Rh7DG408700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000607
Physical Location & Seq
Reverse (-)
57351453 .. 57357603
6151 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG408700.1

Sequence Viewer

Length: 540 bp
ATGGCTCCGACCACTCAAATTCCAGATGTCTTCATCGCTCTATCTTCTCCTGTTTTTTCTTGCGACCTCTCCCACACAAAGATCTACCAAGGTATTATTGGTCCTTTCACTGTGGTGTGCAAGATGTCTTCACTGGAAGAAACACCTCCCATTGTGAACTGGGATCAGAAGATGCCTAGTCTCGATATTGCATGTAGCCTTATGGTCCCCGCATTGGATGAAAAGCATAAGCATATCTCTGATGAATATGAGAAGGAAGACGACTCAAAGCCAATACATGTGCACACATGTTTTGCTGTTGAAGAAGGATTTTGCATCCATATCACCGATGTCACTAAAAGACCATGCAGCACATGCTCACACCTGTACAACGTAGGTCCAGACAACAAAAAGAGATGCAGTTGTATCTTATGCCACTGGGAAGAGGAACAAGATGGGAATGCCAATTCACCTCCCTTAGGTTATTGGTGGTGGCCTAGTGACTCTGAATTCTCTCCAGATATTGATGATTTTCACCAAGAAAGTGTTCTGTGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.35

Weight (kDa)

4.7

Isoelectric Point (pI)

