FvH4_1g29720

Retroviral aspartyl protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000060
Physical Location & Seq
Reverse (-)
23051282 .. 23062719
11438 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29720.t1

Sequence Viewer

Length: 2427 bp
ATGAATAGATACAAGGAGAGCATCCTAGTAGAATCATGGGAGTTGATAAACAACACTTGTTTTCGGGGAATAATTGAAGCATTCAGATTGGGCAAGGTTGAGGAGGATCAAGTGAAGAAGCTTGAATCTGATTTTGAGATCCTAATGAGGCACTACAACAGTGACAATAAAAACTTCATATTTGGGAATAGGGAGATTAAAATTACGGAGCATGATGATCATTCAATTTTTGGAATAACCAAAGAAGGCTCGGATGTGGATATCACAATAGACCAGAAATACTGCAAGGGCAAGATCAGAAAGATTCAGAAGAAGAAGGGGGATCCAAGGAAGATAGCCTCTTTGGTTATAATGTACCTTATGACAGCTTTATTTTTTAGCAGAAGCGGGAACCACATTGAATGGAAACTGATACTCAAGTGTGAAGACCTTGAAGGCATTGACAAATACAACTGGTCACATAAGGTATTAGAATTCTTGCACCAAGGACTTCACAAGCACGTAAGGGGGGAGCCAAGAGTTTTGAACGGATGCCTCCTTCTGGTTCTAAACTGGTTCCTTGAGAAAACAAAAATAAAGAAGCGGATTATCGGGAAAGAGAAGGAGACTCCTAGATTTATAAGATGGTCAATACAAGAGATCATCAAAGAAAAGGAGTATTTGAGAAGACCTGAATTGGTAGAGGAACTCATAATAGAAGGTCCATGGATGGATGAGGAGGAAACGAGTTCCGGCAATGATGAGCAGCAGCAAGATGACAATAGAACACCAAGGACAATTGATTGGCTGCCAATGGAAGATATGAAGAAGAAGCTGACAGAACTTGCCAAAGCAAATAAAGAACTAGTGAACAAAAACACTGAATTGCTCGTAGCAGAACCAGTTCCGTTGCGAAAGATATTTCTAGAAGACGATGAACCTGTGACGACAGATGTCAACCTGTCTAAACTTGACAAACTTGTTGATCAAGCTACTGGTTCGATTGAAAGAGACGTCAACCTGAAGAAGCGTGGGGCACAAAAGAGGATAGAAGAAGAATGGGAGTATGACACCCCTGAAGGGCTAAATCTAGCAAAAAGAACAAAGGAGGTGGAGCATAAAGTCCAAGATCGTATTGTTATTGATGGAGTGAACTGCAACACTGATACATGGAAGCTCTTGGATGAAAAGGAGTGTTGTGATGGTATCATTGACATTACCAAAGATGACTTGAAGAGAATAATTCAAGAAGGAGAGATTACATCTAATACCATTAGGGTGTACCTCGCAATGTTGAAGGAAGAAATGGAAAAGAAGAAGGTCTCGGTCGGATTCCTAGACATAGAGGCAGCGCGCACGGCGGTGGTACATGAAAAAAAACTGAAGGAGTTCCTAGCTGGAGGAGGAAAACAGGGGGAATTCAAATGTAATGAATTGGATATGGAGCTTTCCATTATTAATCCTCTGTGGTCCATCTTCAGTAAAGACCTGATTTTCATTCCGGTACATCACGGGGTCAGCCACCACTATACCTTGGTCTTGATTGACAAAGAAGCTCGATGCTTCTATCACCTGAACTCAATGCTGTCGCCAAGGAAAGATTACTCTACCGACACCAACAACCACTTTCAGAATGCAATGGCAGTGAACCAACAGGTGAAGCACATTATGGTGTTCATCAAACGCGTATATGATTCCACCAAATACCCTCTCAGCCAAGGCTTGGACCTTGAGGAATGGAGGGAAAACTATGACAAGCAAGACAGCCAAGGAATAGTGGTTGACGGTTACTCGATGATGAGTGCTGAAGAGAAAAGAACAAAAAGATGGATGCTGGACCAAAATGTTTATCAAGCAAGATACAAGTTGAAAGATATCTTATCCTGCCCGCAGCAAAAGAAAACATCAGTATATGCCATTGGTCAGCGTGGTGCAAGAGTGGAAGGTACCATTCTTGTTTATGATATGCTTGCTTCAGTTTTGTTTGATACGGGGGCAACCCATTCCTTCATATCTAGCTCGGTGGTGAGGGCATTAGGCTTGACTCCGACGCCGCTTACTAGATCTTTGTGTGTTTCTTCACCTCTCAGTGTTTCTATCGAGCTTGGCACTTTATGTGATGCTTGCTCTATAGTGATTAGTGGGAGAGAGTTCTTTGCTTCCCTGATTGTGATTTCAGACCGCTCCTATGATGTGATTTTGGGAGTGGATTGGCTAAGGCCAAACCGTGCTATGATTGACTGTTTTGATATGGTGGTGTCATTCCACATTCCTAGACAGCCGAGCTTTCGCTATCGTTGTCATAGGTCAGACACTGCCATGTGGGAAGGAGAGTGGCTCATGTTGGAGACTGCTTCTAAGTTTGGCATTCTGCCATCAGGCAAGGAGCAGGGGATCTTCCTTGGAAGCGCCTCTGTGCAGCCCACTTTGATTTTCAGGATCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 zf-CCHC

