FvH4_4g15670

Uridine 5-monophosphate

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
19548616 .. 19550752
2137 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15670.t1

Sequence Viewer

Length: 1029 bp
ATGATAATCTTTTTCATTAGCCCATTTCAATATAAGAGAGAGAATAATTGGCCGGAACCTTACCGGACTCCGGTCAACGGCCGCCGGATTCCGGTCACCGGTCGCCGGACTTTGATTGCCGGATTTCCCCGGTCACTGGTAACTCGGTTACTGGCCCCCAATAACTTAAGTTTTCTCCGGTCGTCGGATTCCGGTGACCATCCCTCATCCTCTGCCGTCAAATTCGGCAACTTCAAACTAAAATCTGGCATCTCCTCCCCAATCTACATTAACCTCCGCCTCATCATCTCCTACCCTTCCCTCCTCTGCCAAATCTCCCAAACCCTAATCGCCGCCGTCCCCTCCTCCACCCCTTACGACCTCCTCTGCGGCGTCCCCTACATTGCCCTCCCATCGCCACCTCCCGCGACGTCCCCATGCTCATGCGCCACAAGGAGGTCAAGGACTACGGCACCGCCAAGGCCATCGAGGACCTCGTCACCAGCGGCTTCGCTCCGTGCCGCCGGGTTGAAGGTCTGCGACGCCGTCATCTCCGACCGGTCAGACCAGTCGCGCCACCTCCTAGAGGATGCGATTGTCCTCAACCTGTCCGATCCGTCTATATCCGAGCTAGAGCTCGGTGTCCTGGACGACGCCGATCGGAGGACGATTGCGGGGATGGTGATGATGATGGCCAGGTGGCGGGTTAGGCGCGGCACGGTGGCAGACAGATCCGAGATCGGGGAGGCATGCGGCTTCGGAGGGGATGGGTACTCCGAGGTTAAGCATGTTGATGCGAGAGCAATCCTAGGATGGAGCCACTCTGCTGTGTGGTGCGAGTGTGCCGACGAGGGCGTCGGACTCCCAAGGGGGGTGGATTGTAATATCCCACATCGGCCAAACGGAGAGGGGTTATGTGCTGCCTTTTGGTGGCTCAACGGCTTCGGAGGGGATGGGTACTCCGAGGTTAAGCATGTTGATGCGAGAGCAATCCCAAAATGGGTGACCTACTGGGAAGCTGCTCCTGAGCTGCCGGAAACAATACCGTGA

Protein Analysis

343

Amino Acids

37.32

Weight (kDa)

8.52

Isoelectric Point (pI)

