Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Reverse (-)

49748455 .. 49750716

Gene Structure 2262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG367800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCAAAGCTGAAAATTAAGTATATTAATCAACAACAAGAAGATGGTATTATTGGTCCTTTCACTGTGGTGTGCAAGATGTCTTCACTGGAAGAAACACCCCCCATTGTGAACTGGGATCAGAAGAAGCCTAGTCTCGATATTGCAGGTAGCCTTATGGTTCCCGCATTGGATGAAAAGCATAAGCATATCTCTGATGAATATGAGAAGGAAGACGACTCAAAGCCAATACATGCGCACACATGTTCTGCTGTTGAAGAAGGATTTTGCATCCATATCACCGATGTCACTAAAAGACCATGCAGCACATGCTCACTCCTGTACAACGTAGGTCCAGACAACAAAAAGAGATGCAGTTGTATCTTATGCCACTGGGAAGAGGAACAAGATGGGAATGCCAATTCACCTCCCTCAGACCTTTTCGAAGAAATCGGTTTGCCAGAAGAGTCTACTGGCTTGAGAAAGGAGGTCTACTCATTGGGGAACAATGATATTGCTGGAAAGGTAAACATGTTCAGAAACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.63

Weight (kDa)

5.04

Isoelectric Point (pI)

60.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	237
Acc36I	ACCTGC	1 cut(s)	137
AccI	GTMKAC	2 cut(s)	449, 471
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	323
AflIII	ACRYGT	3 cut(s)	242, 510, 522
AgsI	TTSAA	1 cut(s)	257
AleI	CACNNNNGTG	1 cut(s)	68
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	303
AseI	ATTAAT	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	2 cut(s)	56, 332
AsuHPI	GGTGA	2 cut(s)	271, 396
AsuII	TTCGAA	1 cut(s)	423
AvaII	GGWCC	2 cut(s)	56, 332
BbsI	GAAGAC	2 cut(s)	75, 219
BbvI	GCAGC	1 cut(s)	315
BccI	CCATC	2 cut(s)	38, 383
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	132
BfuAI	ACCTGC	1 cut(s)	137
BisI	GCNGC	1 cut(s)	304
BlsI	GCNGC	1 cut(s)	305
Bme18I	GGWCC	2 cut(s)	56, 332
BmgT120I	GGNCC	2 cut(s)	56, 332
BmiI	GGNNCC	1 cut(s)	162
BmrI	ACTGGG	2 cut(s)	124, 382
BmsI	GCATC	2 cut(s)	279, 341
BmuI	ACTGGG	2 cut(s)	124, 382
BpiI	GAAGAC	2 cut(s)	75, 219
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
Bpu14I	TTCGAA	1 cut(s)	423
BpuEI	CTTGAG	1 cut(s)	478
Bse1I	ACTGG	4 cut(s)	93, 119, 377, 457
BseGI	GGATG	2 cut(s)	178, 270
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	4 cut(s)	93, 119, 377, 457
BseXI	GCAGC	1 cut(s)	315
BsmAI	GTCTC	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	400
Bsp119I	TTCGAA	1 cut(s)	423
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	1 cut(s)	165
BspCNI	CTCAG	1 cut(s)	425
BspLI	GGNNCC	1 cut(s)	162
BspMI	ACCTGC	1 cut(s)	137
BspPI	GGATC	1 cut(s)	126
BspT104I	TTCGAA	1 cut(s)	423
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	4 cut(s)	93, 119, 377, 457
BssMI	GATC	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	2 cut(s)	372, 438
BstAPI	GCANNNNNTGC	1 cut(s)	309
BstAUI	TGTACA	1 cut(s)	321
BstBI	TTCGAA	1 cut(s)	423
BstDEI	CTNAG	1 cut(s)	412
BstF5I	GGATG	2 cut(s)	178, 270
BstHHI	GCGC	1 cut(s)	238
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	1 cut(s)	309
BstNSI	RCATGY	5 cut(s)	236, 246, 312, 514, 526
BstV1I	GCAGC	1 cut(s)	315
BstV2I	GAAGAC	2 cut(s)	75, 219
BtsCI	GGATG	2 cut(s)	178, 270
BtsIMutI	CAGTG	3 cut(s)	63, 86, 370
BveI	ACCTGC	1 cut(s)	137
CfoI	GCGC	1 cut(s)	238
Cfr13I	GGNCC	2 cut(s)	56, 332
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	6 cut(s)	233, 243, 300, 309, 511, 523
CviJI	RGCY	5 cut(s)	10, 130, 153, 226, 456
CviKI_1	RGCY	5 cut(s)	10, 130, 153, 226, 456
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	412
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