Protein Analysis

809

Amino Acids

93.41

Weight (kDa)

6.27

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 640 - 748 2.7e-30 Retroviral aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000060)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12321 FvH4_1g20524 FvH4_1g20530 FvH4_1g23171 FvH4_1g23680 FvH4_1g24741 FvH4_1g28820 FvH4_1g29280 FvH4_1g29720 FvH4_1g29863 FvH4_2g01890 FvH4_2g02830 FvH4_2g02900 FvH4_2g03221 FvH4_2g08390 FvH4_2g09410 FvH4_2g18180 FvH4_2g22690 FvH4_2g24331 FvH4_2g24332 FvH4_3g07040 FvH4_3g14115 FvH4_3g14832 FvH4_3g14840 FvH4_3g20080 FvH4_3g22851 FvH4_3g26680 FvH4_3g30870 FvH4_3g31130 FvH4_3g31290 FvH4_3g31340 FvH4_3g31511 FvH4_3g31540 FvH4_3g31630 FvH4_3g31650 FvH4_3g31718 FvH4_3g32160 FvH4_3g32170 FvH4_3g32440 FvH4_3g32704 FvH4_3g40980 FvH4_3g43750 FvH4_3g44630 FvH4_3g44640 FvH4_4g03490 FvH4_4g03491 FvH4_4g07032 FvH4_4g07033 FvH4_4g07034 FvH4_4g08150 FvH4_4g08260 FvH4_4g08530 FvH4_4g08574 FvH4_4g08592 FvH4_4g08722 FvH4_4g08780 FvH4_4g08970 FvH4_4g09900 FvH4_4g09920 FvH4_4g10200 FvH4_4g10272 FvH4_4g10300 FvH4_4g10310 FvH4_4g10311 FvH4_4g15272 FvH4_4g15273 FvH4_4g15920 FvH4_4g17740 FvH4_4g18650 FvH4_5g17873 FvH4_5g17874 FvH4_5g17875 FvH4_5g23330 FvH4_5g23340 FvH4_5g24282 FvH4_5g24283 FvH4_5g24921 FvH4_5g27850 FvH4_5g37401 FvH4_5g37402 FvH4_5g37521 FvH4_5g39780 FvH4_6g06710 FvH4_6g06720 FvH4_6g20370 FvH4_6g20960 FvH4_6g20970 FvH4_6g24332 FvH4_6g24333 FvH4_6g31350 FvH4_6g33380 FvH4_6g33570 FvH4_6g33600 FvH4_6g37990 FvH4_6g44210 FvH4_7g00311 FvH4_7g08490 FvH4_7g10290 FvH4_7g20281
rosa_chinensis RchiOBHm_Chr1g0318211 RchiOBHm_Chr1g0318221 RchiOBHm_Chr1g0363541 RchiOBHm_Chr3g0460221 RchiOBHm_Chr4g0421571 RchiOBHm_Chr4g0421591 RchiOBHm_Chr5g0072851 RchiOBHm_Chr6g0247251
rosa_laevigata RLG00000000827 RLG00000007666 RLG00000011058 RLG00000011382 RLG00000012708 RLG00000014760 RLG00000016708 RLG00000016784 RLG00000016785 RLG00000017723 RLG00000018763 RLG00000018764 RLG00000018909 RLG00000023051 RLG00000023566 RLG00000023567 RLG00000024838 RLG00000033855