58.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 833
AatII GACGTC 1 cut(s) 413
AccB1I GGYRCC 1 cut(s) 451
AccII CGCG 3 cut(s) 407, 553, 693
AclWI GGATC 2 cut(s) 587, 705
AcoI YGGCCR 4 cut(s) 50, 79, 672, 875
AcsI RAATTY 1 cut(s) 221
AcyI GRCGYC 5 cut(s) 372, 410, 522, 633, 834
AfaI GTAC 2 cut(s) 752, 938
AflII CTTAAG 1 cut(s) 166
AgeI ACCGGT 2 cut(s) 98, 537
AgsI TTSAA 3 cut(s) 29, 235, 511
AjnI CCWGG 2 cut(s) 624, 674
AluBI AGCT 4 cut(s) 610, 616, 998, 1009
AluI AGCT 4 cut(s) 610, 616, 998, 1009
Alw21I GWGCWC 1 cut(s) 618
AlwI GGATC 2 cut(s) 587, 705
AoxI GGCC 6 cut(s) 50, 79, 153, 461, 672, 875
ApeKI GCWGC 3 cut(s) 899, 998, 1009
ApoI RAATTY 1 cut(s) 221
AsiGI ACCGGT 2 cut(s) 98, 537
AspA2I CCTAGG 1 cut(s) 787
AspLEI GCGC 3 cut(s) 428, 555, 693
AspS9I GGNCC 2 cut(s) 154, 471
AsuC2I CCSGG 2 cut(s) 130, 505
AsuHPI GGTGA 5 cut(s) 88, 206, 471, 673, 994
AvaII GGWCC 1 cut(s) 471
AvrII CCTAGG 1 cut(s) 787
BalI TGGCCA 1 cut(s) 674
BanI GGYRCC 1 cut(s) 451
BanII GRGCYC 1 cut(s) 618
Bbv12I GWGCWC 1 cut(s) 618
BbvI GCAGC 3 cut(s) 886, 985, 996
BccI CCATC 8 cut(s) 207, 400, 472, 652, 664, 740, 786, 926
BceAI ACGGC 6 cut(s) 94, 200, 320, 465, 509, 934
BciT130I CCWGG 2 cut(s) 626, 676
BcnI CCSGG 2 cut(s) 130, 505
BfaI CTAG 3 cut(s) 563, 611, 788
BfrI CTTAAG 1 cut(s) 166
BlnI CCTAGG 1 cut(s) 787
Bme1390I CCNGG 4 cut(s) 130, 505, 626, 676
Bme18I GGWCC 1 cut(s) 471
BmgT120I GGNCC 2 cut(s) 154, 471
BmiI GGNNCC 4 cut(s) 57, 156, 453, 797
BmrFI CCNGG 4 cut(s) 130, 505, 626, 676
BmrI ACTGGG 1 cut(s) 1000
BmsI GCATC 4 cut(s) 258, 559, 763, 949
BmuI ACTGGG 1 cut(s) 1000
BoxI GACNNNNGTC 1 cut(s) 71
Bpu10I CCTNAGC 1 cut(s) 1005
BpuMI CCSGG 2 cut(s) 130, 505
BsaHI GRCGYC 5 cut(s) 372, 410, 522, 633, 834
BsaJI CCNNGG 6 cut(s) 128, 458, 756, 787, 845, 942
BsaWI WCCGGW 7 cut(s) 63, 70, 91, 98, 177, 191, 537
Bse118I RCCGGY 2 cut(s) 98, 537
Bse1I ACTGG 4 cut(s) 141, 156, 547, 995
Bse3DI GCAATG 1 cut(s) 381
BseBI CCWGG 2 cut(s) 626, 676
BseDI CCNNGG 6 cut(s) 128, 458, 756, 787, 845, 942
BseGI GGATG 7 cut(s) 199, 206, 574, 663, 751, 797, 937
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 1 cut(s) 996
BseNI ACTGG 4 cut(s) 141, 156, 547, 995
BseRI GAGGAG 4 cut(s) 244, 293, 334, 353
BseX3I CGGCCG 1 cut(s) 79
BseXI GCAGC 3 cut(s) 886, 985, 996
Bsh1236I CGCG 3 cut(s) 407, 553, 693
Bsh1285I CGRYCG 5 cut(s) 82, 103, 182, 538, 640
BshFI GGCC 6 cut(s) 52, 81, 155, 463, 674, 877
BshNI GGYRCC 1 cut(s) 451
BshTI ACCGGT 2 cut(s) 98, 537