71.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 210
AclWI GGATC 1 cut(s) 171
AcsI RAATTY 2 cut(s) 18, 488
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 2 cut(s) 214, 458
AflIII ACRYGT 2 cut(s) 277, 287
AgsI TTSAA 1 cut(s) 302
AjuI GAANNNNNNNTTGG 1 cut(s) 510
AleI CACNNNNGTG 1 cut(s) 113
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 1 cut(s) 185
Alw44I GTGCAC 1 cut(s) 281
AlwI GGATC 1 cut(s) 171
AoxI GGCC 1 cut(s) 473
ApaLI GTGCAC 1 cut(s) 281
ApeKI GCWGC 1 cut(s) 348
ApoI RAATTY 2 cut(s) 18, 488
Asp700I GAANNNNTTC 1 cut(s) 525
AspS9I GGNCC 3 cut(s) 101, 205, 377
AsuHPI GGTGA 3 cut(s) 316, 441, 506
AvaII GGWCC 3 cut(s) 101, 205, 377
AxyI CCTNAGG 1 cut(s) 457
BaeGI GKGCMC 1 cut(s) 285
BbsI GAAGAC 3 cut(s) 22, 120, 264
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 360
BccI CCATC 1 cut(s) 428
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 2 cut(s) 177, 477
BglII AGATCT 1 cut(s) 81
BisI GCNGC 1 cut(s) 349
BlsI GCNGC 1 cut(s) 350
Bme18I GGWCC 3 cut(s) 101, 205, 377
BmgT120I GGNCC 3 cut(s) 101, 205, 377
BmiI GGNNCC 2 cut(s) 6, 207
BmrI ACTGGG 2 cut(s) 169, 427
BmsI GCATC 3 cut(s) 162, 324, 386
BmuI ACTGGG 2 cut(s) 169, 427
BpiI GAAGAC 3 cut(s) 22, 120, 264
BpmI CTGGAG 1 cut(s) 480
BsaJI CCNNGG 1 cut(s) 88
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 458
Bse1I ACTGG 3 cut(s) 138, 164, 422
Bse21I CCTNAGG 1 cut(s) 457
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 3 cut(s) 223, 315, 540
BseLI CCNNNNNNNGG 2 cut(s) 214, 458
BseNI ACTGG 3 cut(s) 138, 164, 422
BseSI GKGCMC 1 cut(s) 285
BseXI GCAGC 1 cut(s) 360
BshFI GGCC 1 cut(s) 475
BsiHKAI GWGCWC 1 cut(s) 285
BslFI GGGAC 1 cut(s) 191
BslI CCNNNNNNNGG 2 cut(s) 214, 458
BsmAI GTCTC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 1 cut(s) 475
Bsp1286I GDGCHC 1 cut(s) 285
Bsp1407I TGTACA 1 cut(s) 366
Bsp143I GATC 2 cut(s) 81, 163
BspACI CCGC 1 cut(s) 210
BspANI GGCC 1 cut(s) 475
BspLI GGNNCC 2 cut(s) 6, 207
BspPI GGATC 1 cut(s) 171
BsrGI TGTACA 1 cut(s) 366
BsrI ACTGG 3 cut(s) 138, 164, 422
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 2 cut(s) 81, 163
BssT1I CCWWGG 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 417
BstAPI GCANNNNNTGC 1 cut(s) 354
BstAUI TGTACA 1 cut(s) 366
BstDEI CTNAG 1 cut(s) 457
BstENI CCTNNNNNAGG 1 cut(s) 456
BstF5I GGATG 3 cut(s) 223, 315, 540
BstKTI GATC 2 cut(s) 84, 166
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 2 cut(s) 81, 163
BstMWI GCNNNNNNNGC 1 cut(s) 354
BstNSI RCATGY 4 cut(s) 195, 281, 291, 357
BstSLI GKGCMC 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 360
BstV2I GAAGAC 3 cut(s) 22, 120, 264
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
Bsu36I CCTNAGG 1 cut(s) 457
BsuRI GGCC 1 cut(s) 475
BtgZI GCGATG 1 cut(s) 19
BtsCI GGATG 3 cut(s) 223, 315, 540
BtsIMutI CAGTG 3 cut(s) 108, 131, 415
Cfr13I GGNCC 3 cut(s) 101, 205, 377
Csp6I GTAC 1 cut(s) 367
CviAII CATG 5 cut(s) 192, 278, 288, 345, 354
CviJI RGCY 4 cut(s) 5, 198, 271, 475
CviKI_1 RGCY 4 cut(s) 5, 198, 271, 475
CviQI GTAC 1 cut(s) 367
DdeI CTNAG 1 cut(s) 457
DpnI GATC 2 cut(s) 83, 165
DpnII GATC 2 cut(s) 81, 163
Eam1104I CTCTTC 1 cut(s) 417
EarI CTCTTC 1 cut(s) 417
Eco130I CCWWGG 1 cut(s) 88
Eco47I GGWCC 3 cut(s) 101, 205, 377
Eco81I CCTNAGG 1 cut(s) 457
EcoNI CCTNNNNNAGG 1 cut(s) 456
EcoRI GAATTC 1 cut(s) 488
EcoT14I CCWWGG 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 5 cut(s) 195, 281, 291, 348, 357
FaqI GGGAC 1 cut(s) 191
FatI CATG 5 cut(s) 191, 277, 287, 344, 353
FauI CCCGC 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 349
FokI GGATG 2 cut(s) 230, 302
Fsp4HI GCNGC 1 cut(s) 349
FspBI CTAG 2 cut(s) 177, 477
GluI GCNGC 1 cut(s) 349
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 1 cut(s) 475
Hin1II CATG 5 cut(s) 195, 281, 291, 348, 357
HinfI GANTC 2 cut(s) 263, 482
HphI GGTGA 3 cut(s) 316, 441, 506
Hpy166II GTNNAC 2 cut(s) 157, 283
Hpy188I TCNGA 4 cut(s) 9, 168, 241, 487
Hpy188III TCNNGA 4 cut(s) 23, 182, 380, 497
Hpy8I GTNNAC 2 cut(s) 157, 283
HpyAV CCTTC 2 cut(s) 247, 299
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 6 cut(s) 120, 191, 283, 315, 348, 399
HpyF10VI GCNNNNNNNGC 1 cut(s) 354
HpyF3I CTNAG 1 cut(s) 457
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 5 cut(s) 195, 281, 291, 348, 357
Kzo9I GATC 2 cut(s) 81, 163
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 8 cut(s) 36, 63, 119, 145, 377, 393, 403, 510
Lsp1109I GCAGC 1 cut(s) 360
LweI GCATC 3 cut(s) 162, 324, 386
MaeI CTAG 2 cut(s) 177, 477
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 2 cut(s) 331, 479
MalI GATC 2 cut(s) 83, 165
MboI GATC 2 cut(s) 81, 163
MboII GAAGA 8 cut(s) 22, 36, 120, 149, 181, 269, 314, 434
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 3 cut(s) 18, 445, 488
MlyI GAGTC 2 cut(s) 257, 476
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 4 cut(s) 77, 156, 418, 462
MroXI GAANNNNTTC 1 cut(s) 525
MslI CAYNNNNRTG 1 cut(s) 113
Mva1269I GAATGC 1 cut(s) 445
MwoI GCNNNNNNNGC 1 cut(s) 354
NdeII GATC 2 cut(s) 81, 163
NlaIII CATG 5 cut(s) 195, 281, 291, 348, 357
NlaIV GGNNCC 2 cut(s) 6, 207
NmuCI GTSAC 2 cut(s) 331, 479
NspI RCATGY 4 cut(s) 195, 281, 291, 357
OliI CACNNNNGTG 1 cut(s) 113
PciI ACATGT 2 cut(s) 277, 287
PctI GAATGC 1 cut(s) 445
PdmI GAANNNNTTC 1 cut(s) 525
PkrI GCNGC 1 cut(s) 350
PleI GAGTC 2 cut(s) 257, 476
PpsI GAGTC 2 cut(s) 257, 476
PscI ACATGT 2 cut(s) 277, 287
PspN4I GGNNCC 2 cut(s) 6, 207
PspPI GGNCC 3 cut(s) 101, 205, 377
PsuI RGATCY 1 cut(s) 81
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 1 cut(s) 113
SatI GCNGC 1 cut(s) 349
Sau3AI GATC 2 cut(s) 81, 163
Sau96I GGNCC 3 cut(s) 101, 205, 377
SchI GAGTC 2 cut(s) 257, 476
SduI GDGCHC 1 cut(s) 285
SetI ASST 8 cut(s) 69, 94, 148, 366, 375, 379, 454, 463
SfaNI GCATC 3 cut(s) 162, 324, 386
SinI GGWCC 3 cut(s) 101, 205, 377
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 3 cut(s) 18, 445, 488
SsiI CCGC 1 cut(s) 210
SspMI CTAG 2 cut(s) 177, 477
StyI CCWWGG 1 cut(s) 88
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 1 cut(s) 375
TaqI TCGA 1 cut(s) 183
TasI AATT 3 cut(s) 18, 445, 488
TatI WGTACW 1 cut(s) 366
TscAI CASTG 3 cut(s) 115, 138, 422
TseFI GTSAC 2 cut(s) 331, 479
TseI GCWGC 1 cut(s) 348
Tsp45I GTSAC 2 cut(s) 331, 479
TspDTI ATGAA 3 cut(s) 22, 234, 258
TspRI CASTG 3 cut(s) 115, 138, 422
VneI GTGCAC 1 cut(s) 281
VpaK11BI GGWCC 3 cut(s) 101, 205, 377
XagI CCTNNNNNAGG 1 cut(s) 456
XapI RAATTY 2 cut(s) 18, 488
XceI RCATGY 4 cut(s) 195, 281, 291, 357
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 2 cut(s) 177, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.