rosa_multiflora Rmu_co8085188.1_g000001 Rmu_co8205198.1_g000001 Rmu_co8353999.1_g000001 Rmu_co8377151.1_g000001 Rmu_sc0000014.1_g000002 Rmu_sc0000023.1_g000002 Rmu_sc0000037.1_g000008 Rmu_sc0000087.1_g000004 Rmu_sc0000186.1_g000024 Rmu_sc0000218.1_g000015 Rmu_sc0000218.1_g000018 Rmu_sc0000270.1_g000005 Rmu_sc0000305.1_g000010 Rmu_sc0000305.1_g000012 Rmu_sc0000420.1_g000046 Rmu_sc0000431.1_g000018 Rmu_sc0000431.1_g000020 Rmu_sc0000549.1_g000001 Rmu_sc0000570.1_g000016 Rmu_sc0000600.1_g000007 Rmu_sc0000600.1_g000026 Rmu_sc0000712.1_g000001 Rmu_sc0000712.1_g000002 Rmu_sc0000718.1_g000039 Rmu_sc0000727.1_g000005 Rmu_sc0000765.1_g000034 Rmu_sc0000765.1_g000037 Rmu_sc0000776.1_g000058 Rmu_sc0000820.1_g000002 Rmu_sc0000820.1_g000004 Rmu_sc0000846.1_g000005 Rmu_sc0000846.1_g000006 Rmu_sc0000846.1_g000007 Rmu_sc0000851.1_g000002 Rmu_sc0000870.1_g000062 Rmu_sc0000982.1_g000022 Rmu_sc0000982.1_g000023 Rmu_sc0001035.1_g000073 Rmu_sc0001167.1_g000011 Rmu_sc0001167.1_g000012 Rmu_sc0001630.1_g000018 Rmu_sc0001970.1_g000016 Rmu_sc0001998.1_g000015 Rmu_sc0001998.1_g000016 Rmu_sc0002009.1_g000012 Rmu_sc0002129.1_g000044 Rmu_sc0002321.1_g000002 Rmu_sc0002344.1_g000012 Rmu_sc0002495.1_g000012 Rmu_sc0002498.1_g000013 Rmu_sc0002538.1_g000018 Rmu_sc0002538.1_g000019 Rmu_sc0002592.1_g000006 Rmu_sc0002648.1_g000001 Rmu_sc0002648.1_g000003 Rmu_sc0002691.1_g000041 Rmu_sc0002965.1_g000009 Rmu_sc0002965.1_g000010 Rmu_sc0002965.1_g000011 Rmu_sc0003070.1_g000014 Rmu_sc0003070.1_g000015 Rmu_sc0003131.1_g000017 Rmu_sc0003275.1_g000006 Rmu_sc0003275.1_g000074 Rmu_sc0003337.1_g000005 Rmu_sc0003368.1_g000056 Rmu_sc0003368.1_g000057 Rmu_sc0003402.1_g000019 Rmu_sc0003417.1_g000015 Rmu_sc0003499.1_g000010 Rmu_sc0004192.1_g000018 Rmu_sc0004277.1_g000054 Rmu_sc0004277.1_g000069 Rmu_sc0004277.1_g000070 Rmu_sc0004277.1_g000078 Rmu_sc0004277.1_g000079 Rmu_sc0004371.1_g000006 Rmu_sc0004371.1_g000007 Rmu_sc0004413.1_g000034 Rmu_sc0004542.1_g000014 Rmu_sc0004542.1_g000015 Rmu_sc0004657.1_g000010 Rmu_sc0004657.1_g000011 Rmu_sc0004657.1_g000012 Rmu_sc0004657.1_g000013 Rmu_sc0004663.1_g000004 Rmu_sc0004663.1_g000005 Rmu_sc0004929.1_g000003 Rmu_sc0005261.1_g000011 Rmu_sc0005261.1_g000012 Rmu_sc0005416.1_g000035 Rmu_sc0005416.1_g000036 Rmu_sc0005570.1_g000004 Rmu_sc0005704.1_g000003 Rmu_sc0005816.1_g000012 Rmu_sc0006076.1_g000003 Rmu_sc0006413.1_g000003 Rmu_sc0006720.1_g000003 Rmu_sc0006720.1_g000004 Rmu_sc0006841.1_g000003 Rmu_sc0006854.1_g000003 Rmu_sc0006854.1_g000011 Rmu_sc0006999.1_g000007 Rmu_sc0007089.1_g000001 Rmu_sc0007337.1_g000004 Rmu_sc0007415.1_g000032 Rmu_sc0007650.1_g000005 Rmu_sc0007754.1_g000002 Rmu_sc0007769.1_g000009 Rmu_sc0007927.1_g000001 Rmu_sc0008004.1_g000007 Rmu_sc0009016.1_g000001 Rmu_sc0009780.1_g000012 Rmu_sc0009780.1_g000013 Rmu_sc0009780.1_g000014 Rmu_sc0010190.1_g000001 Rmu_sc0010296.1_g000001 