BsiEI CGRYCG 5 cut(s) 82, 103, 182, 538, 640
BsiHKAI GWGCWC 1 cut(s) 618
BslFI GGGAC 3 cut(s) 323, 359, 397
BsmFI GGGAC 3 cut(s) 323, 359, 397
BsnI GGCC 6 cut(s) 52, 81, 155, 463, 674, 877
Bsp1286I GDGCHC 1 cut(s) 618
Bsp143I GATC 4 cut(s) 592, 637, 710, 717
BspANI GGCC 6 cut(s) 52, 81, 155, 463, 674, 877
BspCNI CTCAG 1 cut(s) 997
BspFNI CGCG 3 cut(s) 407, 553, 693
BspLI GGNNCC 4 cut(s) 57, 156, 453, 797
BspPI GGATC 2 cut(s) 587, 705
BspT107I GGYRCC 1 cut(s) 451
BspTI CTTAAG 1 cut(s) 166
BsrDI GCAATG 1 cut(s) 381
BsrFI RCCGGY 2 cut(s) 98, 537
BsrI ACTGG 4 cut(s) 141, 156, 547, 995
BssAI RCCGGY 2 cut(s) 98, 537
BssECI CCNNGG 6 cut(s) 128, 458, 756, 787, 845, 942
BssMI GATC 4 cut(s) 592, 637, 710, 717
BssNI GRCGYC 5 cut(s) 372, 410, 522, 633, 834
BssT1I CCWWGG 3 cut(s) 458, 787, 845
Bst2UI CCWGG 2 cut(s) 626, 676
Bst4CI ACNGT 2 cut(s) 700, 1026
BstACI GRCGYC 5 cut(s) 372, 410, 522, 633, 834
BstAFI CTTAAG 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 730
BstDEI CTNAG 1 cut(s) 1005
BstEII GGTNACC 3 cut(s) 94, 194, 982
BstENI CCTNNNNNAGG 1 cut(s) 563
BstF5I GGATG 7 cut(s) 199, 206, 574, 663, 751, 797, 937
BstFNI CGCG 3 cut(s) 407, 553, 693
BstHHI GCGC 3 cut(s) 428, 555, 693
BstKTI GATC 4 cut(s) 595, 640, 713, 720
BstMBI GATC 4 cut(s) 592, 637, 710, 717
BstMCI CGRYCG 5 cut(s) 82, 103, 182, 538, 640
BstMWI GCNNNNNNNGC 1 cut(s) 688
BstNI CCWGG 2 cut(s) 626, 676
BstNSI RCATGY 3 cut(s) 732, 770, 956
BstPAI GACNNNNGTC 1 cut(s) 71
BstPI GGTNACC 3 cut(s) 94, 194, 982
BstSCI CCNGG 4 cut(s) 128, 503, 624, 674
BstUI CGCG 3 cut(s) 407, 553, 693
BstV1I GCAGC 3 cut(s) 886, 985, 996
BstX2I RGATCY 1 cut(s) 710
BstYI RGATCY 1 cut(s) 710
BstZI CGGCCG 1 cut(s) 79
BsuRI GGCC 6 cut(s) 52, 81, 155, 463, 674, 877
BtgZI GCGATG 1 cut(s) 378
BtsCI GGATG 7 cut(s) 199, 206, 574, 663, 751, 797, 937
BtsIMutI CAGTG 1 cut(s) 134
Cac8I GCNNGC 1 cut(s) 730
CfoI GCGC 3 cut(s) 428, 555, 693
Cfr10I RCCGGY 2 cut(s) 98, 537
Cfr13I GGNCC 2 cut(s) 154, 471
CseI GACGC 4 cut(s) 361, 530, 641, 823
Csp6I GTAC 2 cut(s) 751, 937
CspAI ACCGGT 2 cut(s) 98, 537
CspCI CAANNNNNGTGG 2 cut(s) 834, 869
CviAII CATG 5 cut(s) 417, 423, 729, 767, 953
CviQI GTAC 2 cut(s) 751, 937
DdeI CTNAG 1 cut(s) 1005
DpnI GATC 4 cut(s) 594, 639, 712, 719
DpnII GATC 4 cut(s) 592, 637, 710, 717
DrdI GACNNNNNNGTC 1 cut(s) 833
DseDI GACNNNNNNGTC 1 cut(s) 833
EaeI YGGCCR 4 cut(s) 50, 79, 672, 875
EagI CGGCCG 1 cut(s) 79
EciI GGCGGA 1 cut(s) 266
Ecl136II GAGCTC 1 cut(s) 616
EclXI CGGCCG 1 cut(s) 79
