Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

13209987 .. 13211646

Gene Structure 1660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG088300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTATATTAATCAACAACAAGAAGATGGTATTTTTGGTCCTTTCATTGTGGCTGCCAATTCTAAAAGCTTTGCCGGATCTTCTTCATCAGTCGTGTGCAAGATGTATTCACTGGAAGAAACATCCCCCGTTGTGAACTCGGATCACAAGAAGCCTAGACTCGATATTGCAGGTAGCCTTATGGTCCCTGCATTGGATGAAAAGCAGAAGCATATCTCTGATGAATATGAGAAGGAAGACGACTCAAAGCCAAGACATGCACACACATGTTCCGCTGCTGAAGAAGGATTTTGCATCCATATCGCCGATGTCCATATCTCCTTAGATTACCTTTTTGAAGAAATCAATTTGCTAGAAGAGTCTATTGGCTTAAGCAAGTCGGTCTACTCATTAAGGAACAATGATATTGATGAAAAGGTAAACACATTCAGAAAACATGTAGGTCTACTGGGCCAAGGATTCATGTTTAGAAAACATGTAGGTCTATTTGTACAAGGCATTTGTAGGTCTACTTGTGAGCTTAATGGTAAATTGGAAAATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.27

Weight (kDa)

5.6

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	161
AccI	GTMKAC	3 cut(s)	384, 445, 509
AciI	CCGC	1 cut(s)	273
AclWI	GGATC	2 cut(s)	85, 150
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	1 cut(s)	492
AfiI	CCNNNNNNNGG	1 cut(s)	193
AflII	CTTAAG	1 cut(s)	370
AflIII	ACRYGT	3 cut(s)	266, 436, 475
AgsI	TTSAA	1 cut(s)	338
AjuI	GAANNNNNNNTTGG	2 cut(s)	348, 380
AluBI	AGCT	2 cut(s)	69, 520
AluI	AGCT	2 cut(s)	69, 520
AlwI	GGATC	2 cut(s)	85, 150
AoxI	GGCC	1 cut(s)	451
ApeKI	GCWGC	2 cut(s)	53, 275
AseI	ATTAAT	1 cut(s)	9
AspS9I	GGNCC	3 cut(s)	38, 184, 451
AvaII	GGWCC	2 cut(s)	38, 184
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	2 cut(s)	40, 262
BccI	CCATC	1 cut(s)	20
BcgI	CGANNNNNNTGC	2 cut(s)	283, 317
BfaI	CTAG	2 cut(s)	156, 353
BfrI	CTTAAG	1 cut(s)	370
BfuAI	ACCTGC	1 cut(s)	161
BisI	GCNGC	2 cut(s)	54, 276
BlsI	GCNGC	2 cut(s)	55, 277
Bme18I	GGWCC	2 cut(s)	38, 184
BmgT120I	GGNCC	3 cut(s)	38, 184, 451
BmiI	GGNNCC	1 cut(s)	186
BmrI	ACTGGG	1 cut(s)	458
BmsI	GCATC	1 cut(s)	303
BmuI	ACTGGG	1 cut(s)	458
BpiI	GAAGAC	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	454
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse1I	ACTGG	2 cut(s)	117, 453
BseDI	CCNNGG	1 cut(s)	454
BseGI	GGATG	3 cut(s)	122, 202, 294
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseNI	ACTGG	2 cut(s)	117, 453
BseXI	GCAGC	2 cut(s)	40, 262
BshFI	GGCC	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	453
Bsp1407I	TGTACA	1 cut(s)	490
Bsp143I	GATC	2 cut(s)	77, 142
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	1 cut(s)	453
BspLI	GGNNCC	1 cut(s)	186
BspMI	ACCTGC	1 cut(s)	161
BspPI	GGATC	2 cut(s)	85, 150
BspTI	CTTAAG	1 cut(s)	370
BsrGI	TGTACA	1 cut(s)	490
BsrI	ACTGG	2 cut(s)	117, 453
BssECI	CCNNGG	1 cut(s)	454
BssMI	GATC	2 cut(s)	77, 142
BssT1I	CCWWGG	1 cut(s)	454
Bst6I	CTCTTC	1 cut(s)	351
BstAFI	CTTAAG	1 cut(s)	370
BstAUI	TGTACA	1 cut(s)	490
BstDEI	CTNAG	1 cut(s)	322
BstF5I	GGATG	3 cut(s)	122, 202, 294
BstKTI	GATC	2 cut(s)	80, 145
BstMBI	GATC	2 cut(s)	77, 142
BstNSI	RCATGY	4 cut(s)	260, 270, 440, 479
BstV1I	GCAGC	2 cut(s)	40, 262
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	453
BtsCI	GGATG	3 cut(s)	122, 202, 294
BtsIMutI	CAGTG	1 cut(s)	110
BveI	ACCTGC	1 cut(s)	161
Cfr13I	GGNCC	3 cut(s)	38, 184, 451
Csp6I	GTAC	1 cut(s)	491
CviAII	CATG	5 cut(s)	257, 267, 437, 463, 476
CviJI	RGCY	8 cut(s)	53, 69, 154, 177, 250, 369, 453, 520