Rmu_sc0010546.1_g000006 Rmu_sc0010546.1_g000007 Rmu_sc0010647.1_g000001 Rmu_sc0010824.1_g000010 Rmu_sc0011876.1_g000001 Rmu_sc0012140.1_g000003 Rmu_sc0012140.1_g000005 Rmu_sc0012140.1_g000006 Rmu_sc0012262.1_g000001 Rmu_sc0013071.1_g000006 Rmu_sc0013071.1_g000007 Rmu_sc0013071.1_g000008 Rmu_sc0013354.1_g000002 Rmu_sc0013354.1_g000003 Rmu_sc0013389.1_g000002 Rmu_sc0014685.1_g000003 Rmu_sc0015011.1_g000003 Rmu_sc0015011.1_g000004 Rmu_sc0015307.1_g000001 Rmu_sc0015460.1_g000001 Rmu_sc0015460.1_g000002 Rmu_sc0017535.1_g000001 Rmu_sc0018333.1_g000004 Rmu_sc0018377.1_g000008 Rmu_sc0019962.1_g000002 Rmu_sc0025773.1_g000001 Rmu_sc0026446.1_g000004 Rmu_sc0026446.1_g000005 Rmu_sc0026770.1_g000001 Rmu_sc0029653.1_g000001 Rmu_sc0032235.1_g000001 Rmu_sc0035435.1_g000001 Rmu_sc0040849.1_g000001 Rmu_sc0041165.1_g000002 Rmu_ssc0000097.1_g000001 Rmu_ssc0000158.1_g000008
rosa_roxburghii Rroxscaffold_1G00003180 Rroxscaffold_1G00014990 Rroxscaffold_1G00031600 Rroxscaffold_1G00031960 Rroxscaffold_2G00120220 Rroxscaffold_2G00120230 Rroxscaffold_2G00123940 Rroxscaffold_2G00134410 Rroxscaffold_2G00134420 Rroxscaffold_3G00221900 Rroxscaffold_3G00239940 Rroxscaffold_3G00248690 Rroxscaffold_3G00259120 Rroxscaffold_5G00350510 Rroxscaffold_5G00363830 Rroxscaffold_5G00363840 Rroxscaffold_7G00171890 Rroxscaffold_7G00198160 Rroxscaffold_7G00201770
rosa_rugosa Rorug01G0087900 Rorug02G0158000 Rorug02G0158100 Rorug02G0248200 Rorug03G0171600 Rorug03G0202300 Rorug03G0339100 Rorug04G0085900 Rorug04G0086000.1 Rorug04G0086100 Rorug04G0343400 Rorug05G0027800 Rorug05G0251900 Rorug05G0253200 Rorug06G0297700 Rorug06G0480200 Rorug06G0480300 Rorug06G0501600
rosa_samantha Rh1AG154200 Rh1AG216100 Rh1CG145000 Rh1CG200400 Rh2BG220200 Rh2BG527400 Rh2BG527500 Rh2BG604600 Rh2DG075500 Rh2DG216000 Rh2DG536600 Rh2DG536700 Rh2DG586800 Rh3AG320200 Rh4AG012200 Rh4AG146000 Rh4AG233300 Rh4AG235900 Rh4AG346500 Rh4BG236200 Rh4CG152600 Rh4CG247900 Rh4DG232100 Rh5AG186900 Rh5AG187000 Rh5BG378900 Rh6AG073400 Rh6AG091000 Rh6AG091100 Rh6AG173800 Rh6AG404000 Rh6BG267600 Rh6BG282900
rosa_wichuraiana Rw1G011850 Rw4G020080 Rw5G049480 Rw6G014800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 350, 620
AatII GACGTC 1 cut(s) 996
Acc65I GGTACC 1 cut(s) 1925
AccB1I GGYRCC 1 cut(s) 1925
AccB7I CCANNNNNTGG 1 cut(s) 1702
AccBSI CCGCTC 1 cut(s) 2163
AccII CGCG 2 cut(s) 1333, 1665
AciI CCGC 6 cut(s) 387, 583, 1340, 1868, 2033, 2161
AclWI GGATC 6 cut(s) 114, 133, 317, 330, 2381, 2426
AcsI RAATTY 2 cut(s) 473, 1397
AcuI CTGAAG 6 cut(s) 1022, 1077, 1382, 1441, 1806, 1938