Eco130I CCWWGG 3 cut(s) 458, 787, 845
Eco24I GRGCYC 1 cut(s) 618
Eco47I GGWCC 1 cut(s) 471
Eco52I CGGCCG 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 616
Eco91I GGTNACC 3 cut(s) 94, 194, 982
EcoICRI GAGCTC 1 cut(s) 616
EcoNI CCTNNNNNAGG 1 cut(s) 563
EcoO109I RGGNCCY 1 cut(s) 471
EcoO65I GGTNACC 3 cut(s) 94, 194, 982
EcoRII CCWGG 2 cut(s) 624, 674
EcoT14I CCWWGG 3 cut(s) 458, 787, 845
EcoT38I GRGCYC 1 cut(s) 618
ErhI CCWWGG 3 cut(s) 458, 787, 845
FaeI CATG 5 cut(s) 420, 426, 732, 770, 956
FaiI YATR 8 cut(s) 33, 418, 424, 602, 730, 768, 895, 954
FaqI GGGAC 3 cut(s) 323, 359, 397
FatI CATG 5 cut(s) 416, 422, 728, 766, 952
FauI CCCGC 3 cut(s) 412, 646, 675
FokI GGATG 7 cut(s) 186, 193, 581, 670, 758, 804, 944
FriOI GRGCYC 1 cut(s) 618
FspBI CTAG 3 cut(s) 563, 611, 788
GlaI GCGC 3 cut(s) 427, 554, 692
HaeIII GGCC 6 cut(s) 52, 81, 155, 463, 674, 877
HgaI GACGC 4 cut(s) 361, 530, 641, 823
HhaI GCGC 3 cut(s) 428, 555, 693
Hin1I GRCGYC 5 cut(s) 372, 410, 522, 633, 834
Hin1II CATG 5 cut(s) 420, 426, 732, 770, 956
Hin6I GCGC 3 cut(s) 426, 553, 691
HinP1I GCGC 3 cut(s) 426, 553, 691
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 4 cut(s) 67, 88, 188, 840
HphI GGTGA 5 cut(s) 88, 206, 471, 673, 994
Hpy166II GTNNAC 1 cut(s) 76
Hpy188III TCNNGA 1 cut(s) 1004
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 6 cut(s) 187, 412, 524, 635, 830, 839
HpyAV CCTTC 2 cut(s) 306, 505
HpyCH4III ACNGT 2 cut(s) 700, 1026
HpyCH4IV ACGT 1 cut(s) 410
HpyF10VI GCNNNNNNNGC 1 cut(s) 688
HpyF3I CTNAG 1 cut(s) 1005
HpySE526I ACGT 1 cut(s) 410
Hsp92I GRCGYC 5 cut(s) 372, 410, 522, 633, 834
Hsp92II CATG 5 cut(s) 420, 426, 732, 770, 956
HspAI GCGC 3 cut(s) 426, 553, 691
Kzo9I GATC 4 cut(s) 592, 637, 710, 717
LmnI GCTCC 3 cut(s) 498, 795, 1006
Lsp1109I GCAGC 3 cut(s) 886, 985, 996
LweI GCATC 4 cut(s) 258, 559, 763, 949
MaeI CTAG 3 cut(s) 563, 611, 788
MaeII ACGT 1 cut(s) 410
MaeIII GTNAC 7 cut(s) 94, 132, 139, 147, 194, 477, 982
MalI GATC 4 cut(s) 594, 639, 712, 719
MboI GATC 4 cut(s) 592, 637, 710, 717
MflI RGATCY 1 cut(s) 710
MhlI GDGCHC 1 cut(s) 618
MlsI TGGCCA 1 cut(s) 674
MluCI AATT 2 cut(s) 46, 221
MluNI TGGCCA 1 cut(s) 674
MlyI GAGTC 2 cut(s) 61, 834
MmeI TCCRAC 3 cut(s) 165, 558, 817
Mox20I TGGCCA 1 cut(s) 674
MscI TGGCCA 1 cut(s) 674
MseI TTAA 4 cut(s) 167, 270, 762, 948
MslI CAYNNNNRTG 3 cut(s) 421, 771, 957
Msp20I TGGCCA 1 cut(s) 674
MspA1I CMGCKG 1 cut(s) 485
MspCI CTTAAG 1 cut(s) 166
MspR9I CCNGG 4 cut(s) 130, 505, 626, 676
MvaI CCWGG 2 cut(s) 626, 676
