Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Reverse (-)

31780293 .. 31783779

Gene Structure 3487 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33572.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGAAAAGCTGCAGCACTTGAAAAACAGCTTGCCTGATCAGGTTGTTGTTCAGCGCGTCGACGAGAGGCTATCTGCACTAGCCAACTGCATTGCGTGCAATGATCATGTTGCTCTCTACACATACTGGTCTCGACAGGGTCTTCTTCTCATCTGTTTCGGCTTCGGAGGGGATGGGTACTCCGAGGTTAAGCATGTTGATGCGAGAGCAATCCCAGGATGGGTGACCTACTGGGAAGCTGCTCCTGAGCTGCCGGAAACAAAACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000054 GO:0000460 GO:0000470 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006403 GO:0006405 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010154 GO:0010467 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016072 GO:0022414 GO:0022607 GO:0022613 GO:0022618 GO:0030684 GO:0030687 GO:0031503 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032870 GO:0032991 GO:0033036 GO:0033750 GO:0033993 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034660 GO:0042221 GO:0042254 GO:0042273 GO:0042886 GO:0043021 GO:0043023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046483 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050896 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051716 GO:0061458 GO:0065003 GO:0070013 GO:0070727 GO:0070887 GO:0071166 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071426 GO:0071428 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0090304 GO:0097305 GO:0097306 GO:1901360 GO:1901700 GO:1901701 GO:1902626 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

eIF-6

Protein Analysis

90

Amino Acids

10.03

Weight (kDa)

5.46

Isoelectric Point (pI)

23.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF-6	PF01912	2 - 39	4.2e-09	eIF-6 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	1 cut(s)	57
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	220
AgsI	TTSAA	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	4 cut(s)	10, 30, 239, 250
AluI	AGCT	4 cut(s)	10, 30, 239, 250
Alw26I	GTCTC	1 cut(s)	135
ApeKI	GCWGC	4 cut(s)	10, 13, 239, 250
AspLEI	GCGC	1 cut(s)	57
AsuHPI	GGTGA	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	25, 226, 237
BccI	CCATC	2 cut(s)	167, 213
BciT130I	CCWGG	1 cut(s)	216
BclI	TGATCA	2 cut(s)	37, 103
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	11
BisI	GCNGC	4 cut(s)	11, 14, 240, 251
BlsI	GCNGC	4 cut(s)	12, 15, 241, 252
Bme1390I	CCNGG	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	216
BmrI	ACTGGG	1 cut(s)	241
BmsI	GCATC	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	241
BpiI	GAAGAC	1 cut(s)	134
Bpu10I	CCTNAGC	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	135
BsaJI	CCNNGG	2 cut(s)	183, 214
Bsc4I	CCNNNNNNNGG	1 cut(s)	220
Bse1I	ACTGG	2 cut(s)	131, 236
Bse3DI	GCAATG	2 cut(s)	90, 106
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	2 cut(s)	183, 214
BseGI	GGATG	2 cut(s)	178, 224
BseLI	CCNNNNNNNGG	1 cut(s)	220
BseMI	GCAATG	2 cut(s)	90, 106
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	2 cut(s)	131, 236
BseXI	GCAGC	3 cut(s)	25, 226, 237
BsgI	GTGCAG	1 cut(s)	60
Bsh1236I	CGCG	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	220
BsmAI	GTCTC	1 cut(s)	135
Bso31I	GGTCTC	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	37, 103
BspCNI	CTCAG	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	57
BspMAI	CTGCAG	1 cut(s)	15
BspTNI	GGTCTC	1 cut(s)	135
BsrDI	GCAATG	2 cut(s)	90, 106
BsrI	ACTGG	2 cut(s)	131, 236
BssECI	CCNNGG	2 cut(s)	183, 214
BssMI	GATC	2 cut(s)	37, 103
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	267
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	32, 97
BstDEI	CTNAG	1 cut(s)	246
BstEII	GGTNACC	1 cut(s)	223
BstF5I	GGATG	2 cut(s)	178, 224
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	2 cut(s)	40, 106
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	2 cut(s)	37, 103
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNI	CCWGG	1 cut(s)	216
BstNSI	RCATGY	1 cut(s)	197
BstPI	GGTNACC	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	214
BstSFI	CTRYAG	1 cut(s)	11
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	3 cut(s)	25, 226, 237
BstV2I	GAAGAC	1 cut(s)	134
BtsCI	GGATG	2 cut(s)	178, 224
Cac8I	GCNNGC	2 cut(s)	32, 97
CfoI	GCGC	1 cut(s)	57
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	2 cut(s)	107, 194
CviJI	RGCY	7 cut(s)	10, 30, 70, 83, 162, 239, 250
CviKI_1	RGCY	7 cut(s)	10, 30, 70, 83, 162, 239, 250
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	2 cut(s)	39, 105
DpnII	GATC	2 cut(s)	37, 103
Eco31I	GGTCTC	1 cut(s)	135
Eco91I	GGTNACC	1 cut(s)	223
EcoO65I	GGTNACC	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	214
FaeI	CATG	2 cut(s)	110, 197
FaiI	YATR	3 cut(s)	108, 124, 195
FatI	CATG	2 cut(s)	106, 193
FbaI	TGATCA	2 cut(s)	37, 103
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	4 cut(s)	11, 14, 240, 251
FokI	GGATG	2 cut(s)	185, 231
Fsp4HI	GCNGC	4 cut(s)	11, 14, 240, 251
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	4 cut(s)	11, 14, 240, 251
HapII	CCGG	1 cut(s)	254
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	110, 197
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	167, 184
Hpy188III	TCNNGA	2 cut(s)	132, 245
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	2 cut(s)	62, 65
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4V	TGCA	4 cut(s)	13, 77, 90, 99
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	110, 197
HspAI	GCGC	1 cut(s)	55
Ksp22I	TGATCA	2 cut(s)	37, 103
Kzo9I	GATC	2 cut(s)	37, 103
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	8 cut(s)	26, 48, 112, 122, 201, 217, 228, 258
Lsp1109I	GCAGC	3 cut(s)	25, 226, 237
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	39, 105
MboI	GATC	2 cut(s)	37, 103
MboII	GAAGA	2 cut(s)	134, 137
MnlI	CCTC	3 cut(s)	60, 161, 178
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	198
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	96
NdeII	GATC	2 cut(s)	37, 103
NlaIII	CATG	2 cut(s)	110, 197
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	197
PflFI	GACNNNGTC	1 cut(s)	138
PkrI	GCNGC	4 cut(s)	12, 15, 241, 252
Psp6I	CCWGG	1 cut(s)	214
PspEI	GGTNACC	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	214
PstI	CTGCAG	1 cut(s)	15
PsyI	GACNNNGTC	1 cut(s)	138
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	1 cut(s)	198
SalI	GTCGAC	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	4 cut(s)	11, 14, 240, 251
Sau3AI	GATC	2 cut(s)	37, 103
ScrFI	CCNGG	1 cut(s)	216
SetI	ASST	7 cut(s)	12, 32, 45, 189, 230, 241, 252
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	11
SgrDI	CGTCGACG	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	198
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	1 cut(s)	267
TaqI	TCGA	2 cut(s)	60, 133
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	4 cut(s)	10, 13, 239, 250
Tsp45I	GTSAC	1 cut(s)	223
Tth111I	GACNNNGTC	1 cut(s)	138
XceI	RCATGY	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	60
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.