CviKI_1	RGCY	8 cut(s)	53, 69, 154, 177, 250, 369, 453, 520
CviQI	GTAC	1 cut(s)	491
DdeI	CTNAG	1 cut(s)	322
DpnI	GATC	2 cut(s)	79, 144
DpnII	GATC	2 cut(s)	77, 142
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	454
Eco47I	GGWCC	2 cut(s)	38, 184
Eco57I	CTGAAG	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	454
FaeI	CATG	5 cut(s)	260, 270, 440, 466, 479
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	5 cut(s)	256, 266, 436, 462, 475
FblI	GTMKAC	3 cut(s)	384, 445, 509
Fnu4HI	GCNGC	2 cut(s)	54, 276
FokI	GGATG	3 cut(s)	109, 209, 281
Fsp4HI	GCNGC	2 cut(s)	54, 276
FspBI	CTAG	2 cut(s)	156, 353
GluI	GCNGC	2 cut(s)	54, 276
HaeIII	GGCC	1 cut(s)	453
HapII	CCGG	1 cut(s)	75
Hin1II	CATG	5 cut(s)	260, 270, 440, 466, 479
HindIII	AAGCTT	1 cut(s)	67
HinfI	GANTC	4 cut(s)	159, 242, 359, 459
HpaII	CCGG	1 cut(s)	75
Hpy166II	GTNNAC	5 cut(s)	136, 385, 421, 446, 510
Hpy188I	TCNGA	3 cut(s)	142, 220, 431
Hpy8I	GTNNAC	5 cut(s)	136, 385, 421, 446, 510
HpyAV	CCTTC	2 cut(s)	226, 278
HpyCH4V	TGCA	5 cut(s)	99, 170, 191, 260, 294
HpyF3I	CTNAG	1 cut(s)	322
Hsp92II	CATG	5 cut(s)	260, 270, 440, 466, 479
Kzo9I	GATC	2 cut(s)	77, 142
LpnPI	CCDG	5 cut(s)	88, 98, 156, 201, 434
Lsp1109I	GCAGC	2 cut(s)	40, 262
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	2 cut(s)	156, 353
MalI	GATC	2 cut(s)	79, 144
MboI	GATC	2 cut(s)	77, 142
MboII	GAAGA	8 cut(s)	35, 72, 75, 128, 248, 293, 350, 368
MflI	RGATCY	1 cut(s)	77
MluCI	AATT	3 cut(s)	58, 346, 530
MlyI	GAGTC	3 cut(s)	153, 236, 368
MseI	TTAA	4 cut(s)	9, 371, 392, 522
MslI	CAYNNNNRTG	1 cut(s)	265
MspA1I	CMGCKG	1 cut(s)	275
MspCI	CTTAAG	1 cut(s)	370
MspI	CCGG	1 cut(s)	75
NdeII	GATC	2 cut(s)	77, 142
NlaIII	CATG	5 cut(s)	260, 270, 440, 466, 479
NlaIV	GGNNCC	1 cut(s)	186
NspI	RCATGY	4 cut(s)	260, 270, 440, 479
PciI	ACATGT	3 cut(s)	266, 436, 475
PfeI	GAWTC	1 cut(s)	459
PkrI	GCNGC	2 cut(s)	55, 277
PleI	GAGTC	3 cut(s)	153, 236, 367
PpsI	GAGTC	3 cut(s)	153, 236, 367
PscI	ACATGT	3 cut(s)	266, 436, 475
PshBI	ATTAAT	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	3 cut(s)	38, 184, 451
PsuI	RGATCY	1 cut(s)	77
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
RseI	CAYNNNNRTG	1 cut(s)	265
SaqAI	TTAA	4 cut(s)	9, 371, 392, 522
SatI	GCNGC	2 cut(s)	54, 276
Sau3AI	GATC	2 cut(s)	77, 142
Sau96I	GGNCC	3 cut(s)	38, 184, 451
SchI	GAGTC	3 cut(s)	153, 236, 368
SetI	ASST	8 cut(s)	71, 175, 333, 420, 445, 484, 509, 522
SfaNI	GCATC	1 cut(s)	303
SinI	GGWCC	2 cut(s)	38, 184
SmiMI	CAYNNNNRTG	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
Sse9I	AATT	3 cut(s)	58, 346, 530
SsiI	CCGC	1 cut(s)	273
SspMI	CTAG	2 cut(s)	156, 353
StyI	CCWWGG	1 cut(s)	454
TaqI	TCGA	1 cut(s)	162
TaqII	GACCGA	1 cut(s)	370
TasI	AATT	3 cut(s)	58, 346, 530
TatI	WGTACW	1 cut(s)	490
TfiI	GAWTC	1 cut(s)	459
Tru1I	TTAA	4 cut(s)	9, 371, 392, 522
Tru9I	TTAA	4 cut(s)	9, 371, 392, 522
TscAI	CASTG	1 cut(s)	117
TseI	GCWGC	2 cut(s)	53, 275
TspDTI	ATGAA	6 cut(s)	34, 75, 213, 237, 426, 451
TspRI	CASTG	1 cut(s)	117
Vha464I	CTTAAG	1 cut(s)	370
VpaK11BI	GGWCC	2 cut(s)	38, 184
VspI	ATTAAT	1 cut(s)	9
XceI	RCATGY	4 cut(s)	260, 270, 440, 479
XmiI	GTMKAC	3 cut(s)	384, 445, 509
XspI	CTAG	2 cut(s)	156, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.