Rh1DG057600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000607
Physical Location & Seq
Reverse (-)
9384471 .. 9385040
570 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG057600.1

Sequence Viewer

Length: 570 bp
ATGAAGATGCACACCACCTGTTCGATTAAATGCTCAACTTCGAGATGTGGCTATTGCTTTGATGATTGCTCAACCTATTCGATAAATGTAACCGTTAAAAAGTTCATGGTTGTTTTGACAGGTATTATTGGTCCTTTTACTGTGGTGTGCAAGATGTCTTCACTGGAAGAAACACTCCCCATTGTGAACTGGGATCATAAGAAGCCTAGTATCGATATTGCAGGTAGCCTTATGGTCCCCGCATTGGATGAAAAGCATAAGCATATCTCTGATGAATATGAGAAGGAAGACGACTCAAAGCCAATACATACGCACACATGTTCTGCTGTTGAAGAAGGATTTTGCATCCATATCGCCGATGTCACTAAAAGACCATGCGGCACATGCGCACACCTGTACAATGTCGGTCTAGACAACAAAAAGAGATGCAGTTGTATCTTATGCCACTGGGAAGAGAAACAAGATGGGAATGCCAATTCACCTCCCTTAGGTTATTGGTGGTGGCCTAGTGACTCTGAATTCTCTCCAGATATTGATGATTTTCACCAAGCAAGTGTTCTATGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.37

Weight (kDa)