AcyI GRCGYC 2 cut(s) 993, 2030
AfaI GTAC 5 cut(s) 356, 1262, 1347, 1485, 1927
AfiI CCNNNNNNNGG 3 cut(s) 541, 1059, 1702
AflIII ACRYGT 1 cut(s) 1663
AhlI ACTAGT 1 cut(s) 844
AleI CACNNNNGTG 1 cut(s) 1340
Alw26I GTCTC 4 cut(s) 599, 984, 1306, 2321
AlwI GGATC 6 cut(s) 114, 133, 317, 330, 2381, 2426
AlwNI CAGNNNCTG 1 cut(s) 2294
AoxI GGCC 1 cut(s) 2198
ApeKI GCWGC 6 cut(s) 745, 748, 787, 1328, 1870, 2398
ApoI RAATTY 2 cut(s) 473, 1397
AseI ATTAAT 1 cut(s) 1437
Asp700I GAANNNNTTC 2 cut(s) 882, 1367
Asp718I GGTACC 1 cut(s) 1925
AspLEI GCGC 3 cut(s) 1333, 1335, 2390
AspS9I GGNCC 4 cut(s) 701, 1449, 1705, 1816
AsuHPI GGTGA 4 cut(s) 1541, 1648, 2017, 2052
AvaII GGWCC 4 cut(s) 701, 1449, 1705, 1816
BaeGI GKGCMC 1 cut(s) 1018
BaeI ACNNNNGTAYC 2 cut(s) 404, 437
BamHI GGATCC 1 cut(s) 322
BanI GGYRCC 1 cut(s) 1925
BbsI GAAGAC 3 cut(s) 432, 673, 915
BbvI GCAGC 6 cut(s) 757, 760, 774, 1340, 1882, 2410
BccI CCATC 7 cut(s) 618, 703, 1118, 1175, 1460, 1800, 2362
BceAI ACGGC 1 cut(s) 1353
BclI TGATCA 2 cut(s) 217, 964
BcoDI GTCTC 4 cut(s) 599, 984, 1306, 2321
BcuI ACTAGT 1 cut(s) 844
BfmI CTRYAG 1 cut(s) 2109
BfoI RGCGCY 1 cut(s) 2391
BglII AGATCT 1 cut(s) 2042
BisI GCNGC 7 cut(s) 746, 749, 788, 1329, 1871, 2033, 2399
BlsI GCNGC 7 cut(s) 747, 750, 789, 1330, 1872, 2034, 2400
Bme18I GGWCC 4 cut(s) 701, 1449, 1705, 1816
BmgT120I GGNCC 4 cut(s) 701, 1449, 1705, 1816
BmiI GGNNCC 5 cut(s) 324, 392, 513, 557, 1927
BmsI GCATC 5 cut(s) 30, 521, 1529, 1800, 2089
BoxI GACNNNNGTC 1 cut(s) 932
BpiI GAAGAC 3 cut(s) 432, 673, 915
BplI GAGNNNNNCTC 2 cut(s) 2301, 2333
BpmI CTGGAG 1 cut(s) 1398
Bpu10I CCTNAGC 1 cut(s) 2195
BpuEI CTTGAG 3 cut(s) 401, 581, 1730
BsaAI YACGTR 1 cut(s) 502
BsaHI GRCGYC 2 cut(s) 993, 2030
BsaI GGTCTC 1 cut(s) 1306
BsaJI CCNNGG 9 cut(s) 326, 484, 704, 770, 1512, 1571, 1696, 1747, 2380
BsaWI WCCGGW 1 cut(s) 1480
Bsc4I CCNNNNNNNGG 3 cut(s) 541, 1059, 1702
Bse1I ACTGG 4 cut(s) 458, 557, 881, 979
Bse3DI GCAATG 3 cut(s) 742, 1275, 1623
BseDI CCNNGG 9 cut(s) 326, 484, 704, 770, 1512, 1571, 1696, 1747, 2380
BseGI GGATG 7 cut(s) 21, 259, 536, 714, 718, 1168, 1815
BseLI CCNNNNNNNGG 3 cut(s) 541, 1059, 1702
BseMI GCAATG 3 cut(s) 742, 1275, 1623
BseMII CTCAG 2 cut(s) 1705, 2080
BseNI ACTGG 4 cut(s) 458, 557, 881, 979
BsePI GCGCGC 1 cut(s) 1331
BseRI GAGGAG 3 cut(s) 116, 731, 1395
BseSI GKGCMC 1 cut(s) 1018
BseXI GCAGC 6 cut(s) 757, 760, 774, 1340, 1882, 2410
BsgI GTGCAG 1 cut(s) 2417
Bsh1236I CGCG 2 cut(s) 1333, 1665
Bsh1285I CGRYCG 1 cut(s) 1308
BshFI GGCC 1 cut(s) 2200
BshNI GGYRCC 1 cut(s) 1925
