Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

12678165 .. 12686170

Gene Structure 8006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g21091.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCCTCTATTGATGCTACCTCAGCAAGTTTCGTTGCCTCTGGCTTCAGCTACTGGCGGGGCTGCTTTTTCTATCCGACGGGACCGCTTGGACATGAGGGCTGCAAGACAGCGCTTTTGGGGCTCCGTTCTAGTCCATTGGCGCCGCTTAGACTTGTTGATGACAAGAAATTATGGCAACCGGAGGTTCGCATAAGTAAATTTTCCTTGGAGGTGGTCCCCGCACGACTTACTCTAGGTTTCAGAGTGAAATTCGGGGTGGGTCGTGTCAAAGCTGCTCCTGAGCTGCCGGAAACAAAACCCGGCTTCGGAGGGGATGGGTACTCTAAGGTTAAGCATGATGATGCTAGAGCAATCCCAAGATGGGTGACCTACTGGGAAGCTGCTCCTGAGCTGCCGGAAACAAAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.05

Weight (kDa)

9.36

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AciI	CCGC	4 cut(s)	58, 86, 146, 222
AcsI	RAATTY	2 cut(s)	200, 251
AcuI	CTGAAG	1 cut(s)	31
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	1 cut(s)	323
AfeI	AGCGCT	1 cut(s)	114
AfiI	CCNNNNNNNGG	2 cut(s)	308, 364
AluBI	AGCT	5 cut(s)	51, 275, 286, 383, 394
AluI	AGCT	5 cut(s)	51, 275, 286, 383, 394
AlwNI	CAGNNNCTG	1 cut(s)	54
Aor51HI	AGCGCT	1 cut(s)	114
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	6 cut(s)	63, 102, 275, 286, 383, 394
ApoI	RAATTY	2 cut(s)	200, 251
ArsI	GACNNNNNNTTYG	2 cut(s)	100, 132
AspLEI	GCGC	2 cut(s)	115, 145
AspS9I	GGNCC	2 cut(s)	83, 217
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	1 cut(s)	379
AvaII	GGWCC	2 cut(s)	83, 217
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	126
BbvCI	CCTCAGC	1 cut(s)	22
BbvI	GCAGC	6 cut(s)	50, 89, 262, 273, 370, 381
BccI	CCATC	2 cut(s)	311, 357
BcnI	CCSGG	1 cut(s)	303
BfaI	CTAG	3 cut(s)	132, 236, 348
BfoI	RGCGCY	2 cut(s)	116, 146
BisI	GCNGC	7 cut(s)	64, 103, 146, 276, 287, 384, 395
BlsI	GCNGC	7 cut(s)	65, 104, 147, 277, 288, 385, 396
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	2 cut(s)	83, 217
BmgT120I	GGNCC	2 cut(s)	83, 217
BmiI	GGNNCC	4 cut(s)	84, 125, 144, 219
BmrFI	CCNGG	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	385
BmsI	GCATC	2 cut(s)	4, 334
BmuI	ACTGGG	1 cut(s)	385
Bpu10I	CCTNAGC	3 cut(s)	22, 282, 390
BpuMI	CCSGG	1 cut(s)	303
BsaHI	GRCGYC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 364
Bse1I	ACTGG	2 cut(s)	59, 380
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	2 cut(s)	308, 364
BseMII	CTCAG	3 cut(s)	36, 273, 381
BseNI	ACTGG	2 cut(s)	59, 380
BseXI	GCAGC	6 cut(s)	50, 89, 262, 273, 370, 381
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	142
BsiSI	CCGG	4 cut(s)	182, 290, 303, 398
BslFI	GGGAC	2 cut(s)	96, 203
BslI	CCNNNNNNNGG	2 cut(s)	308, 364
BsmFI	GGGAC	2 cut(s)	96, 203
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	126
BspACI	CCGC	4 cut(s)	58, 86, 146, 222
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	35, 274, 382
BspLI	GGNNCC	4 cut(s)	84, 125, 144, 219
BspT107I	GGYRCC	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	59, 380
BssECI	CCNNGG	1 cut(s)	207
BssNI	GRCGYC	1 cut(s)	143
BssT1I	CCWWGG	1 cut(s)	207
BstACI	GRCGYC	1 cut(s)	143
BstDEI	CTNAG	5 cut(s)	22, 149, 282, 327, 390
BstEII	GGTNACC	1 cut(s)	367
BstF5I	GGATG	1 cut(s)	322
BstH2I	RGCGCY	2 cut(s)	116, 146
BstHHI	GCGC	2 cut(s)	115, 145
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 121
BstPI	GGTNACC	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	301
BstV1I	GCAGC	6 cut(s)	50, 89, 262, 273, 370, 381
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	322
CaiI	CAGNNNCTG	1 cut(s)	54
