Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Forward (+)

7439332 .. 7439830

Gene Structure 499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08491.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTTGTCGCTGACTCACCTCTGCCTCTTTAGTCTACGCTGCCGCCGCCCGCCGACTCGCCACTCTAAGACACATCGACGCCTCACCAGTCGCCATCGTCTGCCTCTGACCACAAACCAAGGCACCAAGTCGCCCACTGCCTCTAGAGGGGTAGTTGAAGGTGCGGATCCAGCCGACAATGCGACCGAGCTTCTCGGAGCGGGAGAAAAGGGCGAAGGGGATGTTGAGGGGGAGGTTGGAGGTGGTCGTTGTGGTGATGGCGCAGTCCGGTGGGCCCCAACCGTCGAGGTTGAAGCCTTGAAGGGGACGCCGCTGACTTCGAAGGAAGGAGAGGGAGGTGAGGGAGGAGAGGGAGGAGAATCAGACTTGGAGATGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

13.16

Weight (kDa)

5.81

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccBSI	CCGCTC	1 cut(s)	200
AccI	GTMKAC	1 cut(s)	34
AciI	CCGC	6 cut(s)	43, 46, 50, 164, 200, 311
AclWI	GGATC	2 cut(s)	161, 174
AcyI	GRCGYC	2 cut(s)	79, 308
AfiI	CCNNNNNNNGG	2 cut(s)	147, 303
AgsI	TTSAA	3 cut(s)	158, 293, 301
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
AlwI	GGATC	2 cut(s)	161, 174
AoxI	GGCC	1 cut(s)	273
ApaI	GGGCCC	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	273, 274
AsuHPI	GGTGA	4 cut(s)	8, 76, 266, 350
AsuII	TTCGAA	1 cut(s)	320
BaeGI	GKGCMC	1 cut(s)	277
BamHI	GGATCC	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	3 cut(s)	102, 251, 367
BfaI	CTAG	1 cut(s)	144
BisI	GCNGC	4 cut(s)	40, 43, 46, 311
BlsI	GCNGC	4 cut(s)	41, 44, 47, 312
BmgT120I	GGNCC	2 cut(s)	273, 274
BmiI	GGNNCC	4 cut(s)	124, 168, 275, 276
Bpu14I	TTCGAA	1 cut(s)	320
BsaHI	GRCGYC	2 cut(s)	79, 308
BsaJI	CCNNGG	1 cut(s)	118
BsaWI	WCCGGW	1 cut(s)	267
BsaXI	ACNNNNNCTCC	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 303
Bse1I	ACTGG	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	2 cut(s)	147, 303
BseNI	ACTGG	1 cut(s)	87
BseRI	GAGGAG	2 cut(s)	360, 369
BseSI	GKGCMC	1 cut(s)	277
BseXI	GCAGC	1 cut(s)	26
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	275
BshNI	GGYRCC	1 cut(s)	122
BsiEI	CGRYCG	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	268
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	2 cut(s)	147, 303
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	1 cut(s)	275
Bsp119I	TTCGAA	1 cut(s)	320
Bsp120I	GGGCCC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	6 cut(s)	43, 46, 50, 164, 200, 311
BspANI	GGCC	1 cut(s)	275
BspLI	GGNNCC	4 cut(s)	124, 168, 275, 276
BspPI	GGATC	2 cut(s)	161, 174
BspT104I	TTCGAA	1 cut(s)	320
BspT107I	GGYRCC	1 cut(s)	122
BsrBI	CCGCTC	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	87
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	1 cut(s)	166
BssNI	GRCGYC	2 cut(s)	79, 308
BssT1I	CCWWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	283
BstACI	GRCGYC	2 cut(s)	79, 308
BstBI	TTCGAA	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 170, 179
BstSLI	GKGCMC	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	1 cut(s)	135
Cac8I	GCNNGC	1 cut(s)	50
CfoI	GCGC	1 cut(s)	263
Cfr13I	GGNCC	2 cut(s)	273, 274
CseI	GACGC	2 cut(s)	87, 316
CviJI	RGCY	4 cut(s)	173, 190, 275, 296
CviKI_1	RGCY	4 cut(s)	173, 190, 275, 296
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	118
EcoT38I	GRGCYC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	118
FaqI	GGGAC	1 cut(s)	319
FauI	CCCGC	2 cut(s)	57, 193
FblI	GTMKAC	1 cut(s)	34
Fnu4HI	GCNGC	4 cut(s)	40, 43, 46, 311
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	4 cut(s)	40, 43, 46, 311
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	4 cut(s)	40, 43, 46, 311
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	1 cut(s)	268
HgaI	GACGC	2 cut(s)	87, 316
HhaI	GCGC	1 cut(s)	263
Hin1I	GRCGYC	2 cut(s)	79, 308
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HinfI	GANTC	3 cut(s)	13, 55, 359
HpaII	CCGG	1 cut(s)	268
HphI	GGTGA	4 cut(s)	8, 76, 266, 350
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	3 cut(s)	108, 197, 364
Hpy188III	TCNNGA	1 cut(s)	144
Hpy8I	GTNNAC	1 cut(s)	35
Hpy99I	CGWCG	2 cut(s)	81, 287
HpyAV	CCTTC	5 cut(s)	152, 209, 295, 316, 320
HpyCH4III	ACNGT	1 cut(s)	283
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 170, 179
HpyF3I	CTNAG	1 cut(s)	66
Hsp92I	GRCGYC	2 cut(s)	79, 308
HspAI	GCGC	1 cut(s)	261
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	197
LpnPI	CCDG	3 cut(s)	100, 183, 281
Lsp1109I	GCAGC	1 cut(s)	26
MaeI	CTAG	1 cut(s)	144
MalI	GATC	1 cut(s)	168
MbiI	CCGCTC	1 cut(s)	200
MboI	GATC	1 cut(s)	166
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	277
MlyI	GAGTC	2 cut(s)	7, 49
MmeI	TCCRAC	1 cut(s)	217
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	3 cut(s)	45, 170, 179
NdeII	GATC	1 cut(s)	166
NlaIV	GGNNCC	4 cut(s)	124, 168, 275, 276
NspV	TTCGAA	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	359
PkrI	GCNGC	4 cut(s)	41, 44, 47, 312
PleI	GAGTC	2 cut(s)	7, 49
PpsI	GAGTC	2 cut(s)	7, 49
PspN4I	GGNNCC	4 cut(s)	124, 168, 275, 276
PspOMI	GGGCCC	1 cut(s)	273
PspPI	GGNCC	2 cut(s)	273, 274
PsuI	RGATCY	1 cut(s)	166
SatI	GCNGC	4 cut(s)	40, 43, 46, 311
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	2 cut(s)	273, 274
SchI	GAGTC	2 cut(s)	7, 49
SduI	GDGCHC	1 cut(s)	277
SetI	ASST	7 cut(s)	21, 163, 192, 237, 244, 291, 340
SfuI	TTCGAA	1 cut(s)	320
SsiI	CCGC	6 cut(s)	43, 46, 50, 164, 200, 311
SspMI	CTAG	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	283
TaqI	TCGA	3 cut(s)	76, 285, 320
TaqII	GACCGA	1 cut(s)	200
TauI	GCSGC	3 cut(s)	45, 48, 313
TfiI	GAWTC	1 cut(s)	359
TscAI	CASTG	1 cut(s)	142
TseI	GCWGC	1 cut(s)	39
TspRI	CASTG	1 cut(s)	142
XbaI	TCTAGA	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	34
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.