BsiEI CGRYCG 1 cut(s) 1308
BsiSI CCGG 2 cut(s) 732, 1481
BslI CCNNNNNNNGG 3 cut(s) 541, 1059, 1702
BsmAI GTCTC 4 cut(s) 599, 984, 1306, 2321
BsmBI CGTCTC 1 cut(s) 984
BsmI GAATGC 3 cut(s) 80, 1618, 2346
BsnI GGCC 1 cut(s) 2200
Bso31I GGTCTC 1 cut(s) 1306
Bsp1286I GDGCHC 1 cut(s) 1018
Bsp19I CCATGG 1 cut(s) 704
BspACI CCGC 6 cut(s) 387, 583, 1340, 1868, 2033, 2161
BspANI GGCC 1 cut(s) 2200
BspCNI CTCAG 2 cut(s) 1704, 2079
BspFNI CGCG 2 cut(s) 1333, 1665
BspLI GGNNCC 5 cut(s) 324, 392, 513, 557, 1927
BspPI GGATC 6 cut(s) 114, 133, 317, 330, 2381, 2426
BspT107I GGYRCC 1 cut(s) 1925
BspTNI GGTCTC 1 cut(s) 1306
BsrBI CCGCTC 1 cut(s) 2163
BsrDI GCAATG 3 cut(s) 742, 1275, 1623
BsrI ACTGG 4 cut(s) 458, 557, 881, 979
BssECI CCNNGG 9 cut(s) 326, 484, 704, 770, 1512, 1571, 1696, 1747, 2380
BssHII GCGCGC 1 cut(s) 1331
BssNI GRCGYC 2 cut(s) 993, 2030
BssT1I CCWWGG 9 cut(s) 326, 484, 704, 770, 1512, 1571, 1696, 1747, 2380
Bst4CI ACNGT 4 cut(s) 161, 1766, 2207, 2222
Bst6I CTCTTC 2 cut(s) 1208, 1782
BstACI GRCGYC 2 cut(s) 993, 2030
BstBAI YACGTR 1 cut(s) 502
BstC8I GCNNGC 4 cut(s) 1333, 1868, 1950, 2104
BstDEI CTNAG 4 cut(s) 1691, 2066, 2195, 2337
BstDSI CCRYGG 1 cut(s) 704
BstF5I GGATG 7 cut(s) 21, 259, 536, 714, 718, 1168, 1815
BstFNI CGCG 2 cut(s) 1333, 1665
BstH2I RGCGCY 1 cut(s) 2391
BstHHI GCGC 3 cut(s) 1333, 1335, 2390
BstMAI GTCTC 4 cut(s) 599, 984, 1306, 2321
BstMCI CGRYCG 1 cut(s) 1308
BstMWI GCNNNNNNNGC 1 cut(s) 1337
BstPAI GACNNNNGTC 1 cut(s) 932
BstSFI CTRYAG 1 cut(s) 2109
BstSLI GKGCMC 1 cut(s) 1018
BstUI CGCG 2 cut(s) 1333, 1665
BstV1I GCAGC 6 cut(s) 757, 760, 774, 1340, 1882, 2410
BstV2I GAAGAC 3 cut(s) 432, 673, 915
BstX2I RGATCY 4 cut(s) 138, 322, 2042, 2373
BstYI RGATCY 4 cut(s) 138, 322, 2042, 2373
BsuRI GGCC 1 cut(s) 2200
BtgI CCRYGG 1 cut(s) 704
BtsCI GGATG 7 cut(s) 21, 259, 536, 714, 718, 1168, 1815
BtsI GCAGTG 2 cut(s) 1629, 2292
BtsIMutI CAGTG 6 cut(s) 166, 858, 1140, 1629, 2074, 2292
Cac8I GCNNGC 4 cut(s) 1333, 1868, 1950, 2104
CaiI CAGNNNCTG 1 cut(s) 2294
CfoI GCGC 3 cut(s) 1333, 1335, 2390
Cfr13I GGNCC 4 cut(s) 701, 1449, 1705, 1816
CseI GACGC 1 cut(s) 2038
Csp6I GTAC 5 cut(s) 355, 1261, 1346, 1484, 1926
CspCI CAANNNNNGTGG 2 cut(s) 1071, 1106
CviAII CATG 7 cut(s) 36, 212, 705, 1149, 1349, 2299, 2320
CviQI GTAC 5 cut(s) 355, 1261, 1346, 1484, 1926
DdeI CTNAG 4 cut(s) 1691, 2066, 2195, 2337
Eam1104I CTCTTC 2 cut(s) 1208, 1782
EarI CTCTTC 2 cut(s) 1208, 1782
Eco130I CCWWGG 9 cut(s) 326, 484, 704, 770, 1512, 1571, 1696, 1747, 2380
Eco31I GGTCTC 1 cut(s) 1306