5.62

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 388
Acc36I ACCTGC 1 cut(s) 212
AciI CCGC 2 cut(s) 240, 378
AclWI GGATC 1 cut(s) 201
AcsI RAATTY 1 cut(s) 518
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 2 cut(s) 244, 488
AflIII ACRYGT 1 cut(s) 317
AgsI TTSAA 1 cut(s) 332
AjuI GAANNNNNNNTTGG 1 cut(s) 540
AlwI GGATC 1 cut(s) 201
AoxI GGCC 1 cut(s) 503
ApoI RAATTY 1 cut(s) 518
AspLEI GCGC 1 cut(s) 389
AspS9I GGNCC 2 cut(s) 131, 235
AsuHPI GGTGA 2 cut(s) 471, 536
AvaII GGWCC 2 cut(s) 131, 235
AxyI CCTNAGG 1 cut(s) 487
BbsI GAAGAC 2 cut(s) 150, 294
BccI CCATC 1 cut(s) 458
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BfaI CTAG 3 cut(s) 207, 410, 507
BfuAI ACCTGC 1 cut(s) 212
BisI GCNGC 1 cut(s) 379
BlsI GCNGC 1 cut(s) 380
Bme18I GGWCC 2 cut(s) 131, 235
BmgT120I GGNCC 2 cut(s) 131, 235
BmiI GGNNCC 1 cut(s) 237
BmrI ACTGGG 2 cut(s) 199, 457
BmsI GCATC 2 cut(s) 354, 416
BmuI ACTGGG 2 cut(s) 199, 457
BpiI GAAGAC 2 cut(s) 150, 294
BpmI CTGGAG 1 cut(s) 510
Bsa29I ATCGAT 1 cut(s) 213
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 488
Bse1I ACTGG 3 cut(s) 168, 194, 452
Bse21I CCTNAGG 1 cut(s) 487
BseCI ATCGAT 1 cut(s) 213
BseGI GGATG 3 cut(s) 253, 345, 570
BseLI CCNNNNNNNGG 2 cut(s) 244, 488
BseNI ACTGG 3 cut(s) 168, 194, 452
BshFI GGCC 1 cut(s) 505
BshVI ATCGAT 1 cut(s) 213
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 2 cut(s) 244, 488
BsmFI GGGAC 1 cut(s) 221
BsmI GAATGC 1 cut(s) 475
BsnI GGCC 1 cut(s) 505
Bsp1407I TGTACA 1 cut(s) 396
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 2 cut(s) 240, 378
BspANI GGCC 1 cut(s) 505
BspDI ATCGAT 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 237
BspMI ACCTGC 1 cut(s) 212
BspPI GGATC 1 cut(s) 201
BsrGI TGTACA 1 cut(s) 396
BsrI ACTGG 3 cut(s) 168, 194, 452
BssMI GATC 1 cut(s) 193
Bst4CI ACNGT 2 cut(s) 94, 142
Bst6I CTCTTC 1 cut(s) 447
BstAUI TGTACA 1 cut(s) 396
BstDEI CTNAG 1 cut(s) 487
BstENI CCTNNNNNAGG 1 cut(s) 486
BstF5I GGATG 3 cut(s) 253, 345, 570
BstHHI GCGC 1 cut(s) 389
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 384
BstNSI RCATGY 2 cut(s) 321, 387
BstV2I GAAGAC 2 cut(s) 150, 294
Bsu15I ATCGAT 1 cut(s) 213
Bsu36I CCTNAGG 1 cut(s) 487
BsuRI GGCC 1 cut(s) 505
BsuTUI ATCGAT 1 cut(s) 213
BtsCI GGATG 3 cut(s) 253, 345, 570
BtsIMutI CAGTG 2 cut(s) 161, 445
BveI ACCTGC 1 cut(s) 212
CfoI GCGC 1 cut(s) 389
Cfr13I GGNCC 2 cut(s) 131, 235
ClaI ATCGAT 1 cut(s) 213
Csp6I GTAC 1 cut(s) 397
CviAII CATG 4 cut(s) 106, 318, 375, 384
CviJI RGCY 5 cut(s) 51, 205, 228, 301, 505
CviKI_1 RGCY 5 cut(s) 51, 205, 228, 301, 505
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 1 cut(s) 487
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
Eco47I GGWCC 2 cut(s) 131, 235
Eco81I CCTNAGG 1 cut(s) 487
EcoNI CCTNNNNNAGG 1 cut(s) 486
EcoRI GAATTC 1 cut(s) 518
FaeI CATG 4 cut(s) 109, 321, 378, 387
FaqI GGGAC 1 cut(s) 221
FatI CATG 4 cut(s) 105, 317, 374, 383
FauI CCCGC 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 379
FokI GGATG 2 cut(s) 260, 332
Fsp4HI GCNGC 1 cut(s) 379
FspAI RTGCGCAY 1 cut(s) 388
FspBI CTAG 3 cut(s) 207, 410, 507
FspI TGCGCA 1 cut(s) 388
GlaI GCGC 1 cut(s) 388
GluI GCNGC 1 cut(s) 379
GsuI CTGGAG 1 cut(s) 510
HaeIII GGCC 1 cut(s) 505
HhaI GCGC 1 cut(s) 389
Hin1II CATG 4 cut(s) 109, 321, 378, 387
Hin6I GCGC 1 cut(s) 387
HinP1I GCGC 1 cut(s) 387
HinfI GANTC 2 cut(s) 293, 512
HphI GGTGA 2 cut(s) 471, 536
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 271, 517
Hpy188III TCNNGA 3 cut(s) 42, 410, 527
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 2 cut(s) 277, 329
HpyCH4III ACNGT 2 cut(s) 94, 142
HpyCH4V TGCA 5 cut(s) 10, 150, 221, 345, 429
HpyF10VI GCNNNNNNNGC 1 cut(s) 384
HpyF3I CTNAG 1 cut(s) 487
Hsp92II CATG 4 cut(s) 109, 321, 378, 387
HspAI GCGC 1 cut(s) 387
Kzo9I GATC 1 cut(s) 193
LpnPI CCDG 8 cut(s) 31, 105, 149, 175, 207, 407, 433, 540
LweI GCATC 2 cut(s) 354, 416
MaeI CTAG 3 cut(s) 207, 410, 507
MaeIII GTNAC 3 cut(s) 88, 361, 509
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 6 cut(s) 16, 150, 179, 299, 344, 464
MluCI AATT 2 cut(s) 475, 518
MlyI GAGTC 2 cut(s) 287, 506
MnlI CCTC 1 cut(s) 492
MseI TTAA 2 cut(s) 27, 96
Mva1269I GAATGC 1 cut(s) 475
MwoI GCNNNNNNNGC 1 cut(s) 384
NdeII GATC 1 cut(s) 193
NlaIII CATG 4 cut(s) 109, 321, 378, 387
NlaIV GGNNCC 1 cut(s) 237
NmuCI GTSAC 2 cut(s) 361, 509
NsbI TGCGCA 1 cut(s) 388
NspI RCATGY 2 cut(s) 321, 387
PciI ACATGT 1 cut(s) 317
PctI GAATGC 1 cut(s) 475
PkrI GCNGC 1 cut(s) 380
PleI GAGTC 2 cut(s) 287, 506
PpsI GAGTC 2 cut(s) 287, 506
PscI ACATGT 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 237
PspPI GGNCC 2 cut(s) 131, 235
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
SaqAI TTAA 2 cut(s) 27, 96
SatI GCNGC 1 cut(s) 379
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 2 cut(s) 131, 235
SchI GAGTC 2 cut(s) 287, 506
SetI ASST 7 cut(s) 20, 77, 124, 226, 396, 484, 493
SfaNI GCATC 2 cut(s) 354, 416
SinI GGWCC 2 cut(s) 131, 235
Sse9I AATT 2 cut(s) 475, 518
SsiI CCGC 2 cut(s) 240, 378
SspMI CTAG 3 cut(s) 207, 410, 507
TaaI ACNGT 2 cut(s) 94, 142
TaqI TCGA 4 cut(s) 23, 41, 80, 213
TaqII GACCGA 1 cut(s) 395
TasI AATT 2 cut(s) 475, 518
TatI WGTACW 1 cut(s) 396
TauI GCSGC 1 cut(s) 381
Tru1I TTAA 2 cut(s) 27, 96
Tru9I TTAA 2 cut(s) 27, 96
TscAI CASTG 2 cut(s) 168, 452
TseFI GTSAC 2 cut(s) 361, 509
Tsp45I GTSAC 2 cut(s) 361, 509
TspDTI ATGAA 4 cut(s) 17, 94, 264, 288
TspRI CASTG 2 cut(s) 168, 452
VpaK11BI GGWCC 2 cut(s) 131, 235
XagI CCTNNNNNAGG 1 cut(s) 486
XapI RAATTY 1 cut(s) 518
XbaI TCTAGA 1 cut(s) 409
XceI RCATGY 2 cut(s) 321, 387
XspI CTAG 3 cut(s) 207, 410, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.