MvnI CGCG 3 cut(s) 407, 553, 693
MwoI GCNNNNNNNGC 1 cut(s) 688
NciI CCSGG 2 cut(s) 130, 505
NdeII GATC 4 cut(s) 592, 637, 710, 717
NlaIII CATG 5 cut(s) 420, 426, 732, 770, 956
NlaIV GGNNCC 4 cut(s) 57, 156, 453, 797
NmuCI GTSAC 5 cut(s) 94, 132, 194, 477, 982
NspI RCATGY 3 cut(s) 732, 770, 956
PaeI GCATGC 1 cut(s) 732
PcsI WCGNNNNNNNCGW 1 cut(s) 473
PfeI GAWTC 2 cut(s) 88, 188
PflFI GACNNNGTC 2 cut(s) 475, 524
PfoI TCCNGGA 1 cut(s) 624
PinAI ACCGGT 2 cut(s) 98, 537
Ple19I CGATCG 1 cut(s) 640
PleI GAGTC 2 cut(s) 61, 834
PpsI GAGTC 2 cut(s) 61, 834
PpuMI RGGWCCY 1 cut(s) 471
PshAI GACNNNNGTC 1 cut(s) 71
Psp124BI GAGCTC 1 cut(s) 618
Psp5II RGGWCCY 1 cut(s) 471
Psp6I CCWGG 2 cut(s) 624, 674
PspEI GGTNACC 3 cut(s) 94, 194, 982
PspGI CCWGG 2 cut(s) 624, 674
PspN4I GGNNCC 4 cut(s) 57, 156, 453, 797
PspPI GGNCC 2 cut(s) 154, 471
PspPPI RGGWCCY 1 cut(s) 471
PsuI RGATCY 1 cut(s) 710
PsyI GACNNNGTC 2 cut(s) 475, 524
PvuI CGATCG 1 cut(s) 640
RsaI GTAC 2 cut(s) 752, 938
RsaNI GTAC 2 cut(s) 751, 937
RseI CAYNNNNRTG 3 cut(s) 421, 771, 957
SacI GAGCTC 1 cut(s) 618
SaqAI TTAA 4 cut(s) 167, 270, 762, 948
Sau3AI GATC 4 cut(s) 592, 637, 710, 717
Sau96I GGNCC 2 cut(s) 154, 471
SchI GAGTC 2 cut(s) 61, 834
ScrFI CCNGG 4 cut(s) 130, 505, 626, 676
SduI GDGCHC 1 cut(s) 618
SfaNI GCATC 4 cut(s) 258, 559, 763, 949
SinI GGWCC 1 cut(s) 471
SmiMI CAYNNNNRTG 3 cut(s) 421, 771, 957
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
SphI GCATGC 1 cut(s) 732
Sse9I AATT 2 cut(s) 46, 221
SspMI CTAG 3 cut(s) 563, 611, 788
SstI GAGCTC 1 cut(s) 618
StyD4I CCNGG 4 cut(s) 128, 503, 624, 674
StyI CCWWGG 3 cut(s) 458, 787, 845
TaaI ACNGT 2 cut(s) 700, 1026
TaiI ACGT 1 cut(s) 413
TaqI TCGA 1 cut(s) 467
TasI AATT 2 cut(s) 46, 221
TauI GCSGC 7 cut(s) 84, 335, 372, 488, 503, 696, 735
TfiI GAWTC 2 cut(s) 88, 188
Tru1I TTAA 4 cut(s) 167, 270, 762, 948
Tru9I TTAA 4 cut(s) 167, 270, 762, 948
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 5 cut(s) 94, 132, 194, 477, 982
TseI GCWGC 3 cut(s) 899, 998, 1009
Tsp45I GTSAC 5 cut(s) 94, 132, 194, 477, 982
TspDTI ATGAA 1 cut(s) 4
TspGWI ACGGA 3 cut(s) 485, 585, 897
TspRI CASTG 1 cut(s) 141
Tth111I GACNNNGTC 2 cut(s) 475, 524
Vha464I CTTAAG 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 471
XagI CCTNNNNNAGG 1 cut(s) 563
XapI RAATTY 1 cut(s) 221
XceI RCATGY 3 cut(s) 732, 770, 956
XmaJI CCTAGG 1 cut(s) 787
XspI CTAG 3 cut(s) 563, 611, 788
ZraI GACGTC 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.