Eco32I GATATC 2 cut(s) 262, 1855
Eco47I GGWCC 4 cut(s) 701, 1449, 1705, 1816
Eco57I CTGAAG 6 cut(s) 1022, 1077, 1382, 1441, 1806, 1938
EcoRI GAATTC 2 cut(s) 473, 1397
EcoRV GATATC 2 cut(s) 262, 1855
EcoT14I CCWWGG 9 cut(s) 326, 484, 704, 770, 1512, 1571, 1696, 1747, 2380
ErhI CCWWGG 9 cut(s) 326, 484, 704, 770, 1512, 1571, 1696, 1747, 2380
Esp3I CGTCTC 1 cut(s) 984
FaeI CATG 7 cut(s) 39, 215, 708, 1152, 1352, 2302, 2323
FatI CATG 7 cut(s) 35, 211, 704, 1148, 1348, 2298, 2319
FauI CCCGC 2 cut(s) 380, 1875
FbaI TGATCA 2 cut(s) 217, 964
Fnu4HI GCNGC 7 cut(s) 746, 749, 788, 1329, 1871, 2033, 2399
FokI GGATG 7 cut(s) 8, 266, 543, 721, 725, 1175, 1822
Fsp4HI GCNGC 7 cut(s) 746, 749, 788, 1329, 1871, 2033, 2399
GlaI GCGC 3 cut(s) 1332, 1334, 2389
GluI GCNGC 7 cut(s) 746, 749, 788, 1329, 1871, 2033, 2399
GsuI CTGGAG 1 cut(s) 1398
HaeII RGCGCY 1 cut(s) 2391
HaeIII GGCC 1 cut(s) 2200
HapII CCGG 2 cut(s) 732, 1481
HgaI GACGC 1 cut(s) 2038
HhaI GCGC 3 cut(s) 1333, 1335, 2390
Hin1I GRCGYC 2 cut(s) 993, 2030
Hin1II CATG 7 cut(s) 39, 215, 708, 1152, 1352, 2302, 2323
Hin6I GCGC 3 cut(s) 1331, 1333, 2388
HinP1I GCGC 3 cut(s) 1331, 1333, 2388
HincII GTYRAC 3 cut(s) 937, 997, 1762
HindII GTYRAC 3 cut(s) 937, 997, 1762
HindIII AAGCTT 1 cut(s) 119
HinfI GANTC 7 cut(s) 32, 125, 304, 607, 1311, 1673, 2023
HpaII CCGG 2 cut(s) 732, 1481
HphI GGTGA 4 cut(s) 1541, 1648, 2017, 2052
Hpy166II GTNNAC 7 cut(s) 850, 937, 997, 1132, 1261, 1627, 1762
Hpy188III TCNNGA 5 cut(s) 592, 905, 1226, 1519, 2416
Hpy8I GTNNAC 7 cut(s) 850, 937, 997, 1132, 1261, 1627, 1762
Hpy99I CGWCG 1 cut(s) 2032
HpyCH4III ACNGT 4 cut(s) 161, 1766, 2207, 2222
HpyCH4IV ACGT 2 cut(s) 501, 993
HpyCH4V TGCA 6 cut(s) 285, 481, 1137, 1616, 1913, 2398
HpyF10VI GCNNNNNNNGC 1 cut(s) 1337
HpyF3I CTNAG 4 cut(s) 1691, 2066, 2195, 2337
HpySE526I ACGT 2 cut(s) 501, 993
Hsp92I GRCGYC 2 cut(s) 993, 2030
Hsp92II CATG 7 cut(s) 39, 215, 708, 1152, 1352, 2302, 2323
HspAI GCGC 3 cut(s) 1331, 1333, 2388
KpnI GGTACC 1 cut(s) 1929
Ksp22I TGATCA 2 cut(s) 217, 964
LmnI GCTCC 6 cut(s) 208, 511, 1093, 1423, 2168, 2365
Lsp1109I GCAGC 6 cut(s) 757, 760, 774, 1340, 1882, 2410
LweI GCATC 5 cut(s) 30, 521, 1529, 1800, 2089
MaeII ACGT 2 cut(s) 501, 993
MaeIII GTNAC 4 cut(s) 161, 456, 922, 1766
MbiI CCGCTC 1 cut(s) 2163
MfeI CAATTG 1 cut(s) 777
MflI RGATCY 4 cut(s) 138, 322, 2042, 2373
MhlI GDGCHC 1 cut(s) 1018
MluI ACGCGT 1 cut(s) 1663
MlyI GAGTC 2 cut(s) 601, 2017
MmeI TCCRAC 3 cut(s) 1288, 2051, 2304
MroXI GAANNNNTTC 2 cut(s) 882, 1367
MseI TTAA 2 cut(s) 198, 1437
