Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000607

Physical Location & Seq

Genomic Coordinates Reverse (-)

11297818 .. 11298205

Gene Structure 388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17741.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGATCCGTCTATTGCGGAGCAACTACGAAAAGCAAAACCTAGGTTTTGCACGAGGGGAGGGTTGCATGCTTTCTCAACCAAGAAAGGAGGTTGAGGCTGCTTTGGTAAGGCGAATCTGGGGCAGGTTAGGTGAGGAAGAAGGTCGGCGAGCGTCGGCAAAGTTGACGAGTCTGATCAGTCCTATGATCGGCGAGCCTTTCGATCCGATGAATGGATGGGTTGGCTGCAAGGTGGTGACTGTGGGGCTCCAGTTAGGTCCGATGGCACCAATTGAACTATTCCAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.7

Weight (kDa)

9.23

Isoelectric Point (pI)

52.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000607)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29041 FvH4_2g05300 FvH4_2g08491 FvH4_2g12592 FvH4_2g16601 FvH4_3g17521 FvH4_3g17741 FvH4_3g23821 FvH4_3g26292 FvH4_3g26554 FvH4_3g31811 FvH4_3g31840 FvH4_3g31881 FvH4_3g43760 FvH4_3g46000 FvH4_4g00252 FvH4_4g00253 FvH4_4g08102 FvH4_4g08643 FvH4_4g08976 FvH4_4g10123 FvH4_4g10211 FvH4_4g15670 FvH4_4g16722 FvH4_4g22041 FvH4_4g26211 FvH4_4g28751 FvH4_4g33572 FvH4_5g14271 FvH4_5g16041 FvH4_5g18831 FvH4_5g21091 FvH4_5g24054 FvH4_5g25100 FvH4_5g25922 FvH4_5g28641 FvH4_5g30671 FvH4_5g37992 FvH4_6g12050 FvH4_6g19900 FvH4_6g20111 FvH4_6g27110 FvH4_6g30731 FvH4_7g03533 FvH4_7g03535 FvH4_7g04902
prunus_persica	Prupe.7G011500_v2.0.a1
pyrus_communis	pycom13g23420
rosa_laevigata	RLG00000001881 RLG00000009213 RLG00000013649 RLG00000019918 RLG00000022552 RLG00000023369
rosa_multiflora	Rmu_co8122264.1_g000001 Rmu_sc0000308.1_g000015 Rmu_sc0001498.1_g000012 Rmu_sc0002268.1_g000018 Rmu_sc0003433.1_g000009 Rmu_sc0003776.1_g000024 Rmu_sc0004702.1_g000009 Rmu_sc0005399.1_g000009 Rmu_sc0005578.1_g000002 Rmu_sc0005580.1_g000010 Rmu_sc0012425.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226140 Rroxscaffold_3G00229900 Rroxscaffold_3G00229910 Rroxscaffold_4G00317870 Rroxscaffold_6G00401500
rosa_rugosa	Rorug07G0258900
rosa_samantha	Rh1DG057600 Rh6AG088300 Rh7DG367800 Rh7DG408700
rosa_wichuraiana	Rw1G008000 Rw6G012040 Rw7G021280 Rw7G034100 Rw7G040490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	265
AciI	CCGC	1 cut(s)	16
AclWI	GGATC	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	188, 212
AgsI	TTSAA	1 cut(s)	275
AlwI	GGATC	1 cut(s)	197
ApeKI	GCWGC	2 cut(s)	98, 225
AspA2I	CCTAGG	1 cut(s)	40
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	143, 247
AvaII	GGWCC	1 cut(s)	257
AvrII	CCTAGG	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	249
BauI	CACGAG	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	85, 212
BccI	CCATC	2 cut(s)	210, 256
BclI	TGATCA	1 cut(s)	174
BfaI	CTAG	2 cut(s)	41, 289
BfuAI	ACCTGC	1 cut(s)	114
BisI	GCNGC	2 cut(s)	99, 226
BlnI	CCTAGG	1 cut(s)	40
BlsI	GCNGC	2 cut(s)	100, 227
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	2 cut(s)	248, 267
BpmI	CTGGAG	1 cut(s)	233
BsaJI	CCNNGG	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	2 cut(s)	188, 212
Bse1I	ACTGG	1 cut(s)	250
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	221
BseLI	CCNNNNNNNGG	2 cut(s)	188, 212
BseNI	ACTGG	1 cut(s)	250
BseXI	GCAGC	2 cut(s)	85, 212