CfoI	GCGC	2 cut(s)	115, 145
Cfr13I	GGNCC	2 cut(s)	83, 217
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	2 cut(s)	95, 338
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	5 cut(s)	22, 149, 282, 327, 390
DinI	GGCGCC	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	83, 217
Eco47III	AGCGCT	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	31
Eco91I	GGTNACC	1 cut(s)	367
EcoO65I	GGTNACC	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	126
EgeI	GGCGCC	1 cut(s)	144
EheI	GGCGCC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	2 cut(s)	98, 341
FaiI	YATR	4 cut(s)	96, 175, 194, 339
FaqI	GGGAC	2 cut(s)	96, 203
FatI	CATG	2 cut(s)	94, 337
FauI	CCCGC	2 cut(s)	51, 229
Fnu4HI	GCNGC	7 cut(s)	64, 103, 146, 276, 287, 384, 395
FokI	GGATG	1 cut(s)	329
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	7 cut(s)	64, 103, 146, 276, 287, 384, 395
FspBI	CTAG	3 cut(s)	132, 236, 348
GlaI	GCGC	2 cut(s)	114, 144
GluI	GCNGC	7 cut(s)	64, 103, 146, 276, 287, 384, 395
HaeII	RGCGCY	2 cut(s)	116, 146
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	4 cut(s)	182, 290, 303, 398
HhaI	GCGC	2 cut(s)	115, 145
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	98, 341
Hin6I	GCGC	2 cut(s)	113, 143
HinP1I	GCGC	2 cut(s)	113, 143
HpaII	CCGG	4 cut(s)	182, 290, 303, 398
HphI	GGTGA	1 cut(s)	379
Hpy188I	TCNGA	3 cut(s)	78, 245, 311
Hpy188III	TCNNGA	2 cut(s)	281, 389
Hpy99I	CGWCG	1 cut(s)	82
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 121
HpyF3I	CTNAG	5 cut(s)	22, 149, 282, 327, 390
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	2 cut(s)	98, 341
HspAI	GCGC	2 cut(s)	113, 143
KasI	GGCGCC	1 cut(s)	142
LmnI	GCTCC	3 cut(s)	129, 283, 391
LpnPI	CCDG	8 cut(s)	27, 40, 195, 294, 303, 316, 361, 402
Lsp1109I	GCAGC	6 cut(s)	50, 89, 262, 273, 370, 381
LweI	GCATC	2 cut(s)	4, 334
MaeI	CTAG	3 cut(s)	132, 236, 348
MaeIII	GTNAC	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	3 cut(s)	170, 200, 251
Mly113I	GGCGCC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	7 cut(s)	16, 31, 49, 91, 178, 205, 305
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	342
MspI	CCGG	4 cut(s)	182, 290, 303, 398
MspR9I	CCNGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	23, 121
NarI	GGCGCC	1 cut(s)	143
NciI	CCSGG	1 cut(s)	303
NlaIII	CATG	2 cut(s)	98, 341
NlaIV	GGNNCC	4 cut(s)	84, 125, 144, 219
NmuCI	GTSAC	1 cut(s)	367
PkrI	GCNGC	7 cut(s)	65, 104, 147, 277, 288, 385, 396
PluTI	GGCGCC	1 cut(s)	146
PspEI	GGTNACC	1 cut(s)	367
PspN4I	GGNNCC	4 cut(s)	84, 125, 144, 219
PspPI	GGNCC	2 cut(s)	83, 217
PstNI	CAGNNNCTG	1 cut(s)	54
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	7 cut(s)	64, 103, 146, 276, 287, 384, 395
Sau96I	GGNCC	2 cut(s)	83, 217
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	1 cut(s)	126
SfaNI	GCATC	2 cut(s)	4, 334
SfoI	GGCGCC	1 cut(s)	144
SinI	GGWCC	2 cut(s)	83, 217
SmiMI	CAYNNNNRTG	1 cut(s)	342
Sse9I	AATT	3 cut(s)	170, 200, 251
SsiI	CCGC	4 cut(s)	58, 86, 146, 222
SspDI	GGCGCC	1 cut(s)	142
SspMI	CTAG	3 cut(s)	132, 236, 348
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	1 cut(s)	207
TasI	AATT	3 cut(s)	170, 200, 251
TauI	GCSGC	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	6 cut(s)	63, 102, 275, 286, 383, 394
Tsp45I	GTSAC	1 cut(s)	367
TspGWI	ACGGA	1 cut(s)	116
VpaK11BI	GGWCC	2 cut(s)	83, 217
XapI	RAATTY	2 cut(s)	200, 251
XspI	CTAG	3 cut(s)	132, 236, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.