MslI CAYNNNNRTG 4 cut(s) 1256, 1340, 1649, 2297
MspI CCGG 2 cut(s) 732, 1481
MunI CAATTG 1 cut(s) 777
Mva1269I GAATGC 3 cut(s) 80, 1618, 2346
MvnI CGCG 2 cut(s) 1333, 1665
MwoI GCNNNNNNNGC 1 cut(s) 1337
NcoI CCATGG 1 cut(s) 704
NlaIII CATG 7 cut(s) 39, 215, 708, 1152, 1352, 2302, 2323
NlaIV GGNNCC 5 cut(s) 324, 392, 513, 557, 1927
NmeAIII GCCGAG 1 cut(s) 2286
NmuCI GTSAC 3 cut(s) 161, 456, 922
OliI CACNNNNGTG 1 cut(s) 1340
PauI GCGCGC 1 cut(s) 1331
PctI GAATGC 3 cut(s) 80, 1618, 2346
PdmI GAANNNNTTC 2 cut(s) 882, 1367
PfeI GAWTC 5 cut(s) 32, 125, 304, 1311, 1673
PflMI CCANNNNNTGG 1 cut(s) 1702
PkrI GCNGC 7 cut(s) 747, 750, 789, 1330, 1872, 2034, 2400
PleI GAGTC 2 cut(s) 601, 2017
PpsI GAGTC 2 cut(s) 601, 2017
Ppu21I YACGTR 1 cut(s) 502
PshAI GACNNNNGTC 1 cut(s) 932
PshBI ATTAAT 1 cut(s) 1437
PsiI TTATAA 2 cut(s) 350, 620
PspN4I GGNNCC 5 cut(s) 324, 392, 513, 557, 1927
PspPI GGNCC 4 cut(s) 701, 1449, 1705, 1816
PstNI CAGNNNCTG 1 cut(s) 2294
PsuI RGATCY 4 cut(s) 138, 322, 2042, 2373
PteI GCGCGC 1 cut(s) 1331
RsaI GTAC 5 cut(s) 356, 1262, 1347, 1485, 1927
RsaNI GTAC 5 cut(s) 355, 1261, 1346, 1484, 1926
RseI CAYNNNNRTG 4 cut(s) 1256, 1340, 1649, 2297
SaqAI TTAA 2 cut(s) 198, 1437
SatI GCNGC 7 cut(s) 746, 749, 788, 1329, 1871, 2033, 2399
Sau96I GGNCC 4 cut(s) 701, 1449, 1705, 1816
SchI GAGTC 2 cut(s) 601, 2017
SduI GDGCHC 1 cut(s) 1018
SfaNI GCATC 5 cut(s) 30, 521, 1529, 1800, 2089
SfcI CTRYAG 1 cut(s) 2109
SinI GGWCC 4 cut(s) 701, 1449, 1705, 1816
SmiMI CAYNNNNRTG 4 cut(s) 1256, 1340, 1649, 2297
SmlI CTYRAG 3 cut(s) 416, 560, 1709
SmoI CTYRAG 3 cut(s) 416, 560, 1709
SpeI ACTAGT 1 cut(s) 844
SsiI CCGC 6 cut(s) 387, 583, 1340, 1868, 2033, 2161
StyI CCWWGG 9 cut(s) 326, 484, 704, 770, 1512, 1571, 1696, 1747, 2380
TaaI ACNGT 4 cut(s) 161, 1766, 2207, 2222
TaiI ACGT 2 cut(s) 504, 996
TaqI TCGA 4 cut(s) 980, 1537, 1772, 2079
TaqII GACCGA 1 cut(s) 1294
TauI GCSGC 1 cut(s) 2035
TfiI GAWTC 5 cut(s) 32, 125, 304, 1311, 1673
Tru1I TTAA 2 cut(s) 198, 1437
Tru9I TTAA 2 cut(s) 198, 1437
TscAI CASTG 6 cut(s) 166, 865, 1147, 1629, 2074, 2299
TseFI GTSAC 3 cut(s) 161, 456, 922
TseI GCWGC 6 cut(s) 745, 748, 787, 1328, 1870, 2398
Tsp45I GTSAC 3 cut(s) 161, 456, 922
TspGWI ACGGA 3 cut(s) 221, 543, 876
TspRI CASTG 6 cut(s) 166, 865, 1147, 1629, 2074, 2299
Van91I CCANNNNNTGG 1 cut(s) 1702
VpaK11BI GGWCC 4 cut(s) 701, 1449, 1705, 1816
VspI ATTAAT 1 cut(s) 1437
XapI RAATTY 2 cut(s) 473, 1397
XbaI TCTAGA 1 cut(s) 904
XmnI GAANNNNTTC 2 cut(s) 882, 1367
ZraI GACGTC 1 cut(s) 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.