BshNI	GGYRCC	1 cut(s)	265
BslI	CCNNNNNNNGG	2 cut(s)	188, 212
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	4 cut(s)	3, 174, 186, 202
BspACI	CCGC	1 cut(s)	16
BspLI	GGNNCC	2 cut(s)	248, 267
BspMI	ACCTGC	1 cut(s)	114
BspPI	GGATC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	4 cut(s)	3, 174, 186, 202
BssSI	CACGAG	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	40
Bst2BI	CACGAG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	241
BstC8I	GCNNGC	3 cut(s)	68, 150, 194
BstF5I	GGATG	1 cut(s)	221
BstKTI	GATC	4 cut(s)	6, 177, 189, 205
BstMBI	GATC	4 cut(s)	3, 174, 186, 202
BstNSI	RCATGY	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	85, 212
BtsCI	GGATG	1 cut(s)	221
BveI	ACCTGC	1 cut(s)	114
Cac8I	GCNNGC	3 cut(s)	68, 150, 194
Cfr13I	GGNCC	1 cut(s)	257
CseI	GACGC	1 cut(s)	141
CviAII	CATG	1 cut(s)	67
CviJI	RGCY	4 cut(s)	98, 196, 225, 247
CviKI_1	RGCY	4 cut(s)	98, 196, 225, 247
DpnI	GATC	4 cut(s)	5, 176, 188, 204
DpnII	GATC	4 cut(s)	3, 174, 186, 202
Eco130I	CCWWGG	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	1 cut(s)	70
FaiI	YATR	2 cut(s)	68, 185
FatI	CATG	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	99, 226
FokI	GGATG	1 cut(s)	228
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	2 cut(s)	99, 226
FspBI	CTAG	2 cut(s)	41, 289
GluI	GCNGC	2 cut(s)	99, 226
GsuI	CTGGAG	1 cut(s)	233
HgaI	GACGC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HinfI	GANTC	2 cut(s)	114, 169
HphI	GGTGA	2 cut(s)	143, 247
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	3 cut(s)	174, 207, 261
Hpy8I	GTNNAC	1 cut(s)	165
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	3 cut(s)	50, 66, 228
Hsp92II	CATG	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	4 cut(s)	3, 174, 186, 202
LmnI	GCTCC	2 cut(s)	18, 252
LpnPI	CCDG	3 cut(s)	103, 109, 263
Lsp1109I	GCAGC	2 cut(s)	85, 212
MaeI	CTAG	2 cut(s)	41, 289
MaeIII	GTNAC	1 cut(s)	235
MalI	GATC	4 cut(s)	5, 176, 188, 204
MboI	GATC	4 cut(s)	3, 174, 186, 202
MboII	GAAGA	1 cut(s)	149
MfeI	CAATTG	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	178
MnlI	CCTC	5 cut(s)	47, 52, 82, 88, 127
MunI	CAATTG	1 cut(s)	270
NdeII	GATC	4 cut(s)	3, 174, 186, 202
NlaIII	CATG	1 cut(s)	70
NlaIV	GGNNCC	2 cut(s)	248, 267
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	1 cut(s)	70
PaeI	GCATGC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	100, 227
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
PspN4I	GGNNCC	2 cut(s)	248, 267
PspPI	GGNCC	1 cut(s)	257
SatI	GCNGC	2 cut(s)	99, 226
Sau3AI	GATC	4 cut(s)	3, 174, 186, 202
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	178
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	8 cut(s)	42, 46, 93, 128, 133, 145, 234, 259
SinI	GGWCC	1 cut(s)	257
SphI	GCATGC	1 cut(s)	70
Sse9I	AATT	1 cut(s)	270
SsiI	CCGC	1 cut(s)	16
SspMI	CTAG	2 cut(s)	41, 289
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	201
TasI	AATT	1 cut(s)	270
TfiI	GAWTC	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	2 cut(s)	98, 225
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	257
XceI	RCATGY	1 cut(s)	70
XmaJI	CCTAGG	1 cut(s)	40
XspI	CTAG	2 cut(s)	41, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.