Eam1104I	CTCTTC	2 cut(s)	372, 438
EarI	CTCTTC	2 cut(s)	372, 438
Eco47I	GGWCC	2 cut(s)	56, 332
FaeI	CATG	6 cut(s)	236, 246, 303, 312, 514, 526
FatI	CATG	6 cut(s)	232, 242, 299, 308, 510, 522
FauI	CCCGC	1 cut(s)	172
FblI	GTMKAC	2 cut(s)	449, 471
Fnu4HI	GCNGC	1 cut(s)	304
FokI	GGATG	2 cut(s)	185, 257
Fsp4HI	GCNGC	1 cut(s)	304
FspAI	RTGCGCAY	1 cut(s)	237
FspBI	CTAG	1 cut(s)	132
FspI	TGCGCA	1 cut(s)	237
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	1 cut(s)	304
HhaI	GCGC	1 cut(s)	238
Hin1II	CATG	6 cut(s)	236, 246, 303, 312, 514, 526
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HinfI	GANTC	2 cut(s)	218, 446
HphI	GGTGA	2 cut(s)	271, 396
Hpy166II	GTNNAC	4 cut(s)	112, 450, 472, 508
Hpy188I	TCNGA	4 cut(s)	123, 196, 415, 518
Hpy188III	TCNNGA	2 cut(s)	137, 335
Hpy8I	GTNNAC	4 cut(s)	112, 450, 472, 508
HpyAV	CCTTC	2 cut(s)	202, 254
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	5 cut(s)	75, 146, 270, 303, 354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	309
HpyF3I	CTNAG	1 cut(s)	412
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	6 cut(s)	236, 246, 303, 312, 514, 526
HspAI	GCGC	1 cut(s)	236
Kzo9I	GATC	1 cut(s)	118
LpnPI	CCDG	9 cut(s)	74, 100, 132, 332, 348, 358, 438, 453, 483
Lsp1109I	GCAGC	1 cut(s)	315
LweI	GCATC	2 cut(s)	279, 341
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	1 cut(s)	327
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	9 cut(s)	53, 75, 104, 136, 224, 269, 389, 437, 455
MluCI	AATT	2 cut(s)	15, 400
MlyI	GAGTC	2 cut(s)	212, 455
MnlI	CCTC	4 cut(s)	373, 417, 421, 460
MseI	TTAA	2 cut(s)	18, 27
MslI	CAYNNNNRTG	1 cut(s)	68
Mva1269I	GAATGC	1 cut(s)	400
MwoI	GCNNNNNNNGC	1 cut(s)	309
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	6 cut(s)	236, 246, 303, 312, 514, 526
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	286
NsbI	TGCGCA	1 cut(s)	237
NspI	RCATGY	5 cut(s)	236, 246, 312, 514, 526
NspV	TTCGAA	1 cut(s)	423
OliI	CACNNNNGTG	1 cut(s)	68
PciI	ACATGT	3 cut(s)	242, 510, 522
PctI	GAATGC	1 cut(s)	400
PkrI	GCNGC	1 cut(s)	305
PleI	GAGTC	2 cut(s)	212, 454
PpsI	GAGTC	2 cut(s)	212, 454
PscI	ACATGT	3 cut(s)	242, 510, 522
PshBI	ATTAAT	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	2 cut(s)	56, 332
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	18, 27
SatI	GCNGC	1 cut(s)	304
Sau3AI	GATC	1 cut(s)	118
Sau96I	GGNCC	2 cut(s)	56, 332
SchI	GAGTC	2 cut(s)	212, 455
SetI	ASST	8 cut(s)	12, 151, 330, 334, 409, 420, 471, 507
SfaNI	GCATC	2 cut(s)	279, 341
SfuI	TTCGAA	1 cut(s)	423
SinI	GGWCC	2 cut(s)	56, 332
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	457
SmoI	CTYRAG	1 cut(s)	457
Sse9I	AATT	2 cut(s)	15, 400
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	132
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	1 cut(s)	330
TaqI	TCGA	2 cut(s)	138, 423
TasI	AATT	2 cut(s)	15, 400
TatI	WGTACW	1 cut(s)	321
Tru1I	TTAA	2 cut(s)	18, 27
Tru9I	TTAA	2 cut(s)	18, 27
TscAI	CASTG	3 cut(s)	70, 93, 377
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	1 cut(s)	303
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	2 cut(s)	189, 213
TspRI	CASTG	3 cut(s)	70, 93, 377
VpaK11BI	GGWCC	2 cut(s)	56, 332
VspI	ATTAAT	1 cut(s)	27
XceI	RCATGY	5 cut(s)	236, 246, 312, 514, 526
XmiI	GTMKAC	2 cut(s)	449, 471
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.