s) 294, 360
Eco24I GRGCYC 1 cut(s) 444
Eco47I GGWCC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 444
FaeI CATG 4 cut(s) 158, 168, 225, 234
FaqI GGGAC 1 cut(s) 68
FatI CATG 4 cut(s) 154, 164, 221, 230
FblI GTMKAC 2 cut(s) 393, 456
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 3 cut(s) 7, 107, 179
FriOI GRGCYC 1 cut(s) 444
Fsp4HI GCNGC 1 cut(s) 226
FspAI RTGCGCAY 1 cut(s) 235
FspBI CTAG 1 cut(s) 150
FspI TGCGCA 1 cut(s) 235
GlaI GCGC 1 cut(s) 235
GluI GCNGC 1 cut(s) 226
HhaI GCGC 1 cut(s) 236
Hin1II CATG 4 cut(s) 158, 168, 225, 234
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HinfI GANTC 2 cut(s) 140, 368
HphI GGTGA 1 cut(s) 318
Hpy166II GTNNAC 3 cut(s) 34, 394, 457
Hpy188I TCNGA 3 cut(s) 40, 118, 337
Hpy8I GTNNAC 3 cut(s) 34, 394, 457
HpyAV CCTTC 2 cut(s) 124, 176
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 4 cut(s) 68, 158, 192, 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 231
HpyF3I CTNAG 1 cut(s) 334
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 4 cut(s) 158, 168, 225, 234
HspAI GCGC 1 cut(s) 234
Kzo9I GATC 1 cut(s) 40
LmnI GCTCC 1 cut(s) 447
LpnPI CCDG 4 cut(s) 54, 99, 280, 375
LweI GCATC 2 cut(s) 201, 263
MaeI CTAG 1 cut(s) 150
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 208
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 6 cut(s) 26, 146, 191, 311, 359, 377
MhlI GDGCHC 1 cut(s) 444
MluCI AATT 2 cut(s) 89, 322
MlyI GAGTC 2 cut(s) 134, 377
MnlI CCTC 4 cut(s) 295, 339, 343, 455
MseI TTAA 1 cut(s) 401
MslI CAYNNNNRTG 1 cut(s) 163
MwoI GCNNNNNNNGC 1 cut(s) 231
NdeII GATC 1 cut(s) 40
NlaIII CATG 4 cut(s) 158, 168, 225, 234
NlaIV GGNNCC 2 cut(s) 84, 443
NmuCI GTSAC 1 cut(s) 208
NsbI TGCGCA 1 cut(s) 235
NspI RCATGY 3 cut(s) 158, 168, 234
PciI ACATGT 1 cut(s) 164
PkrI GCNGC 1 cut(s) 227
PleI GAGTC 2 cut(s) 134, 376
PpsI GAGTC 2 cut(s) 134, 376
PscI ACATGT 1 cut(s) 164
Psp1406I AACGTT 1 cut(s) 249
PspN4I GGNNCC 2 cut(s) 84, 443
PspPI GGNCC 1 cut(s) 82
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 163
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 2 cut(s) 134, 377
SduI GDGCHC 1 cut(s) 444
SetI ASST 4 cut(s) 73, 252, 331, 342
SfaNI GCATC 2 cut(s) 201, 263
SinI GGWCC 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 163
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
Sse9I AATT 2 cut(s) 89, 322
SsiI CCGC 1 cut(s) 225
SspMI CTAG 1 cut(s) 150
TaiI ACGT 1 cut(s) 252
TaqI TCGA 1 cut(s) 60
TaqII GACCGA 1 cut(s) 379
TasI AATT 2 cut(s) 89, 322
TatI WGTACW 1 cut(s) 243
TauI GCSGC 1 cut(s) 228
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TscAI CASTG 3 cut(s) 15, 178, 299
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 4 cut(s) 111, 135, 246, 435
TspRI CASTG 3 cut(s) 15, 178, 299
VpaK11BI GGWCC 1 cut(s) 82
XceI RCATGY 3 cut(s) 158, 168, 234
XmiI GTMKAC 2 cut(s) 393, 456
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.