Rroxscaffold_6G00401500

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000607
Physical Location & Seq
Forward (+)
23857882 .. 23860158
2277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401500.1

Sequence Viewer

Length: 315 bp
ATGAAACGGTGGAGACATACACTTGGCTGTTGCATTTCATTTTTGGATGCAATGAATGGGACGATGCCAATAATCGTACTCATAGATGGAGATGAAGCCATGCGCGATGCAATTGAAGACGTGATGCCACATGCAAAGCACCGTCTTTGTGCTTGGCACCTTTCCAAAAATGCCAACACTAATTTGAAGTGCGACGAAAAGTTGAAAGCTTTTAACAGGTGCATGAGAAAATTCCAAACTTTGGAGCAGTTCGAAGTAATGTGGCATGACATGGTGGAGAAATTCGATCTCCACAACAGCTTCGGATCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

104

Amino Acids

12.2

Weight (kDa)

7.0

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 10 - 57 7.4e-10 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 156
AccB7I CCANNNNNTGG 1 cut(s) 241
AccII CGCG 1 cut(s) 105
AclWI GGATC 1 cut(s) 313
AcsI RAATTY 2 cut(s) 230, 281
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 3 cut(s) 116, 187, 205
AjiI CACGTC 1 cut(s) 121
AluBI AGCT 2 cut(s) 209, 300
AluI AGCT 2 cut(s) 209, 300
Alw26I GTCTC 1 cut(s) 7
AlwI GGATC 1 cut(s) 313
ApoI RAATTY 2 cut(s) 230, 281
AspLEI GCGC 1 cut(s) 105
AsuII TTCGAA 1 cut(s) 252
BanI GGYRCC 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 123
BccI CCATC 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 7
BmgBI CACGTC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 158
BmsI GCATC 4 cut(s) 37, 54, 97, 114
BpiI GAAGAC 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 252
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse3DI GCAATG 1 cut(s) 57
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 105
BshNI GGYRCC 1 cut(s) 156
BslFI GGGAC 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 7
BsmFI GGGAC 1 cut(s) 73
Bsp119I TTCGAA 1 cut(s) 252
Bsp143I GATC 2 cut(s) 286, 305
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 158
BspPI GGATC 1 cut(s) 313
BspT104I TTCGAA 1 cut(s) 252
BspT107I GGYRCC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 57
BssMI GATC 2 cut(s) 286, 305
Bst4CI ACNGT 2 cut(s) 9, 143
BstBI TTCGAA 1 cut(s) 252
BstF5I GGATG 1 cut(s) 52
BstFNI CGCG 1 cut(s) 105
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 2 cut(s) 289, 308
BstMAI GTCTC 1 cut(s) 7
BstMBI GATC 2 cut(s) 286, 305
BstNSI RCATGY 1 cut(s) 134
BstUI CGCG 1 cut(s) 105
BstV2I GAAGAC 1 cut(s) 123
BtgZI GCGATG 1 cut(s) 120
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 52
CfoI GCGC 1 cut(s) 105
Csp6I GTAC 1 cut(s) 77
CviAII CATG 6 cut(s) 100, 131, 223, 266, 271, 312
CviJI RGCY 4 cut(s) 27, 98, 209, 300
CviKI_1 RGCY 4 cut(s) 27, 98, 209, 300
CviQI GTAC 1 cut(s) 77
DpnI GATC 2 cut(s) 288, 307
DpnII GATC 2 cut(s) 286, 305
FaeI CATG 6 cut(s) 103, 134, 226, 269, 274, 315
FaiI YATR 8 cut(s) 18, 83, 101, 132, 224, 267, 272, 313
FaqI GGGAC 1 cut(s) 73
FatI CATG 6 cut(s) 99, 130, 222, 265, 270, 311
FokI GGATG 1 cut(s) 59
GlaI GCGC 1 cut(s) 104
HhaI GCGC 1 cut(s) 105
Hin1II CATG 6 cut(s) 103, 134, 226, 269, 274, 315
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 207
Hpy188I TCNGA 1 cut(s) 305
Hpy99I CGWCG 1 cut(s) 197
HpyCH4III ACNGT 2 cut(s) 9, 143
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 5 cut(s) 33, 50, 110, 134, 222
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 6 cut(s) 103, 134, 226, 269, 274, 315
HspAI GCGC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 286, 305
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 1 cut(s) 202
LweI GCATC 4 cut(s) 37, 54, 97, 114
MaeII ACGT 1 cut(s) 120
MalI GATC 2 cut(s) 288, 307
MboI GATC 2 cut(s) 286, 305
MboII GAAGA 1 cut(s) 128
MfeI CAATTG 1 cut(s) 111
MluCI AATT 4 cut(s) 111, 181, 230, 281
MseI TTAA 1 cut(s) 213
MunI CAATTG 1 cut(s) 111
MvnI CGCG 1 cut(s) 105
NdeII GATC 2 cut(s) 286, 305
NlaIII CATG 6 cut(s) 103, 134, 226, 269, 274, 315
NlaIV GGNNCC 1 cut(s) 158
NspI RCATGY 1 cut(s) 134
NspV TTCGAA 1 cut(s) 252
PflMI CCANNNNNTGG 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 158
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SaqAI TTAA 1 cut(s) 213
Sau3AI GATC 2 cut(s) 286, 305
SetI ASST 5 cut(s) 123, 162, 211, 221, 302
SfaNI GCATC 4 cut(s) 37, 54, 97, 114
SfuI TTCGAA 1 cut(s) 252
Sse9I AATT 4 cut(s) 111, 181, 230, 281
TaaI ACNGT 2 cut(s) 9, 143
TaiI ACGT 1 cut(s) 123
TaqI TCGA 2 cut(s) 252, 285
TasI AATT 4 cut(s) 111, 181, 230, 281
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TspDTI ATGAA 4 cut(s) 17, 27, 68, 108
Van91I CCANNNNNTGG 1 cut(s) 241
XapI RAATTY 2 cut(s) 230, 281
XceI RCATGY 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.